BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20260.1
Length=2202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479545 jgi|Araly1|479545|fgenesh2_kg.3__2246__AT3G20260.1 2678 0.0
> Ahg479545 jgi|Araly1|479545|fgenesh2_kg.3__2246__AT3G20260.1
Length=2074
Score = 2678 bits (1450), Expect = 0.0
Identities = 1934/2144 (90%), Gaps = 127/2144 (6%)
Strand=Plus/Plus
Query 68 tttttttttGGAATTTGAAATCACAAAGTTTAATTATTGAATTTAATGACATCTGTTTAA 127
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 41 TTTTTTTTTGGAATTTGAAATCACAAAGTTTAATTACTGAATTTAATGACATCTGTTT-A 99
Query 128 GA-ATCAATAATACTTGCTCTCCTTTCCTCTCTCACATTTATATTGTGCTCTCTCTGTCC 186
|| |||||||||| |||||||||||||||||||||||||||||
Sbjct 100 GATATCAATAATA------------------CTCACATTTATATTGTGCTCTCTCTGTCC 141
Query 187 ATTTACTGAAAAAACTTGAATTGAGACATTATTATACTTTGCTTtctctctctctctctT 246
|| ||||| ||||||||||| | ||| | || | || || || ||||||||||||||
Sbjct 142 ATATACTG-AAAAACTTGAA-T-AGAGAGTA-AAGACATT--ATTATCTCTCTCTCTCTT 195
Query 247 GCAAGTGGTTAGAAACATTTCTCCTTCTTTAATCTCCTCCTCCTCCTGtctttgtctttc 306
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GCAAGTTGTTAGAAACATTTCTCCTTCTTTAATCTCCTCCTCCTCCTGTCTTTGTCTTTC 255
Query 307 gattttgttttgctttta-tt-tgggtttctctttctttcttaaattttgaatctttttc 364
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 256 GATTTTGTTTTGCTTTTATTTATGGGTTTGTCTTTCTTTCTTAAATTTTGAATCTTTTTC 315
Query 365 tttctttttgttttttttctCACACTCTTTGCTCAGTGTAGTAGTAGTTTCAGTGGAGTG 424
|||||||||| | ||| | | | ||| ||||||||||||||||
Sbjct 316 TTTCTTTTTG---------------T-TTT--T---T-T-GTACTAGTTTCAGTGGAGTG 352
Query 425 TTGATTTATCAGGGAATGCTAGTGTTCTTATCAGCTAGAGATTAGTGAATCGAATCTAAA 484
|||||||| |||| |||||||||| | | ||| ||||||| |||| ||
Sbjct 353 TTGATTTACCAGGTAATGCTAGTG--------A--T-----TTA-TGAATCGTATCTGAA 396
Query 485 GTTTCAGACAAATGCTGTTGTTGCTACTGATC---T-ACTTATGCATTCTT-AATCTTCT 539
||||| ||||||||| ||||| ||||||||| | | ||||||||| || |||||||
Sbjct 397 CTTTCACACAAATGCTCTTGTTCCTACTGATCTTGTGATTTATGCATT-TTCCATCTTCT 455
Query 540 GTCGG-TGTTCCTAATTCTCTAGGGTTTGCTCATGATTCTCTGAGATCTTACTAGATTCA 598
||||| || | || ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 456 GTCGGTTGCT-CTGATTCTCTAGGGTTTGGTCATGATTCTCTGAGATCCTACTAGATTCA 514
Query 599 TGCATTTTCCTCATTCTCTGGTTTGGTTGATTCTTTGATTAAGTTCGTTGTGGCAGAAGA 658
|||||||| | |||||| |||||| |||| | |||||||||||| || | | | |
Sbjct 515 TGCATTTTACACATTCTGTGGTTTAGTTGCTACTTTGATTAAGTCCG-T-T----G--G- 565
Query 659 GAAACGCTTTTACTCATGCAAAGAGACTAGTCTCAGTTTAGATCTTATGATTTAACAAAA 718
| | || | |||||| ||||||| ||||||||||| ||||||||||||
Sbjct 566 G----G--------CA-G--AAGAGA-AAGTCTCAATTTAGATCTTAAGATTTAACAAAA 609
Query 719 -A-ACACTCACTC-TCCTAAGTGTGTTTGAGGAGGCAATGGATTTCTTGAAAGTTAGAAA 775
| ||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 610 GAGACACT-ACTCTTCC-AAGTGTGTTTGAGGAGGCAATGGATTTCTTGAGAGTTAGAAA 667
Query 776 ATTTCGAAAGTCTCGGAAGCCAAACCTTGAAAAGGAGAAAGAAGACAAGATATTGGCTCA 835
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 ATTTCGCAAGTCACGGAAGCCAAACCTTGAAAAGGAGAAAGAAGACAAGATTTTGGCTCA 727
Query 836 GCAAGAACAGGCAAGGAGTGAGAACACTGAAGCTGGTGTGATAGATTCGGGGAAAGGAGA 895
|||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 728 GCAAGAGCAGGCAAGGAGTGATAACACTGAAGCTGGTGTGATAGATTCGGCTAAAACAGA 787
Query 896 TGAGATCGAAGATGACGATGATGATTTCATTACCAATGAGGTTAAGAGAAGGCTCAAGGA 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CGAGATCGAAGATGACGATGATGATTTCATTACCAATGAGGTTAAGAGAAGGCTCAAGGA 847
Query 956 GTTGAGGAGAAACAGTTTCATGGTGTTGATACCTGA-G--gaagaagaagaagaagaaga 1012
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 848 GTTGAGGAGAAACAGTTTCATGGTGTTGATACCTGAGGAAGAAGAAGAAGAAGAAGAAGA 907
Query 1013 GGAATCGTATCTAGATGAAGATGATGATGACGGAGAAGACAAGTGTTCAAGTGAGTGGAG 1072
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GGAATCTTATCTAGACGAAGATGATGATGACGGAGAAGACAAGTGTTCAAGTGAGTGGAG 967
Query 1073 AGATGTGGTTGCTGAAGGACTTCAATGGTGGGGAGGTTTTGATGCTGTCTATGAAAAGTA 1132
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AGATGTGGTCGCTGAAGGACTTCAATGGTGGGGAGGTTTTGATGCTGTCTATGAAAAGTA 1027
Query 1133 TTGCGAGCGTATGCTCTTCTTTGATCGTTTAAGCTCTCAGCAGCTCAAGGAAACTGGCAT 1192
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1028 TTGTGAGCGTATGCTCTTCTTTGATCGTTTAAGCTCTCAGCAACTCAAGGAAACTGGCAT 1087
Query 1193 TGGAATTGCTCCAAGTCCTTCAACTCCATCGCCAAGATCTGCATCTAAGAAGCTGTCATC 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TGGAATTGCTCCAAGTCCTTCAACTCCATCGCCAAGATCTGCATCTAAGAAGCTGTCATC 1147
Query 1253 GCCTTTCCGATGTCTTTCTCTCAAAAAGTTTGATGTTCCGGAGGAAGATATCGAGCATTT 1312
|||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1148 GCCTTTTCGATGTCTTTCTCTCAAGAAGTTGGATGTTCCCGAGGAAGATATCGAGCATTT 1207
Query 1313 GCAGCCGACAGAAGTTGACGACCCTTATCAAGATCTAGAGACGGCCTATGTTGCTCAACT 1372
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1208 GCAGCCGACAGAAATT---GACCCTTACCAAGATCTAGAGACGGCTTATGTTGCTCAACT 1264
Query 1373 CTGCCTCACTTGGGAGGCACTTCACTGTCAATACACGCAGCTGAGCCACTTAATCTCATG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 CTGCCTCACTTGGGAGGCACTTCACTGTCAATACACGCAGCTGAGCCACTTAATCTCATG 1324
Query 1433 CCAACCCGAAACCCCGACTTGCTACAACCATACTGCCCAACTGTTTCAGCAATTCCTAGT 1492
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1325 CCAACCCGAAACTCCGACTTGCTACAACCATACTGCCCAACTGTTTCAGCAATTCTTAGT 1384
Query 1493 CTTGTTGCAGAGGTATATAGAGAATGAACCGTTTGAGCAAGGCTCAAGATCGGAACTTTA 1552
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1385 CTTGTTGCAGAGGTATATAGAGAATGAACCATTTGAGCAGGGCTCAAGATCTGAACTTTA 1444
Query 1553 TGCTCGTGCTAGAAATGCAATGCCTAAGCTACTTCAAGCTCCTAAGATTCAAGGGTCAGA 1612
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TGCACGTGCTAGAAATGCAATGCCTAAGCTACTTCAAGCTCCTAAGATTCAAGGGTCAGA 1504
Query 1613 TAAAAAGGAGATGGAGAAAGATACAGGCTTCATGGTCCTCGCTGATGATCTCATC-AAAG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1505 TAAAAAGGAGATGGAGAAAGATACAGGCTTCATGGTCCTCGCTGATGATCTCATCCAAA- 1563
Query 1672 TCATAGAGAGCTCGATCCTTACTTTCAACGTCTTCTTGAAAATGGATAAGAAGAAACCAA 1731
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1564 TCATCGAGAGCTCGATCCTTACTTTCAACGTTTTCTTGAAAATGGATAAGAAGAAACCAA 1623
Query 1732 ATGGGGGTATTCACTTGTTTGGGAACCACAACAACAACCATGTGAATTCTACAACTCCTT 1791
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1624 ATGGGGGTATTCACTTGTTTGGGAACCACAACAACAACCATTTAAATTCTATAACTCCTT 1683
Query 1792 TACTACTGGTTCAGTCATCCATTGATAAGAAAAGGGTGAAAGCAAAGGAGCTTTCAAAGA 1851
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1684 TACTACTGGTTCAGTCATCCATTGATAAGAAGAGAGTGAAAGCGAAGGAGCTTTCAAAGA 1743
Query 1852 AGACAAAAGGGCTGAGAAAGAAATCATGGCCTCAAACATGGGAAGGTGTTCAACTCTTGT 1911
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 AGACAAAAGGATTGAGAAAGAAATCATGGCCTCAAACATGGGAAGGTGTTCAACTCTTGT 1803
Query 1912 TTGCAGCCATTGACATCAAACTCGCAACACGGGTTTTGAGGATGTCGAAAATCAGTAAAG 1971
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1804 TTGCAGCCATTGACATCAAACTCGCAACACGGGTATTGAGGATGGCGAAAATCAGTAAAG 1863
Query 1972 AGCAACTTCTATGGTGTGAAGAAAAGATGAAAAAGCTCAACTTTTCAGCTGGGAAGCTTC 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 AGCAACTTCTATGGTGTGAAGAAAAGATGAAAAAGCTCAACTTTTCAGCTGGGAAGCTTC 1923
Query 2032 AAAGACACCCATCTCCAATTCTTTTCCCTTGTTGATATAATAAAGTGATGAACACACAAT 2091
|||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1924 AAAGACACCCATCTCCAATTCTTTTCCCATGTTGATA-AA------------CACACAAT 1970
Query 2092 GATTTCAAATACTGTAGCATCAACTGTTCCCTTTTTATACGATCTTTAAGAT-CCGGTTT 2150
|||||||||| | || |||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1971 GATTTCAAATTCAGTCGCATCAACTGTTCCCTTTTTATCCGATCATTAAGATTCCGGTTT 2030
Query 2151 GGGGATTTTTCTTTTGCAGACAAATCAAAGAAGAAATTGTGTGT 2194
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 GGGGATTTTTCTTTTGCAGACAAATCAAAGAAGAAATTGTGTGT 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82884373120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5