BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20300.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479553 jgi|Araly1|479553|fgenesh2_kg.3__2254__AT3G20300.1 2505 0.0
Ahg914174 jgi|Araly1|914174|Al_scaffold_0001_4428 920 0.0
> Ahg479553 jgi|Araly1|479553|fgenesh2_kg.3__2254__AT3G20300.1
Length=1637
Score = 2505 bits (1356), Expect = 0.0
Identities = 1564/1661 (94%), Gaps = 28/1661 (2%)
Strand=Plus/Plus
Query 22 TCCAACCGCGTCATCAATTTATATTTAGACAACaaaaaaaaaaaaaGCCAGAGCCTCTCC 81
|||||||||||||||||||||||||| | | |||||||||| ||||||||||||
Sbjct 1 TCCAACCGCGTCATCAATTTATATTT-G---GC---AAAAAAAAAA--CAGAGCCTCTCC 51
Query 82 GGTAATTTCTCATTTTCCCGAGCGATCGTCCATGGCGGACATCGACATCGGAACCGCAGC 141
||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 52 TCAAATTTCTCACTTT-CCGAGCGATCGTCCATGGCGGACATCGACATCGGGACCGCAGC 110
Query 142 AACAACAGGAGGAAACGAAGGAAGAGGAGGCACACGAGAACGTCTAATAAACCGAGAAAA 201
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 111 AACAACAGGAGGAAACGACGGAAGAGGA---ACACGAGAACGTCTAATAAACCGAGAAAC 167
Query 202 CAAGTTCACACGTAGCGTATCTCACGCACAAGACGAGCTCCACAGTTTCCGGAAATATCT 261
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 168 CAAGTTCACACGTAGCGTATCTCACGCACAAGACGAGCTCCAGAGTTTCCGGAAATATCT 227
Query 262 CCGATGGATGTGCGTAGATCAGTCGAGTCCTTGGACGGCGGTTCTATCATGGTCTATGTT 321
|||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 228 GCGATGGATGTGCGTGGATCAGTCGAGTCCTTGGACCGCGGTTCTCTCTTGGTCTATGTT 287
Query 322 CGTTGTTTTCACGCTCGTTGTTCCTGCCACGTCTCACTTCATGCTCGCTTGCT-CTGACT 380
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 288 TGTTGTTTTCACGCTCGTTGTTCCTGCCACGTCTCACTTCATGCTCGCTTG-TGCTGACT 346
Query 381 GCGATAGCCATCACTCTAGGCCGTACGATTCCGTTGTTCAGCTTTCTCTTAGCAGTTTCG 440
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 347 GCGATAGCCATCACTCGAGGCCGTACGATTCCGTTGTCCAGCTTTCTCTTAGCAGTTTCG 406
Query 441 CTGCTCTTTCGTTTCTT-TGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTC 499
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTGCTCTTTCGTTT-TTATGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTT 465
Query 500 CTATTCTTTGATAAGCTTTGGGATGAGAGCGAGACCGTTCGTCTAGGCTACACCAATCAG 559
|| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 466 CTGTTCTTTGATAAGCTTTGGGATGAGAGCGAGACGGTTCGTCGAGGCTACACCAATCAG 525
Query 560 CTCAATAGATCGCTTAAGATTCTCTCCTACTTCGTGTCTCCTTGTTTCTTAGCGATGAGC 619
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 526 CTCAATAGGTCGCTCAAGATTCTCTCCTACTTCGTCACTCCTTGTTTCTTAGCGATGAGC 585
Query 620 TCTTATAAGATATGGTGGTATGCTTCAGGAGCTTCTCAGATTCCTTTCCTTGGTAATGTT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TCTTATAAGATATGGTGGTATGCTTCAGGAGCTTCTCAGATTCCTTTCCTTGGTAATGTT 645
Query 680 ATCTTGAGTGATACAGTTGCTTGTTTGATGGAGCTCTGCTCGTGGTTGTACCGTACTACC 739
||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 646 ATCTTGAGTGATACAGTCGCTTGTCTGATGGAACTCTGCTCGTGGCTGTACCGTACTACC 705
Query 740 GTGATCTTTCTGGTTTGTGTCCTCTTCCGTCTCATCTGCCATCTCCAGATTCTTAGGCTG 799
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 706 GTGATCTTTCTGGTTTGCGTCCTCTTTCGTCTCATCTGTCATCTCCAGATTCTTAGGCTG 765
Query 800 CAAGACTTTGCCCAGGTTTTCCAGATGGATTCAGATGTTGGTTCTATCTTGTCTGAACAT 859
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 766 CAAGACTTTGCTCAGGTTTTCCAGATGGATTCTGATGTTGGTTCTATCTTGTCTGAACAT 825
Query 860 CTCCGTATCAGACGTCATCTGAGAATCATCAGCCACCGATACCGAACCTTTATATTGTTG 919
||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 826 CTCCGCATCAGACGTCACCTGAGAATCATCAGCCACAGATACCGAACCTTTATATTGTTG 885
Query 920 TCCTTGATA-TTAGTCACTGGAAGTCAGTTTTACTCTCTGCTTATTACCACTAAGGCCTA 978
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TCCTTGATTCTT-GTCACTGGAAGTCAGTTTTACTCTCTGCTTATTACCACTAAGGCCTA 944
Query 979 CGCTGAATTGAATATCTACAGAGCTGGAGAACTAGCACTATGTTCAATGACGCTGGTCAC 1038
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 945 CGCTGAATTGAATATCTACAGAGCAGGAGAACTAGCACTATGTTCAATGACGCTGGTCAC 1004
Query 1039 TGCACTGCTCATTTTACTACGAAGTGCATCAAAGATCACACACAAGGCTCAGGCGGTGAC 1098
|||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1005 CGCACTGCTCATTCTACTACGAAGTGCCTCAAAGATCACACACAAGGCTCAGGCAGTGAC 1064
Query 1099 TTGTCTTGCAGCCAAGTGGCATGTATGTGCGACGATAGAATCCTTTGAGACTGTGGATGG 1158
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1065 TTGTCTTGCAGCCAAGTGGCATGTCTGTGCGACAATAGAATCCTTTGAGACAGTGGATGG 1124
Query 1159 AGAGACTCCAAGGTTAGTTGATAGAGCAAGCGGACACGGATACTATCCAACAGATGATGA 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGAGACTCCAAGGTTAGTTGATAGAGCAAGCGGACACGGATACTATCCAACAGATGATGA 1184
Query 1219 TAATGGAGAATCAGATAGTGAAGATTATGGAGACGAAGAAGATGATTTCGATAACAACAA 1278
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TAATGGAGAATCAGACAGTGAAGATTATGGAGACGAAGAAGATGATTTCGATAACAACAA 1244
Query 1279 TCTCATTCCTGCTTATGCTTATAGCACCATATCATTCCAAAAACGGCAAGCTCTAGTGAA 1338
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 1245 TCTCATTCCTGCTTATGCTTACAGCACCATATCATTCCAAAAAAGGCAAGCTCTAGTTAA 1304
Query 1339 TTACTTTGAGAACAATAGATCAGGAATCACGGTGTTTGGGTTTACACTTGATAGAAGCAC 1398
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1305 TTACTTTGAGAACAATAGAGCAGGAATCACGGTGTTTGGGTTTACACTTGATAGAAGTAC 1364
Query 1399 TCTCCATACAATCTTCGGTATCGAAATGTCGCTTGTTCTCTGGTTACTTGGTAAGACCAT 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TCTCCATACAATCTTCGGTATCGAAATGTCGCTTGTTCTCTGGTTACTTGGTAAGACCAT 1424
Query 1459 TGGAATTTCTTGAATCATTCTTTGGATCATTAAAGTTCTCAAAGTTTTGGCTCCCTTGTT 1518
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1425 TGGAATTTCTTGAAGCATTCTTTGGATCATTAAAGCTCTCAAAGTTTTGGCTCCCTTGTT 1484
Query 1519 GGATGATGTTGGTATATGCATGTATGTATACACAGAGGCTCTATGTAAAATAACGTTTTC 1578
|||||||||| |||||| | | | ||| | | ||||||||||||| |||||| ||||
Sbjct 1485 GGATGATGTTAGTATATT--T-T-T-TATGC-C-GAGGCTCTATGTATAATAACAATTTC 1537
Query 1579 TCGtttttttATCACTGTAAATCATCTTATTTTTTCTTTAACATGTCGATTT-GTAATAG 1637
|| |||| | ||||||||||||| |||||||| |||||||||| |||||||| |||||||
Sbjct 1538 TCATTTTGT-ATCACTGTAAATCTTCTTATTTGTTCTTTAACAAGTCGATTTTGTAATAG 1596
Query 1638 AATTCATGTGTTCAACAAATGATCTTACAGTAAATTAGATT 1678
| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1597 ATTTCATGTGTTCAATGAGTGATCTTACAGTAAATTAGATT 1637
> Ahg914174 jgi|Araly1|914174|Al_scaffold_0001_4428
Length=1347
Score = 920 bits (498), Expect = 0.0
Identities = 1035/1289 (80%), Gaps = 57/1289 (4%)
Strand=Plus/Plus
Query 216 GCGTATCTCACGC-ACAAGACGAGCTCCACAGTTTCCGGAAATATCTCCGATGGATGTGC 274
|||| || ||| | |||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct 83 GCGTCTCCCAC-CAACAAGACGAGCTACACAGCTTCCGAAAATACCTAAGATGGATGTGC 141
Query 275 GTAGATCAGTCGAGTCCTTGGACGGCGGTTCTATCATGGTCTATGTTCGTTGTTTTCACG 334
|||||||| || ||||| ||||| ||| |||| || ||| | ||||||| || |||||
Sbjct 142 GTAGATCACTCAAGTCCATGGACAGCGATTCTCTCTTGGACCGTGTTCGTCGTCTTCACC 201
Query 335 CTCGTTGTTCCTGCCA-CGTCTCACTTCATGCTCGCTTGCTCTGACTGCGATAGCCATCA 393
||||| |||||||| | | ||||||||| | ||||||||| | || ||||| || | ||
Sbjct 202 CTCGTCGTTCCTGCGATC-TCTCACTTCCTTCTCGCTTGCGCCGATTGCGACAGTTACCA 260
Query 394 CTCTAGGCCGTACGATTCCGTTGTTCAGCTTTCTCTTAGCAGTTTCGCTGCTC-TTTCGT 452
|| || || || |||||||||||||||||||| || ||||| |||| | | | || |
Sbjct 261 TTCAAGACCTTATGATTCCGTTGTTCAGCTTTCCCTAAGCAGCGTCGCCAC-CGTCTC-T 318
Query 453 TT-CTTTGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTCCTATTCTTTGAT 511
|| || |||||| |||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 319 TTCCTCTGTCTCACCAGATTCGTTAGCAAATACGGTCTCCGACGATTCCTCTTCTTTGAT 378
Query 512 AAGCTTTGGGATGAGAGCGAGACCGTTCGTCTAGGCTACACCAATCAGCTCAATAGATCG 571
|| || ||||| |||||||| || ||||| | | || |||||||| ||||||| |||
Sbjct 379 AAACTCTGGGACGAGAGCGAAACTGTTCGACGAAATTATACCAATCAACTCAATACTTCG 438
Query 572 CTTAAGATTCTCTCCTACTTCGTG-TCTCCTTGTTTCTTAGCGATGAGCT-CTTATAAGA 629
||| | ||| | |||||||| ||| || |||||||||| ||| ||||| | | || || |
Sbjct 439 CTTCATATTGTGTCCTACTTTGTGATC-CCTTGTTTCTCAGCAATGAG-TGCATACAAAA 496
Query 630 TATGGTGGTATGCTTCAGGAGCTTCTCAG-ATTCC-TTTCCTT-GGTAATGTTATCTTGA 686
| |||||||| || ||||| | |||| | || || ||| || || || ||| | || |
Sbjct 497 TTTGGTGGTACGCATCAGGTGGATCTC-GAATACCGTTT--TTAGGAAACGTTGTGTTAA 553
Query 687 GTGATACAGTTGCTTGTTTGATGGAGCTCTGCTCGTGG-TTGTACCGTACTACCGTGATC 745
|||||||||| |||||| | |||||||| || || ||| || || || || ||||| |||
Sbjct 554 GTGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTT-TATCGAACAACCGTAATC 612
Query 746 TTTCTGGTTTGTGTCCTCTTCCGTCTCATCTGCCATCTCCAGATTCTTAGGCTGCAAGAC 805
|| || |||||||| ||||| |||||||| |||||||| ||||| ||| | || ||||||
Sbjct 613 TTCCTTGTTTGTGTTCTCTTTCGTCTCATTTGCCATCTTCAGATCCTTCGTCTTCAAGAC 672
Query 806 TTTGCCCAGGTTTTCCAGATGGATTCAGATGTTGGTTCTATCTTGTCTGAACATCTCCGT 865
||||| || |||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 673 TTTGCTAAGCTTTTTCAGATTGATTCAGATGTTGGTTCTATATTGTCTGAACATCTTCGT 732
Query 866 ATCAGACGTCATCTGAGAATCATCAGCCACCGATACCGAACCTTTATATTGT-TG-TCCT 923
|| ||||||||||| |||||||||||||| |||| || |||| ||| | || | |
Sbjct 733 ATTAGACGTCATCTTAGAATCATCAGCCATAGATATCG-TTCTTT-CATTCTATGTTTAT 790
Query 924 TGA-TATTAGTCACTGGAAGTCAGTTTTAC-TCTCTGCTTATTACCACTAAGGCCTACGC 981
||| | || || |||||||||||||||| | |||||||||||||| || || || ||| |
Sbjct 791 TGATTCTT-GTTACTGGAAGTCAGTTTT-CTTCTCTGCTTATTACTACCAAAGCTTACAC 848
Query 982 TGAATTGAATATCTACAGAGCTGGAGAACTAGCACTATGTTCAATGACGCTGGTCACTGC 1041
|||| | ||||| ||||||||||||||||| || || ||||| ||||| | ||||||||
Sbjct 849 TGAAGTCAATATGTACAGAGCTGGAGAACTCGCTCTTTGTTCGATGACATTAGTCACTGC 908
Query 1042 ACTGCTCATTTTACTACGAAGTGCATCAAAGATCACACACAAGGCTCAGGCGGTGACTTG 1101
||| || || || ||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 909 ACTTCTGATACTATTACGAAGTGCATCAAAGATCACACATAAGGCTCAAGCTGTGACATG 968
Query 1102 TCTT-GCAGCCAAGTGGCATGTATGTGCGACGATAGAATCCTTTG---AGACTGTGGATG 1157
| || || || || ||||||||||| |||||| |||||||||||| |||| || ||||
Sbjct 969 T-TTAGCTGCAAAATGGCATGTATGCGCGACGTTAGAATCCTTTGATCAGACAGTAGATG 1027
Query 1158 GAGAGACTCCAAGGTTAGTTGATAG-AGCAAGCGGAC-ACGGAT-ACTATCCAACAG--A 1212
|||||||||||| || |||| ||| | ||| | || || ||| || | ||| | |
Sbjct 1028 GAGAGACTCCAACTTTGGTTGCTAGAAACAA-C-AACAAC-GATAAC-A-ACAATGGCCA 1082
Query 1213 TGATG--A-TA--ATG-GAGAATCAGATAGTGAAGATTATGGAGACGAAGAAGATGATTT 1266
||||| | || || ||||||||| || || || ||||| || |||||||||||| |
Sbjct 1083 TGATGTTATTACGTTGACAGAATCAGACAGCGACGAGTATGGTGATGAAGAAGATGATCT 1142
Query 1267 CGATAACAACAATC-TCATTCCTGCTTATGCTTAT-AGCACCATATCATTCCAAAAACGG 1324
|| || || || | | |||||||||||||||| | || ||||| |||||||||||||||
Sbjct 1143 AGACAATAATAA-CATTATTCCTGCTTATGCTT-TCAGTACCATGTCATTCCAAAAACGG 1200
Query 1325 CAAGCTCTAGTGAATTACTTTGAGAACAATAGATCAGGAATCACGGTGTTTGGGTTTACA 1384
||||||||||||| ||| |||||||| || ||| |||||||||| |||| ||||||||||
Sbjct 1201 CAAGCTCTAGTGAGTTATTTTGAGAATAACAGAGCAGGAATCACAGTGTATGGGTTTACA 1260
Query 1385 CTTGATAGAAGCACTCTCCATACAATCTTCGGTA-TCGAAATGTCGCTTGTTCTCTGG-T 1442
||||||||| | ||||||||||||||||| || | | ||| |||| |||||||||||| |
Sbjct 1261 CTTGATAGAGGTACTCTCCATACAATCTTTGG-ACTTGAATTGTCTCTTGTTCTCTGGCT 1319
Query 1443 TACTTGGTAAGACCATTGGAATTTCTTGA 1471
| || ||||| ||||||||||||||||||
Sbjct 1320 T-CTCGGTAAAACCATTGGAATTTCTTGA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5