BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20310.1
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479554 jgi|Araly1|479554|fgenesh2_kg.3__2255__AT3G20310.1 1611 0.0
Ahg474196 jgi|Araly1|474196|fgenesh2_kg.1__4150__AT1G50640.1 272 7e-72
> Ahg479554 jgi|Araly1|479554|fgenesh2_kg.3__2255__AT3G20310.1
Length=1851
Score = 1611 bits (872), Expect = 0.0
Identities = 1150/1275 (90%), Gaps = 55/1275 (4%)
Strand=Plus/Plus
Query 67 tctcttcttcatcacattacttctGGCTTTACATCTTTTTTCTTCTCCATGAGGAAAGGG 126
|||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 40 TCTCTTCTCCATCACATTACTTCTGGTTTTACACCTTTCTTCTTCTCCATGAGGAAAGGG 99
Query 127 AGAGGCTCTTCCGTCGTTGGACCCGCCCTTCCAGTAACCGCCGGTGGATCTGTGAAGGAG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 AGAGGCTCTTCCGTCGTTGGACCCGCCCTTCCAGTAACCGCCGGTGGATCTGTGAAGGAG 159
Query 187 CCGAGGTATAGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCAGCTGAGATCCGTGAT 246
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 160 CCGAGGTATAGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCGGCTGAGATCCGTGAT 219
Query 247 CCATTaaaaaaaTCTCGTGTCTGGCTCGGTACTTTCGATTCCGCCGTAGATGCTGCACGC 306
|||||||| || |||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 220 CCATTAAAGAAGTCTCGTGTTTGGCTCGGTACTTTCGATTCCGCCATAGAAGCTGCACGC 279
Query 307 GCTTACGATACCGCCGCACGTAACCTCCGTGGTCCAAAGGCCAAGACCAATTTCCCGATC 366
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 280 GCTTACGATACCGCCGCACGTAACCTCCGTGGTCCAAAAGCTAAGACCAATTTCCCGATC 339
Query 367 GATTGttctccttcttctcctctccaacctctcacctacctccacaatcaaaacctctgt 426
||||| |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 340 GATTGCTCTCCTTCTTCTCCTCTCCAACCTCTCAACTACCTCCAGAATCAGAACCTCTGT 399
Query 427 tctcctccGGTGATTCAGAACCAGATCGATCCGTTTATGGACCATCGGTTATACGGCGGA 486
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TCTCCTGCGGCGAATCAGAACCAGATCGATCCGTTTATGGACCATCGGTTATACGGCGGA 459
Query 487 GGTAATTTCCAGGagcagcagcagcagcagATTATTAGTCGGCCGGCGAGTAGCAGCATG 546
|||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 460 GGTAATTTCCAGGAGCAGCA--A-CAG-A--TTATTAGTCGGCCGGCGAGTAGCAGCATG 513
Query 547 AGCAGCACCGTTAAATCTTGTAGCGGACCGAGACCGATGGAAGCCGCGGCGGCGTCTTCG 606
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 AGCAGCACCGTCAAATCATGTAGCGGACCGAGACCGATGGAAGCCGCGGCGGCGTCTTCG 573
Query 607 TCGGTGGCGAAACCGTTACATGCGATTAAGAGATATCCGAGAACTCCACCGGTAGCTCCG 666
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |||
Sbjct 574 TCGGTGGCGAAACCGTTACATGCGATAAAGAGATACCCGAGGACTCCACCGGTGGCCCCG 633
Query 667 GAGGATTGTCATAGCGACTGCGATTCTTCGTCGTCTGTTATTGACGACGGAGATGATATC 726
||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 634 GAGGATTGTCATAGCGATTGCGATTCTTCGTCGTCGGTAATTGACGACGGAGACGATATA 693
Query 727 GCATCTTCGTCTTCCCGCCGGAAAACGCCGTTTCAGTTTGATCTTAATTTCCCGCCGTTG 786
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 694 GCATCTTCGTCTTCGCGCCGGAAACCGCCGTTTCAGTTTGATCTTAATTTCCCGCCGTTG 753
Query 787 GATGGCGTTGACTTATTCGCTGGCGGGATAGATGATCTCCACTGTACCGATCTACGTCTC 846
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 754 GATGGCGTTGACTTATTCGCTGGCGGGACAGATGATCTCCACTGTACCGATCTACGTCTC 813
Query 847 TGATTT-GCTGCTTTACaaaaaaa-aTCCGTTGATTACACACaaaaaaaaTTCTCAAATT 904
|||||| | || | | ||||||| ||||||||||| ||||||| || | ||
Sbjct 814 TGATTTCG-TGGTAAA-AAAAAAAGATCCGTTGATTT-ACACAAA-----TT-T----TT 860
Query 905 TTACAAAATGATAACTTTATGCTC-TTTTGTTTTTCCATTTTCCTTTGATATCATATTga 963
||||||||| || ||| ||||| |||| |||||| |||||||||||||||||||||||
Sbjct 861 --ACAAAATGAAAATTTTCTGCTCCTTTTTTTTTTC-ATTTTCCTTTGATATCATATTGA 917
Query 964 aagagaaaaaaa-ggaagaacaaaaaaaaaaGATTGAGCGTGATGATTTT-ATCATCAAC 1021
|||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 918 AAGAAAAAAAAAAGGAAGAACAAAAAAAA--GATTGAGCGTGATGATTTTTATCATCAAC 975
Query 1022 GAAGATGATGACGATTAAAAAGAGAGAGAGATTGTGTTAAGATCTGTTACTGTAAGAACC 1081
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 976 GAAGATGATGACGATTAAAAAGAGAGAGAGAGTGTGTTAAGATCTTTTACTGTAAGAACC 1035
Query 1082 AGATCTGGGTTTCATTTTTATCTGTTTCTTCTTATAAAAGATCCAACAACCCTTTGTTAC 1141
||||||||||||| ||| | | ||| || ||| | || | ||| |
Sbjct 1036 AGATCTGGGTTTCGTTTCAACCC-TTTGTT---ATACAT-AT--AT-AAC--------A- 1078
Query 1142 ATATATATAACATTCTGAAGCTGGTGATGATTTCTGAATGATTCAAATCCATTATCTTTA 1201
||| | | | | |||| || ||||||||||| |||||||||||||||| |||||||
Sbjct 1079 -TAT-TCTGA-AG-CTGA---TGATGATGATTTCTAAATGATTCAAATCCATAATCTTTA 1131
Query 1202 GATTTCTACTTATTCATAGAGTGTCCCCTGATGTAAGTAGGAAGCTGCATTTACA-TAGT 1260
||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct 1132 GATTTCTACTTCTTCATAGAGTATCCCCTGATGTGAGTAGGAAGCTACATTTACACTA-T 1190
Query 1261 ATGTAACAGAACCACACAGGGCACAAGTATTTGTTTGTGTTTTGTCTCTTGGCTTGATCT 1320
|||||||||||||||||||||||||| ||||||||||| | | |||||||||||| ||||
Sbjct 1191 ATGTAACAGAACCACACAGGGCACAAATATTTGTTTGTCTCTCGTCTCTTGGCTTCATCT 1250
Query 1321 TGATCAATTCAGGGT 1335
|||| ||||||||||
Sbjct 1251 TGATTAATTCAGGGT 1265
Score = 878 bits (475), Expect = 0.0
Identities = 731/843 (87%), Gaps = 63/843 (7%)
Strand=Plus/Plus
Query 1128 CAACCCTTTGTTACATATATATAAC--ATTCTGAAGCTG--G-TGATGATTTCTGAATGA 1182
||||||||||||| | ||||||||| |||||||||||| | ||||||||||| |||||
Sbjct 1053 CAACCCTTTGTTATACATATATAACATATTCTGAAGCTGATGATGATGATTTCTAAATGA 1112
Query 1183 TTCAAATCCATTATCTTTAGATTTCTACTTATTCATAGAGTGTCCCCTGATGTAAGTAGG 1242
||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 1113 TTCAAATCCATAATCTTTAGATTTCTACTTCTTCATAGAGTATCCCCTGATGTGAGTAGG 1172
Query 1243 AAGCTGCATTTACA-TAGTATGTAACAGAACCACACAGGGCACAAGTATTTGTTTGTGTT 1301
||||| |||||||| || ||||||||||||||||||||||||||| | | || || |
Sbjct 1173 AAGCTACATTTACACTA-TATGTAACAGAACCACACAGGGCACAA--A--T-ATT-TG-T 1224
Query 1302 TTGTCTCTTGGCTTGATCTTGATCAATTCAGGGTTTCTTCTATTCAACAAGTAAAGCTTA 1361
||||||| | | | ||||| | |||| |||| ||| || | | |
Sbjct 1225 TTGTCTC-T--CGT-CTCTTG-GC--TTCA-----TCTT-GATT----AA-T-----TCA 1261
Query 1362 GTGGTTCTCTGAGATGGAAGCAATAAAAAGA-TGAAAGGAAGAAAGACGGTGAAGCTCCT 1420
| || ||| |||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 1262 G-GG-TCT-TGAGATGGAAGCAATAAAAAGATTG-AAGAAAGAAAGACGGTGAAGCTCCT 1317
Query 1421 TTGCTATCTAATTGGGTGATTCGAAGA-GGAAGTTAGAATACTCATTGTCATTGTTAAGC 1479
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 1318 TTGCTATCTAATTGGGTGATTCGAAGAGGGATGTTAGAATACTCATTGTCATTCTTAAGC 1377
Query 1480 CTCAAGTTTTCATTCATCAGCGA-GGAGACAAGAAAGGCTTTCCCTTTTGTGTACCCAAT 1538
|| |||| ||||||||||||| | |||||||||| ||||||||||||| ||||| | ||
Sbjct 1378 CTGAAGTATTCATTCATCAGC-ATGGAGACAAGAGAGGCTTTCCCTTTCGTGTA-TCTAT 1435
Query 1539 -GAATATTTTGGATGGTGAAGAACATAGAGATTAAGGGCATGGTCAATGGGCGGTGAGTG 1597
| | |||||||| | || |||| |||||||||||||| ||||||||||||||||||
Sbjct 1436 CG-A-CGTTTGGATGTTAAACAACAGCGAGATTAAGGGCATTGTCAATGGGCGGTGAGTG 1493
Query 1598 GTTTTGTTGTGATCGATAAAGCTCAATGAGCACAGGCCAAATCTTTAGGTTAAAGTTTGG 1657
||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1494 ATTTGGGTGTGATCGATAAAGCTCAATGACCAAAGGCCAAATCTTTAGGTTAAAGTTTGG 1553
Query 1658 TGGCTGAGATGATTGTTTTGATCTTTAAGAGCTGTGGGTTGAGGTGGCAGAATT-CGTTG 1716
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 1554 TGGCTGAGATGATTGTTTTGATCTTTAAGAGCTGTGGGTTGGGGTGGCA-AATTTCGTTG 1612
Query 1717 TGTGTTTGACCTTTTTGATTTGAATTTGCTGGTAGAGAGTTTTCCCAATTTTGGTATCTA 1776
||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 1613 TGT-TTTGACCTTTTTGATTTGAATTTGCTGGTAGAGAGTTGTCCCAAATTTGGTACCTA 1671
Query 1777 CTTTGCTTCTATGCCACGGATTCAGACAGTGAATCTTTGTGTCTGAAGCAAAAACCGAGT 1836
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1672 CTTTGCTTCTATGCCACGGATTCAGACAGTGAATCTTTGTGTCTAAAGCAAAA-CCGAGT 1730
Query 1837 AtttttttACCGTTTTGGGGTAGGCTTCTTCTTAACTTAAAGTGGAAGTCAAAAGCAATG 1896
|||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1731 -TTTTTTAACCGTTTTGGG-TAGGCTTCTTCTTAAGTTAAAGTGGAAGTCAAAAGCAATG 1788
Query 1897 TCTTGTTATTTTC----ACTGTAAC-GATTTAAGAC---AACTGATCTCAAGTCGCTTTT 1948
||||||| |||| ||| | || |||||| ||| |||||||||||||| ||||||
Sbjct 1789 TCTTGTTTTTTTTTTTTACTCTTACCGATTTATGACTTTAACTGATCTCAAGTGGCTTTT 1848
Query 1949 CCT 1951
|||
Sbjct 1849 CCT 1851
> Ahg474196 jgi|Araly1|474196|fgenesh2_kg.1__4150__AT1G50640.1
Length=1218
Score = 272 bits (147), Expect = 7e-72
Identities = 275/334 (82%), Gaps = 20/334 (6%)
Strand=Plus/Plus
Query 67 tctc-ttcttcatca-cattacttctGGCTTTACATCTTTTTTCTTCT-CCATGAGGAAA 123
|||| |||| ||| | |||||||||||||||| | |||| || || ||||||||| |
Sbjct 81 TCTCTTTCTCCATTACCATTACTTCTGGCTTT-C-TCTTAAATCCACTACCATGAGGAGA 138
Query 124 GGGAGAGGCTCTTCCGTCGTTGGACCCGCCCT-TC-CAGTAACCG-C--CGGTGGATCTG 178
|| ||||||||||||| || | | || | ||| | | || ||| | | |||||||
Sbjct 139 GGAAGAGGCTCTTCCGCCG-TCG-CCGGACCTACCGCCGTTGCCGCCATCAACGGATCTG 196
Query 179 -TGAAGGAGC-CGAGGTAT-AGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCAGCTG 235
| ||| | | ||| | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 197 TTAAAGAAACACGA--T-TCAGAGGCGTTAGGAAGAGACCTTGGGGACGATTCGCAGCTG 253
Query 236 AGATCCGTGATCCATTaaaaaaaTCTCGTGTCTGGCTCGGTACTTTCGATTCCGCCGTAG 295
||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||| |
Sbjct 254 AGATCCGTGATCCATGGAAAAAAGCTCGTGTCTGGTTAGGTACTTTCGATTCCGCCGTCG 313
Query 296 ATGCTGCACGCGCTTACGA-TACCGCCGCACGTAACCTCCGTGGTCCAAAGGCCAAGACC 354
| ||||| ||||||||||| | ||||||| |||||||||||||||||||| ||||| ||
Sbjct 314 AAGCTGCTCGCGCTTACGACT-CCGCCGCTCGTAACCTCCGTGGTCCAAAAGCCAAAACT 372
Query 355 AATTTCCCGATCGATTGttctccttcttctcctc 388
|||||||||||||||| |||| || |||||||||
Sbjct 373 AATTTCCCGATCGATTCTTCTTCTCCTTCTCCTC 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75190143630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5