BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20320.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929958 jgi|Araly1|929958|scaffold_302415.1 1960 0.0
> Ahg929958 jgi|Araly1|929958|scaffold_302415.1
Length=1188
Score = 1960 bits (1061), Expect = 0.0
Identities = 1142/1182 (97%), Gaps = 1/1182 (0%)
Strand=Plus/Plus
Query 97 ttttttATTGAATTTGGAAGGATGATTGGGAATCCAGTAATTCAAGTTCCATCATCACTA 156
|||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 TTTTTTATTGGATTTGGAA-GATGATTGGGAATGCGGTAATTCAAGTTCCATCATCACTA 59
Query 157 ATGCCATCATCCTCCATGATTGCTTGTCCTCGAGTTTCACCCAATGGGGTTCCTTATCTT 216
||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 60 ATGCCATCATCTTCCATGATTGCTTGCCCTCGAGTTTCTCCCAATGGGATTCCTTATCTT 119
Query 217 CCACCAAAACCTAGAACTAGGCATTTAGTGGTCAGAGCTGCATCCAATTCCGATGCTGCT 276
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 CCACCGAAACCTAGAACTAGGCATTTAGTGGTCAGAGCTGCATCCAATTCCGACGCTGCT 179
Query 277 CATGGTCAACCATCGTCTGATGGGGGGAAGAATCCTCTCACCGTTGTTTTGGATGTGCCC 336
|||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 180 CATGGTCAACCATCGTCTGATGAGGGGAAGAATCCGCTCACGGTTGTTTTGGATGTGCCA 239
Query 337 AGGAATATATGGAGACAGACTTTAAAACCTTTGAGTGATTTTGGGTTTGGTAAGAGAAGT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGAATATATGGAGACAGACTTTAAAACCTTTGAGTGATTTTGGGTTTGGTAAGAGAAGT 299
Query 397 ATTTGGGAAGGTGGTGTTGGTTTGTTTATTGTCTCTGGAGCTACTCTTCTTGCTCTTAGC 456
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GTTTGGGAAGGTGGGGTTGGTTTGTTTATTGTCTCTGGAGCTACACTTCTTGCTCTTAGC 359
Query 457 TGGGCTTGGTTGCGAGGTTTTCAAATGCGGTCGAAGTTTAGGAAATATCAGACTGTGTTT 516
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 360 TGGGCTTGGTTGCGAGGGTTTCAAATGCGTTCCAAGTTTAGGAAATATCAGACTGTGTTT 419
Query 517 GAGCTTAGTCATGCTTCTGGTATTTGCACGGGAACACCGGTTAGGATCCGTGGGGTTACT 576
|||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGCTTAGGCATGCATCAGGCATTTGCACGGGAACACCGGTTAGGATCCGTGGGGTTACT 479
Query 577 GTTGGTACGATTATCCGTGTTAATCCTTCCTTGAAGAATATTGAAGCTGTTGCTGAGATA 636
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GTTGGTACGATAATCCGTGTTAATCCTTCTTTGAAGAATATTGAAGCTGTTGCTGAGATA 539
Query 637 GAAGATGATAAGATTATTATCCCGAGGAATTCATTGGTTGAGGTGAATCAGTCTGGTCTT 696
|| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 540 GAGGATGATAAGATTATTATCCCGAAGAATTCACTGGTTGAGGTGAATCAGTCTGGTCTT 599
Query 697 CTAATGGAAACTATGATCGACATTATGCCTAGGAATCCGATACCAGAACCTTCAGTAGGA 756
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 CTAATGGAAACTATGATCGACATTATGCCTAGAAATCCGATACCAGAACCTTCAGTAGGA 659
Query 757 CCTCTGCATCCTGAATGTGGTAAGGAAGGTCTGATCGTTTGTGATAGGCAGACAATAAAA 816
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 660 CCTCTGCATCCTGAATGTGGTAAAGAAGGTCTGATCGTTTGTGATAGGCAGACGATAAAA 719
Query 817 GGAGTGCAAGGAGTTAGTTTAGATGAATTAGTTGGAATTTTCACTCGTATTGGACGCGAA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAGTGCAAGGAGTTAGTTTAGATGAATTAGTTGGAATTTTCACTCGTATTGGACGCGAA 779
Query 877 GTTGAGGCCATTGGTGTTGCCAATACGTATTCGCTTGCTGAGAGAGCTGCTTCGGTTATT 936
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GTAGAGGCCATTGGTGTTGCCAATACGTATTCGCTTGCTGAGAGAGCGGCTTCGGTTATT 839
Query 937 GAGGAAGCAAGGCCATTGCTCAAAAAGATTCAAGCCATGGCTGAAGATGCTCAACCTTTG 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGGAAGCAAGGCCATTGCTCAAAAAGATTCAAGCCATGGCTGAAGATGCTCAACCTTTG 899
Query 997 CTCTCTGAGTTTCGTGATAGCGGCTTGCTCAAGGAAGTTGAGTGTCTTACTCGAAGCCTT 1056
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 CTCTCTGAGTTTCGTGATAGCGGCTTGCTCAAGGAAGTTGAGTGTCTTACTAGAAGCCTT 959
Query 1057 ACCCAAGCTTCTGACGATTTGAGAAAGGTTAATTCGTCAATTATGACTCCTGAGAATACA 1116
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 960 ACCCAAGCTTCTGACGATTTGAGAAAGGTTAATTCGTCAATTATGACACCTGAAAATACA 1019
Query 1117 GAACTCATACAGAAGTCAATCTACACTCTGGTTTATACTTTGAAGAACGTCGAGAGTATA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAACTCATACAGAAGTCAATCTACACTCTGGTTTATACTTTGAAGAACGTCGAGAGTATA 1079
Query 1177 AGCTCAGATATTCTGGGATTCACAGGAGATGAAGCCACAAGAAAAAACCTTAAACTACTC 1236
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 AGCTCAGATATTCTGGGGTTCACAGGCGATGAAGCCACAAGAAAAAACCTTAAACTACTC 1139
Query 1237 ATCAAATCCCTAAGCAGGCTACTATGATCAGCCTGTAGATTT 1278
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 ATCAAATCCCTCAGCAGGCTACTATGATCAGCCTGTAGATTT 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5