BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20330.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929959 jgi|Araly1|929959|scaffold_302416.1 1829 0.0
> Ahg929959 jgi|Araly1|929959|scaffold_302416.1
Length=1234
Score = 1829 bits (990), Expect = 0.0
Identities = 1094/1143 (96%), Gaps = 11/1143 (1%)
Strand=Plus/Plus
Query 299 CGAATTAGCATCCTGCGCAAGAATGTCTATTGCATCATCACTTACTTCAGCCACACTTTG 358
||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 CGAATTAGCATCC--CGCCAGAATGTCTATTGCGTCATCACTTTCTTCAGCCACACTTTG 58
Query 359 CGGCGCCTCAGTTTTTCCTAAAGCATTAGCCTGCAGCTCTGAGTTCCCTATCAATCTTCC 418
||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||
Sbjct 59 CGGCGCCTCAGTTTTTCCTAAAGCATTAGGCTACAGCTCTGAGTTCCCAAGCAATCTTCC 118
Query 419 CAGCCCTTTTGAAAGTTCAAAGATTTGTTTGACTTCGTTTCCTGCCTCTAGGGATCTCAA 478
||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 119 CAGTCCTTCTGAAAGTTCAAAGATTTGTTTGACTTCATTTCCTGCCTCTAGGGATCCCAA 178
Query 479 GAAAAATGCTACTTTGAATCTGACTCGAAATGTT-G---G-TCC-A-G--TCAGGTGTCA 529
|||||||||||||| |||||| || ||||||||| | | ||| | | ||||||||||
Sbjct 179 GAAAAATGCTACTTGGAATCTAACCCGAAATGTTGGTCCGATCCAAGGAATCAGGTGTCA 238
Query 530 TGCTATGCAAGCTGGGACGAGGGAGTTGAAGAAATTTGAACTTAGTGATGTGATTGAAGG 589
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 239 TGCTATGCAAGCTGGAACGAGGGAATTGAAGAAATTTGAACTTAGTGATGTGATTGAAGG 298
Query 590 GAAACAGTTTGATAGAGAGATGCTAAGCGCTATATTCGATGTTGCACGCGAAATGGAAAA 649
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 GAAACAATTTGATAGGGAGATGCTAAGCGCTATATTCGATGTTGCACGAGAAATGGAAAA 358
Query 650 GATAGAAAAGAGCTCTTCACAAAGTGAAATCCTCAAGGGTTATTTAATGGCTACCCTCTT 709
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATAGAAAAGAGCTCTTCCCAAAGTGAAATCCTCAAGGGTTATTTAATGGCTACCCTCTT 418
Query 710 TTATGAGCCTTCTACCCGTACCAGGCTTTCATTTGAATCTGCTATGAAACGCCTTGGAGG 769
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 TTATGAGCCTTCTACCCGTACCAGGCTTTCATTTGAATCTGCCATGAAACGCCTTGGAGG 478
Query 770 TGAAGTCTTAACTACTGAGAACGCTAGAGAGTTTTCGTCTGCCGCGAAAGGGGAAACACT 829
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 TGAAGTCTTAACTACTGAGAACGCTAGAGAGTTTTCGTCTGCCGCAAAAGGGGAAACACT 538
Query 830 TGAAGACACAATAAGAACAGTGGAGGGTTATTCAGATATAATTGTGATGCGACATTTTGA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGAAGACACAATAAGAACAGTGGAGGGTTATTCAGATATAATTGTGATGCGACATTTTGA 598
Query 890 AAGCGGTGCTGCAAGAAAAGCTGCAGCTACTGCCAATATACCTGTCATTAATGCAGGTGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGCGGTGCTGCAAGAAAAGCTGCAGCTACTGCCAATATACCTGTCATTAATGCAGGTGA 658
Query 950 TGGTCCTGGAGAGCATCCTACTCAGGCTCTATTGGACGTCTATACCATCCAAAGTGAAAT 1009
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TGGTCCTGGAGAGCATCCTACTCAGGCTCTATTGGACGTCTATACAATCCAAAGTGAAAT 718
Query 1010 TGGAAAATTAGATGGCATCAGTGTAGCCTTAGTTGGAGACCTTGCCAACGGAAGGACTGT 1069
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 719 TGGAAAATTAGATGGCATCAGTGTAGCCTTAGTTGGAGATCTTGCCAACGGAAGGACAGT 778
Query 1070 GCGGTCTCTTGCATACTTGCTTGCCAAGTTCAAAGACGTGAAGATCTACTTTGTTTCCCC 1129
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 CCGGTCTCTTGCATACTTGCTTGCCAAGTTTAAAGACGTGAAGATCTACTTTGTTTCCCC 838
Query 1130 TGAAATTGTGAAAATGAAGGATGATATAAAAGACTATTTGACATCAAGCGGGGTTGAATG 1189
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 839 TGAAATTGTGAAAATGAAGGATGATATAAAAGACTATTTGACATCAAACGGGGTCGAATG 898
Query 1190 GGAAGAAAGTTCAGATTTAATGGAAGTAGCATCCAAGTGTGATGTAGTTTATCAAACACG 1249
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 GGAAGAAAGTTCGGATTTAATGGAAGTAGCATCCAAGTGTGATGTAGTTTATCAAACCCG 958
Query 1250 AATCCAAAGAGAGAGGTTTGGAGAAAGGCTGGACCTTTACGAAGCAGCTCGTGGGAAGTA 1309
||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 959 AATCCAAAGAGAGCGGTTTGGAGAAAGGCTTGACCTTTATGAAGCAGCTCGTGGGAAGTA 1018
Query 1310 TATCGTAGACAAGGATCTGTTAGGAGTGATGCAGAAAAAAGCTATTATCATGCATCCTTT 1369
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TATCGTGGACAAGGATCTATTAGGAGTGATGCAGAAAAAAGCTATTATCATGCATCCTTT 1078
Query 1370 ACCGAGATTGGATGAAATCACCGCAGATGTTGATGCTGATCCAAGAGCTGCCTACTTCAG 1429
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACCAAGATTGGATGAAATCACTGCAGATGTTGATGCTGATCCAAGAGCTGCCTACTTCAG 1138
Query 1430 ACA 1432
|||
Sbjct 1139 ACA 1141
Score = 111 bits (60), Expect = 1e-23
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1402 ATGCTGATCCAAGAGCTGCCTACTTCAGACAAGCAAAGAACGGTTTGTTCATTAGAATGG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATGCTGATCCAAGAGCTGCCTACTTCAGACAAGCAAAGAACGGTTTGTTCATTAGAATGG 1200
Score = 60.2 bits (32), Expect = 5e-08
Identities = 47/54 (87%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1484 CGG-TTGGTGATT-GGATAGTTCATGGTCGTTAAGTTAAATCCTTTAATGGACT 1535
||| ||| | ||| | || ||||||||||||||||||||||||||||||| |||
Sbjct 1181 CGGTTTGTTCATTAGAATGGTTCATGGTCGTTAAGTTAAATCCTTTAATGAACT 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5