BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20340.1

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929960 jgi|Araly1|929960|scaffold_302417.1                        582    8e-166


> Ahg929960 jgi|Araly1|929960|scaffold_302417.1
Length=392

 Score =  582 bits (315),  Expect = 8e-166
 Identities = 363/386 (94%), Gaps = 4/386 (1%)
 Strand=Plus/Plus

Query  64   AAAATAGAAACAAAAAATGGGGAATTGTTTAAGGCATGAATCAGAAATGCATTGGGCTGG  123
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5    AAAATAGAAAAAAAAAATGGGGAATTGTTTAAGGCATGAATCAGAAATGCATTGGGCTGG  64

Query  124  TGAAGACTGGGATGAATTCATCACAGAAGATGAAGAAGATCATCATTATAGCTCTAAAAC  183
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  65   TGAAGATTGGGATGAATTCATCACAGAAGATGAGGAAGATCATCATTATAGCTCTAAAAC  124

Query  184  CACAAGAGATGGCAAACCAGTAATTGTAACACGTGACAGTAAATCCTCTGTTCCATCTCA  243
            ||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  125  CACCAGAGATGGGAAAACAGTAGTTGTAACACGTGACAGTAAATCCTCTGTTCCATCTCA  184

Query  244  TGAGATCAAGATCAGGCTCACGAAGAAGCAACTCCATGATTTACTGAGTAAAGTCAACGT  303
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  185  TGAGATCAAGATCAGGCTCACGAAGAAACAACTCCATGATTTACTGAGTAAAGTCAACGT  244

Query  304  CCATGACTTGACCTTCCAGCAACAAAC--CTT-CTCATGTCCAATCCTGAACAATCGCGG  360
            ||||||||||||||| || |||||  |  ||| ||||||||||| |||||||||||| ||
Sbjct  245  CCATGACTTGACCTTTCATCAACAGGCTGCTTTCTCATGTCCAAGCCTGAACAATCGTGG  304

Query  361  GTACGAAGAAGCCAATCAACAACGGTTATGGAGACCGGTTCTACAGAGCATACCAGAAGT  420
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct  305  GTACGAAGAAGCCAATCATCAACGGTTATGGAGACCGGTTCTGCAGAGCATACCAGAGGT  364

Query  421  TAACTGAG-TTTTGTTTTCAGAGATG  445
            ||| |||| |||| ||||||||||||
Sbjct  365  TAATTGAGGTTTTTTTTTCAGAGATG  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22053930442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5