BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20350.1
Length=2671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479559 jgi|Araly1|479559|fgenesh2_kg.3__2260__AT3G20350.1 3397 0.0
Ahg923516 jgi|Araly1|923516|scaffold_104797.1 1122 0.0
> Ahg479559 jgi|Araly1|479559|fgenesh2_kg.3__2260__AT3G20350.1
Length=2480
Score = 3397 bits (1839), Expect = 0.0
Identities = 2161/2311 (94%), Gaps = 43/2311 (2%)
Strand=Plus/Plus
Query 67 CTCTCTCTTTCGTTACAGTTC----C---CTAATCAAGCAAGTTGCAT-ATCACGAGctc 118
||||||||||||||||||||| | | || |||||||||||||| ||||| |||||
Sbjct 1 CTCTCTCTTTCGTTACAGTTCTGATCAAGC-AAGCAAGCAAGTTGCATCATCACAAGCTC 59
Query 119 tctcaactctcaatc--caatcc--atctctctctcacgcattttcgtttgtttcttc-g 173
| ||||||||||||| |||||| |||||||| ||||||||||||| ||||||||| |
Sbjct 60 TTTCAACTCTCAATCATCAATCCATATCTCTCTTTCACGCATTTTCGGCTGTTTCTTCGG 119
Query 174 ttttcctcttttcagattcttctcttcgattcttcACATTGATAAAACTTGTCTA---TG 230
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 120 TTTT-CTCTTTTCAGATTCTTCTCTTCGATTCTTCACATTGA-AAAACTTGTCTATGGTG 177
Query 231 GTGGTTGTTACGTCGATTGAGTAGATGAAGTTCACCGGAAAATCAAATTTGACGGCTACA 290
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 GTGGTTGTTACGCCGATTGAGTAGATGAAGTTCACCGGAAAATCAAATTCGACGGCTACA 237
Query 291 TTACCCGCAACTGTCCCAAATATCAGGGATATTCATAGAAGGAGAGCGCGAAAACCGAGC 350
|| || ||||||||||||||| |||||| || ||||| | |||||| |||||||||||||
Sbjct 238 TTTCCTGCAACTGTCCCAAATCTCAGGGCTAGTCATATACGGAGAGTGCGAAAACCGAGC 297
Query 351 TTCACTCGTCAACGAAGATCTGGCGTGTCTGTCAGGAGGCTAAGCAGGCCGGAGACTCCT 410
||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 298 TTCACTCGTCAGCGAAGATCCGGCGTCTCTGTCAGGAGGCTAAGAAGGCCGGAGACTCCT 357
Query 411 CA-ATTGAAATCGAAGGTGGAGGATCAAAACATTGAGCGATGCGGCGGGGTTGAAGATGG 469
| ||||||||||||||||||| |||| |||| ||||||||||| || |||||||||||
Sbjct 358 -ATATTGAAATCGAAGGTGGAGAATCATAACAGTGAGCGATGCGTCGCGGTTGAAGATGA 416
Query 470 TGATAACGAGGATGATGATTGTAATAAGATGCGTTGTCAGGAACGGAGTAGGAGTGTACG 529
|||| ||||||| ||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 417 TGATTACGAGGAAGATGATTGTAATAAGATGCGTTGCCAGGAACGAAGGAGAAGTGTACC 476
Query 530 GCCTGATACTGTTAGGAAACTTGCTGCCGGAGTGTGGCGATTGCGAGTCCCGGATGCGGT 589
||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 477 GCCGGATACTGTAAGGAAACTTGCGGCCGGAGTGTGGCGATTGCGAGTCCCGGATGAGGT 536
Query 590 TTCTAGCGGCGGAGATAAGAGGAGCAAGGATCGGTTACGGTTTCAGGAAACTGCTGGTCC 649
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 537 TTCTAGCGGCGGAGATAAGAGGAGCAAGGATCGGTTAGGGTTTCAGGAAACTGCTGGTCC 596
Query 650 TGCTGGAAACTTGGGTCCTCTGTTTTATTATCACCACCATGATGACAAACA---TTCTGG 706
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 597 TGCTGGACACTTGGGTCCTCTGTTTTATTAT---CACCATGATGACAAACATTCTTCTGG 653
Query 707 CTTTCAAAGCAACAATTCAAGAAACAAGCATAGTAGATTCTTGTGTAAGCATGAGCCTTC 766
|||||||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 654 CTTTCAAACCAATAATTCAGGAAACAAGCATAGTGGATTCTTGTGTAAGCATGAGCCTTC 713
Query 767 AG-TTCCATTTCCCCACTGCGCGATGGAGGGAGCAACAAAATGGGATCCCATCTGCTTGG 825
| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 714 -GATTCCATTTCCTCACTGCGCGATGGAGGGGGCAACAAAATGGGATCCCATTTGCTTGG 772
Query 826 ATACAAGGGATGATGTACACCAAATCTATAC--CAACGTGAAGTGGAATAATCAACAAGT 883
||||||||||||| ||||||||||| | ||| |||||||| || |||||||||||||||
Sbjct 773 ATACAAGGGATGAAGTACACCAAAT-T-TACTGCAACGTGACGTTGAATAATCAACAAGT 830
Query 884 GAATGATGTTTCATTAGCTTCTTCTATTGAATTGAAACTTCAGGAAGCTCGTGCTTGCAT 943
|||| ||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 831 GAATTCTGTTTCACTAGGTTCTTCTATTGAGTTGAAACTCCAGGAAGCTCGTGCTTGCAT 890
Query 944 TAAGGATCTTGAGAGTGAGAAGCGATCTCAGAAAAAGAAGCTTGAGCAGTTCCTGAAGAA 1003
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 891 TAAGGACCTTGAGAGTGAGAAGCGATCTCAAAAAAAGAAGCTTGAGCAGTTCCTGAAGAA 950
Query 1004 AGTTAGCGAGGAGAGGGCAGCTTGGCGGAGCAGAGAGCATGAGAAGGTCCGAGCAATTAT 1063
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 951 AGTTAGCGAGGAAAGGGCAGCTTGGCGGAGCAGGGAGCATGAGAAGGTCCGAGCAATTAT 1010
Query 1064 TGATGACATGAAAGCTGACATGAACCAGGAAAAGAAGACTCGTCAGAGATTAGAAATCGT 1123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1011 TGATGACATGAAAGCTGACATGAACAAGGAAAAGAAGACTCGTCAGAGATTAGAAATCGT 1070
Query 1124 CAATTC-AAAATTAGTCAATGAGCTTGCAGATTCAAAGTTAGCAGTAAAGCGTTACATGC 1182
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAA-TCTAAAATTAGTCAATGAGCTTGCAGATTCAAAGTTAGCAGTAAAGCGTTACATGC 1129
Query 1183 ATGATTACCAACAGGAAAGGAAGGCAAGAGAATTGATCGAAGAAGTTTGTGATGAACTGG 1242
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 1130 ATGATTACCAACAGGAAAGGAAGGCAAGAGAATTGGTTGAAGAAGTTTGTGATGAACTTG 1189
Query 1243 CAAAGGAAATAGAAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGCGAATCCATGAATC 1302
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1190 CAAAGGAAATAGAAGAAGATAAAGTTGAGATTGAAGCATTGAAGAGTGAATCCATGAATC 1249
Query 1303 TCAGAGAGGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTTTGGCGTGAGG 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TCAGAGAGGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTTTGGCGTGAGG 1309
Query 1363 AACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAACACTCGAGGAAAAGTATTCACAAA 1422
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1310 AACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAACACTTGAGGACAAGTATTCACAAA 1369
Query 1423 TGAACAAACTCGTAGGAGATATGGAAGCCTTCCTCAG-TTCAAGAAATACTACAGGTGTG 1481
|||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1370 TGAACAAACTTGTAGGAGATTTGGAAGCCTTCCTC-GATTCAAGAAATACTACAGGTGTG 1428
Query 1482 AAAGAGGTGAGAGTTGCGGAATTGTTAAGAGAAACTGCTGCATCAGTTGATAATATCCAA 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 AAAGAGGTGAGAGTTGCGGAATTGTTAAGAGAAACTGCTGCATCAGTTGATAATATCCAA 1488
Query 1542 GAAATCAAGGAATTTACGTATGAACCCGCAAAGCCGGACGATATCCTCATGTTGTTTGAA 1601
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1489 CAAATCAAGGAATTTACGTATGAACCTGCAAAGCCGGACGATGTCCTCATGTTGTTTGAA 1548
Query 1602 CAAATGAACATGGGTGAAAACCAGGATAGAGAAAGCGAGCAATATGTTGCCTACAGTCCG 1661
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1549 GAAATGAACTTGGGTGAAGCCCAGGATAGAGAAATCGAGCAATATGTTGCCTACAGTCCG 1608
Query 1662 GTCAGCCACGCTTCAAAAGCTCACACGGTAAGTCCAGATGTCAATTTGATTAACAAAGGG 1721
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1609 GTCAGCCACGCTTCAAAAGCTCATACGGTAAGTCCAGATGTCAATTTGATTAACAAAGGG 1668
Query 1722 AGACACTCGAATGCTTTCACTGATCAGAATGGTGAATTTGAAGAAGATGACAGTGGCTGG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 AGACACTCGAATGCTTTCACTGATCAGAATGGTGAATTTGAAGAAGATGACAGTGGCTGG 1728
Query 1782 GAAACTGTGAGCCATTCTGAAGAACACGGATCCAGTTACTCTCCAGATGAGAGCATCCCT 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 GAAACTGTGAGCCATTCTGAAGAACACGGATCCAGTTACTCTCCAGATGAGAGCATCCCT 1788
Query 1842 AATATTAGCAACACTCATCACCGTAACAGCAATGTATCGATGAATGGAACAGAGTATGAA 1901
||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||
Sbjct 1789 GGTATTAGCAACACTCATCACCGTAACAGCAATGTATCGATGACTGAAACAGAGTTTCAA 1848
Query 1902 AAGACTCTATTGAGAGAAATAAAAGAAGTGTGCTCGGTTCCAAGACGACAATCCAAAAAG 1961
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1849 AAGAATCTATTGAGAGAAATAAAAGAAGTGTGCTCGGTTCCAAGACGGCAATCCAAAAAG 1908
Query 1962 TTACCGTCAATGGCAAAGCTCTGGAGTTCATTAGAAGGTATGAATGGAAGGGTTTCAAAC 2021
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TTATCGTCAATGGCAAAGCTCTGGAGTTCATTAGAAGGTATGAATGGAAGGGTTTCAAAC 1968
Query 2022 GCGAGAAAATCAACCGTGGAGATGGTTTCACCAGAAACAGGCTCAAACAAAGGCGGATTC 2081
| |||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1969 GGGAGAAAATCAACTGTGGGGATGGTTTCACCAGAGACAGGCTCAAACAAAGGAGGATTC 2028
Query 2082 AACACATTGGACCTGGTTGGTCAATGGAGCTCATCACCAGACTCGGCTAATGCTAATTTA 2141
| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2029 AGCACGTTGGACTTGGTTGGGCAATGGAGCTCATCACCAGACTCGGCTAATGCTAATGTA 2088
Query 2142 AATCGAGGAGGGAGGAAAGGGTGCATAGAGTGGCCAAGAGGGGCACATAAGAACAGCTTG 2201
|||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2089 AATCGAGG-G--ATGAAAGGGTGCATAGAGTGGCCAAGAGGTGCACATAAGAACAGCTTG 2145
Query 2202 AAGACAAAGCTCATAGAAGCACAAATCGAGAGCCAAAAGGTTCAGCTGAAGCATGTCCTT 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 AAGACAAAGCTCATAGAAGCACAAATCGAGAGCCAAAAGGTTCAGCTGAAGCATGTCCTT 2205
Query 2262 GAGCATAAGATCTAGGCCACAACATATTCCAAAACTACCAGTCCTAGGCCATTCTACTAA 2321
|||||||||||||||||||||||| | |||||||||||| |||||||| || ||||
Sbjct 2206 GAGCATAAGATCTAGGCCACAACAAACTCCAAAACTACCTGTCCTAGGTCAA---ACTAG 2262
Query 2322 TCTTTGTGGCTGAGCAGCAGAACTGGATTTT 2352
||||| ||||||||||||||||| |||||||
Sbjct 2263 TCTTTATGGCTGAGCAGCAGAACCGGATTTT 2293
> Ahg923516 jgi|Araly1|923516|scaffold_104797.1
Length=2230
Score = 1122 bits (607), Expect = 0.0
Identities = 1271/1574 (81%), Gaps = 115/1574 (7%)
Strand=Plus/Plus
Query 345 CCGAGCTTCACTCGTCAACGAAGAT-C-TGGCGTGTCT-GTCAGG-AGGCTAAGCAGGCC 400
||||| || |||||||| ||||||| | | || | ||| || || || | |||| ||||
Sbjct 156 CCGAGTTTGACTCGTCAGCGAAGATCCGTTGC-T-TCTGGT--GGCAGACGAAGCCGGCC 211
Query 401 GGAGACTCCTCAATTGAAATCGAAGGTGGAGGATCAAAACATTGAGCGATGCGGCGGGGT 460
||||||||| | |||||||| |||||||||||||| || | ||| || |||||| ||
Sbjct 212 GGAGACTCCGCTATTGAAATGGAAGGTGGAGGATCGGAATAAAGAGAGAAGCGGCGTTGT 271
Query 461 TGAAGATGGTGATAACGAGGATGAT-GAT-T-G---TAAT-A--A-GATGCGTTGTCAG- 509
||||| | |||| ||||||||||| ||| | | |||| | | | |||| |||||
Sbjct 272 CGAAGACGATGATTACGAGGATGATGGATGTAGTAATAATAACCAGGTTGCGAGGTCAGA 331
Query 510 GA--A--CG--G--A-G-T---AGG--AGTGT-ACGGCCTGAT-ACTGTTAGGAAACTTG 552
|| | || | | | | ||| | | | |||||||| | ||||||||||||| |
Sbjct 332 GACTACTCGCCGCAAGGATCGGAGGAAAATCTCACGGCCTG-TCTCTGTTAGGAAACTCG 390
Query 553 CTGCCGGAG-TGTGGCGATTGCGAGTCCCGGATGCG-GTTTCTAGCGGCGGAGATAAG-- 608
| ||||| | | ||||| |||| ||| || || ||| | ||||||||||||||| |||
Sbjct 391 CCGCCGG-GCTATGGCGGTTGCAAGTTCCTGACGCGAG-TTCTAGCGGCGGAGA-AAGAA 447
Query 609 AGGAGCAAGGATCGGTTACGGTTTCAGGAAACTGCTGGTCCTGCTGGAAACTTGGGTCCT 668
||| |||| || ||||| ||||||||| | | | ||||||| || ||||| |
Sbjct 448 AGG-GCAAAGAGGGGTTAGGGTTTCAGG-----GAT-G---TGCTGGATACATGGGTGTT 497
Query 669 CTGT-TTTATTATCACCACCATGATGACAAACATTCTGGCTTTCAAAGCAACAA-TTCAA 726
| || | | |||||| || | | |||||||| ||||||| ||||||||| || | ||
Sbjct 498 CCGTATCT-TTATCATCA-TA-G-TGACAAACCTTCTGGCGGTCAAAGCAATAAGAT-AA 552
Query 727 -G-A-AA--CAAGCA-TA--G-T----------A--GATTCTTGTGTAAGCAT-GAGCCT 764
| | || | |||| || | | | ||||||||||||||| | ||||||
Sbjct 553 GGCAGAACCCTAGCACTATTGCTACGACAAAAAATGGATTCTTGTGTAAGC-TCGAGCCT 611
Query 765 TCAGTTCCATTTCCCCACTGC-GCGATGGAGGGAGCAACAAAATGGGATCCCATCTGCTT 823
||| | ||||||||||||| | || |||||||| ||||||||||||||||| |||||||
Sbjct 612 TCAATGCCATTTCCCCACT-CGGCCATGGAGGGGGCAACAAAATGGGATCCTGTCTGCTT 670
Query 824 GGATACAAGGGATGATGTACACCAAATCTATACCAACGTGAAGTGGAATAATCAACAAGT 883
|||||||| |||||| ||||||||||| |||| |||| ||||| | | | |||| |||||
Sbjct 671 GGATACAATGGATGAAGTACACCAAATATATAGCAACATGAAGCGTATTGATCAGCAAGT 730
Query 884 GAATGATGTTTCATTAGCTTCTTCTATTGAATTG-A-AACTTCAGGAAGCTCGTGCTTGC 941
||||| ||| ||||| | |||||| ||||| | | |||| ||||||| | |||| ||
Sbjct 731 GAATGCTGTGTCATTGGTTTCTTCCCTTGAA--GCAGAACTGGAGGAAGCACATGCTCGC 788
Query 942 ATT-AAGGATCTTGAGAGTGAGAAGCGATCTCAGAAAAAGAAGCTTGAGCAGTTCCTGAA 1000
||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| |||
Sbjct 789 ATTGAA-GATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAACTCGAGCAGTTTTTGAG 847
Query 1001 GAAAGTTAGCGAGGAGAGGGCAGCTTGGCGGAGCAGAGAGCATGAGAAGGTCCGAGCAAT 1060
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 848 GAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCACGAGAAGGTCCGAGCAAT 907
Query 1061 TATTGATGACATGAAAGCTGACATGAACCA-GGAAAAGAAGACTCGTCAGAGATTAGAAA 1119
|||||||| |||||| |||| ||||| || ||| ||||| || ||||||||||||||||
Sbjct 908 CATTGATGATATGAAAACTGATATGAA-CAGGGAGAAGAAAACCCGTCAGAGATTAGAAA 966
Query 1120 TCGTCAATTCA-AAATTAGTCAATGAGCTTGCAGATTCAAAGTTAGCAGTAAAGCGTTAC 1178
|||| || ||| ||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 967 TCGTGAA-TCATAAATTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGTTAC 1025
Query 1179 ATGCATGATTACCAACAGGAAAGGAAGGCAAGAGAATTGATCGAAGAAGTTTGTGATGAA 1238
||||| || ||| || |||||||||| |||||||||||||| || |||||||| || |||
Sbjct 1026 ATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGACGAA 1085
Query 1239 CTGGCAAAGGAAATAGAAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGCGAATCCATG 1298
|| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1086 CTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCCATG 1145
Query 1299 AATCTCAGAGAGGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTTTGGCGT 1358
| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1146 AGCCTCAGAGAAGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTCTGGCGT 1205
Query 1359 GAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAACACTCGAGGAAAAGTATTCA 1418
||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||
Sbjct 1206 GAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTTGAGGAAAGGTACTCA 1265
Query 1419 CAAATGAACAAACTCGTAGGAGATATGGAAGCCTTCCTCAGTTCAAGAAATACT---ACA 1475
||||||||||| || ||||||||| ||||| | ||||| || |||||| ||| | |||
Sbjct 1266 CAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCAAGAGATATTGTGACA 1325
Query 1476 GGTGTGAAAGAGGTGAGAGTTGCGGAATTGTTAAGAGAAACTGCTGCATCAGTTGATAAT 1535
| ||| |||||||| |||| || || || ||||||||||| || |||| ||| | | |
Sbjct 1326 GATGTCAAAGAGGTTAGAGAGGCTGAGTTATTAAGAGAAACCGCGGCATTGGTT-A-A-T 1382
Query 1536 ATCCAAGAAATCAAGGAATTTACGTATGAACCCGCAAAGCCGGACGATATCCT-CATGTT 1594
||||||||||||||||||||||| ||||| || |||| ||||| |||||| | | | |
Sbjct 1383 ATCCAAGAAATCAAGGAATTTACATATGAGCCTTCAAACCCGGATGATATC-TACGCGGT 1441
Query 1595 GTTTGAACAAATGAACATGGGTGAAAACCAGGATAGAGAAA-GCGAGCAATATGTTGCCT 1653
||||||| ||||||| || |||||| ||| |||||||||| | ||| ||| |||||| |
Sbjct 1442 GTTTGAAGAAATGAATATCGGTGAAGCCCATGATAGAGAAATG-GAGAAATCTGTTGCTT 1500
Query 1654 ACAGTCCGGTCAGCCACGCTTCAAAAGCTCACACGGTAAGTCCAGATGTCAATTTGATTA 1713
||||||| |||||| | ||| |||| |||||||||||||||||||| ||||||||| |
Sbjct 1501 ACAGTCCAACCAGCCATGGTTCTAAAGTTCACACGGTAAGTCCAGATGCCAATTTGATGA 1560
Query 1714 ACAA-A--GGGAGACACTC-GAATGCTTTCACTGATCAGAATGGTGA-ATTTGAAGAAGA 1768
|||| | ||||||||||| || |||||| ||| | |||||||| || || ||||||||
Sbjct 1561 ACAAGAAAGGGAGACACTCAGA-TGCTTTTACTCACCAGAATGGAGACATA-GAAGAAGA 1618
Query 1769 TGACAGTGGCTGGGAAACTGTGAGCCAT-TCTGAAGAACACGGATCCAGTTACTCTCCAG 1827
||| || || |||||||| |||||||| || |||||||| ||||| |||||||| ||||
Sbjct 1619 TGATAGCGGTTGGGAAACAGTGAGCCACCTC-GAAGAACAAGGATCGAGTTACTCACCAG 1677
Query 1828 ATGAGAGCATCCCT 1841
||| |||||| |||
Sbjct 1678 ATGGGAGCATTCCT 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100748698025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5