BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20360.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479560 jgi|Araly1|479560|fgenesh2_kg.3__2261__AT3G20360.1 773 0.0
Ahg479561 jgi|Araly1|479561|fgenesh2_kg.3__2262__AT3G20370.1 368 5e-101
Ahg912469 jgi|Araly1|912469|Al_scaffold_0001_2723 350 2e-95
> Ahg479560 jgi|Araly1|479560|fgenesh2_kg.3__2261__AT3G20360.1
Length=1242
Score = 773 bits (418), Expect = 0.0
Identities = 540/598 (90%), Gaps = 11/598 (2%)
Strand=Plus/Plus
Query 208 TATCGAGCACGGTGA-AGGGTCTGAGAGAACGTCCTCCATCGTC-T-TACTCTCTCAAGA 264
|||| | ||| |||| | ||||| ||||| ||||||||||||| | |||| ||||||||
Sbjct 175 TATC-ATCAC-GTGATA-GGTCTAAGAGATTGTCCTCCATCGTCTTATACTATCTCAAGA 231
Query 265 TGGAGTCTTTCAACACACTCATGAAGTCTGTTTACACTGAGAGATACGAATCTCGTCCTT 324
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 232 TGGAGTCTTTCAATACACTCATGAAGTCTGTTTACACCGAGAGATATGAATCTCGTCCTT 291
Query 325 TTAGGGTCGGTAGATACAACTGGACGCTTGTTGTGTATCCGAAGGGAAACAAGAACGATA 384
||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| ||||
Sbjct 292 TTAGGGTCGGTAGATACAATTGGACGCTTGTCGTATATCCTAAGGGGAACAAGAATGATA 351
Query 385 ACGGTACAGGGCACATTTCGCTATACGTCGTCTTAGACAACTCAACTCTCACCTCT-CAA 443
||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||| ||
Sbjct 352 ACGGTACAGGGTACATTTCGCTTTATGTCGTCTTAGACATCTCAACTCTAACCTCTCCAC 411
Query 444 AGTGAAGAGGTTCATGTAGATCTCAGATTTTACGTATTCAACAAGAAAGAGACGAAGTAC 503
| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 412 A-TGAAGAGGTTCATGTAGATCTCAGATTTTACGTCTTCAACAAGAAAGAGAAGAAGTAC 470
Query 504 TTTACGATCCAAGATACTGATGTATGGCGATTCAGTGCAATCAAAAGAATGTGGGGATTT 563
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 471 TTTACGATCCAAGATACTGATGTATGGCGATTCAGTGCAATCAAAACCATGTGGGGGTTT 530
Query 564 TCTAAGGTTCTTCCTCTGATTACGTTTAACAACCTAAAAAATGGATACCTTTATGACGTT 623
||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
Sbjct 531 TCTAAGGTTCTTCCTCTGACTACGTTTAACAACCTGAAAAATGGCTACCTTTATGATATC 590
Query 624 GACCATTGTGAGTTTGGCG---TTGACGTTATCATTCCACCATTCTACGAAAAATCGGAA 680
|||||||| |||||||||| ||||||| ||||||||| ||||||| || || ||||||
Sbjct 591 GACCATTGCGAGTTTGGCGGCGTTGACGTCATCATTCCAGCATTCTATGAGAAGTCGGAA 650
Query 681 GTTTTCTCTGTCACCAAGAGTTTTCCGAGCCCGAGATTCACCTGGTATATTCAAGGATAC 740
||||||||||||||||||||||||| | | ||||||||||||| |||||| |||| |
Sbjct 651 CTTTTCTCTGTCACCAAGAGTTTTCCAAACGAAAGATTCACCTGGTTTATTCAGGGATTC 710
Query 741 TCGACACTGCCTACTGATTACCTATCAGAGGAGTTCATCATCGGAGGAAAAAGCTGGA 798
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 711 TCGACACTGCCTACTGATTACCTATCAGAGGAGTTCATCATCGGAAGAAAAAGCTGGA 768
Score = 630 bits (341), Expect = 6e-180
Identities = 405/434 (93%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 889 CAAAACCTTATGACAAGGTTTACGTACGAGCCAAGCTTCGTGTTCCTAACCAATTCGGAT 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 817 CAAAACCTTATGACAAGGTTTACGTACGAGCCAAGCTTCGTGTTCCTAACCAATTCCCAT 876
Query 949 CCCAATCCAAT-CTCGTTTTGGAAAGGCCACTTGATAACTGGTTCAGTCCCCAAACAATC 1007
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CCCAATCCAACACT-GTTTTGGAAAGGCCACTTGATAACTGGTTCAGTCCCCAAACAATC 935
Query 1008 GGGTGGGGATACGCTGACTTCATGCCTCTTTCTGATCTGAGAAATTCATCAAAGGGTTTT 1067
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GGGTGGGGTTACGCTGACTTCATGCCTCTTTCTGATCTGAGAAATTCATCAAAGGGTTT- 994
Query 1068 C-TTGTGAATGATATGTTGGTTGTTCAAGTCGCTATGGAGGAAATTTCTTCTACAAATTA 1126
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 995 CGTTGTGAATGATATGTTGGTTGTTCAAGTCGCGATGGAGGAAATTTCTTCAACAAAGTA 1054
Query 1127 CCTTCCCAAATAGACTTGTTTAGAAGCTTAAACCGTG-G-CATCTATAATATATGTGTTA 1184
||||||||| ||||||||| |||||||| ||| |||| | || ||| | | |||||||||
Sbjct 1055 CCTTCCCAATTAGACTTGTATAGAAGCTCAAATCGTGTGGCAGCTA-A-TCTATGTGTTA 1112
Query 1185 TATAGTCTTATCTTTTGTGCTTTAACTTAATATCATGTTTCTTATGCTTTGTGTTTCAAG 1244
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1113 TATAGTCCTATCTTTTGTGCTTTAACTTAATATCATGTTTCTTATGGTTTGTGTTTCAAG 1172
Query 1245 TGTTCGTTCTTTCGAATGGAAAACCTTATTTCTTTCTCCCACTTGGTCTAAAATAAATGG 1304
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGTTCTTTC---C-AATGGAAAACCTTATTTCTTTCTCCCACTTGGTCTAAAATAAATGA 1228
Query 1305 ATATATCATTTAAA 1318
||||||||||||||
Sbjct 1229 ATATATCATTTAAA 1242
Score = 235 bits (127), Expect = 6e-61
Identities = 174/196 (89%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 1 AACAAGTCTCACAGTGACTCTCTAAACTTCATTCATAGATCTTTGAAATGATGAGCTATC 60
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1 AACAAGTCTCACACCGACTCTCTAAACTTCATTCATAGATCTTTGACATGATGAG-TA-- 57
Query 61 ACTACATAAACACCTTATGCATTGTAATTTCTCTCTTGTCTTGTCTCTTCATCACCTCTT 120
|||||||| ||||||||||||| || || ||||| | |||||||||||||| |||||||
Sbjct 58 ACTACATAGACACCTTATGCATGGT--TT-CTCTCCTCTCTTGTCTCTTCATTACCTCTT 114
Query 121 CTTTTGCAGGACCAGTTCCAAACCAGGAAAATGGATCTCAGAAAATTTTCCCCACTCAGA 180
|||||||||||| || ||||||||||| ||||| ||||||||| || |||||||||| |
Sbjct 115 GTTTTGCAGGACCGGTCCCAAACCAGGAGAATGGCTCTCAGAAACTTATCCCCACTCAAA 174
Query 181 TATCATCACGTGATAG 196
||||||||||||||||
Sbjct 175 TATCATCACGTGATAG 190
> Ahg479561 jgi|Araly1|479561|fgenesh2_kg.3__2262__AT3G20370.1
Length=1390
Score = 368 bits (199), Expect = 5e-101
Identities = 507/650 (78%), Gaps = 43/650 (7%)
Strand=Plus/Plus
Query 178 AGATATCATCACGTGA-TAGTAAGGTTTC-TCTATCGAGCACGGTGAAGGGTCTGAGAGA 235
|||| ||||||||||| || ||| || || | || | | | ||||| |||||||||||
Sbjct 297 AGATCTCATCACGTGATTA-TAAAGTCTCAGC-CTCAAACGCAGTGAAAGGTCTGAGAGA 354
Query 236 ACGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACACTCATGAAGTCTGT 295
||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 355 TCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACATACTCCTTAAGTCAAC 414
Query 296 TTACACTGAGAGATACGAATCTCGTCC-TTTT-AGGGTCGGTAGATACAACTGGACGCTT 353
|||||| |||| ||||| ||||||||| |||| || | ||| ||||||||||||| |||
Sbjct 415 TTACACGGAGAAATACGCATCTCGTCCCTTTTCAGT-T-GGTGGATACAACTGGACACTT 472
Query 354 GTTGTGTATCCG-AA-GGGAAACAAGAACGATAACGGTACAGGGCACATTTCGCTATACG 411
||||||| ||| || ||||| |||||| ||| ||| ||||| || |||| || ||||
Sbjct 473 GTTGTGT-TCCCCAATGGGAA-CAAGAAGGATGGTGGTTCAGGGTACCTTTCTCTTTACG 530
Query 412 TCGTCTTAGACAACTCAACTCTCACCTCT-CAAAGTGAAGAGGT-TCATGTAGATCTCAG 469
| | | |||||||||||||||| | || || || ||||| | | | | ||||| ||
Sbjct 531 TAGCCATAGACAACTCAACTCTTGTCGCTGCACAGC-AAGAGATCT-ACGCGGATCTAAG 588
Query 470 ATTTTACGTATTCAACAAGAAAGAGACGAAGTACTTTACGATCCAAGATACTGATGTATG 529
|||||| | || |||||||| |||| ||||||||| || ||||||||||| ||||||||
Sbjct 589 GTTTTACATCTTTAACAAGAACGAGAGGAAGTACTTCACTATCCAAGATACCGATGTATG 648
Query 530 GC-GATTCAGTG-CAATCAAAA-GAATGTGGGGATTTTCTAAGGTTCT-TCC-TCTGATT 584
| | || |||| | |||||| || |||||||||| ||| |||| || ||| | ||||
Sbjct 649 GAAGTTT-AGTGTCT-TCAAAACGA-TGTGGGGATTCTCTCAGGTCCTCTCCAT-TGAT- 703
Query 585 ACGTTTAACA-ACCTAAAAAATGGATACCTTTATGACGTTGACCATTGTGAGTTTGGCGT 643
|| || || | ||| || ||| ||||||||||| || | || ||||| |||||||| ||
Sbjct 704 ACATTCAA-AGACCCAATAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGT 762
Query 644 TGACGTTATCATTCCA-C-CATTCTACGAAAAATCGGAAGTTTTCTCTGTCACCA-AGAG 700
||| || | |||||| | | || || |||||||||||| ||||| ||||||| | |||
Sbjct 763 TGATGTAACCATTCCTTCTC-TT-TATGAAAAATCGGAACTTTTCACTGTCAC-AGAGAA 819
Query 701 TTTTCCGAGC-CCGAGATTCACCTGGTAT-ATTCAAGGATACTCGACACTGCCTACT-GA 757
||| || | ||||||||||| ||| | |||| |||| ||| || |||| || ||
Sbjct 820 TTT-CCAAAATCCGAGATTCACTTGG-ACCATTCGGGGATTCTCTACGCTGC-TAAAAGA 876
Query 758 ---TTACCTATCAGAGGAGTTCATCATCGGAGGAAAAAGCTGGAATTTAC 804
|||||||||||| | ||||| ||||||||||| ||| |||||| |||
Sbjct 877 CACTTACCTATCAGATGTGTTCACCATCGGAGGAAGAAGTTGGAATATAC 926
> Ahg912469 jgi|Araly1|912469|Al_scaffold_0001_2723
Length=1155
Score = 350 bits (189), Expect = 2e-95
Identities = 719/962 (75%), Gaps = 87/962 (9%)
Strand=Plus/Plus
Query 219 GTGAAGGGTCTGAGAGAACGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAAC 278
||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 GTGAAAGGTCTGAGAGATCATCCTCCATCCTCTTACTCTCTCAAGATGGAGTCTTTCAAC 294
Query 279 ACACTCATGAAGTCTGT-TTACACTGAGAGATACGAATCTCGTCCTTT-T-AGGGTCGGT 335
|| ||| | ||||| || ||| |||| |||||||||||||||||| | || | |||
Sbjct 295 ACGCTCCTTAAGTCAACCTT-CACAGAGAAATACGAATCTCGTCCTTTCTCAGT-T-GGT 351
Query 336 AGATACAACTGGACGCTTGTTGTGTATCCGAA-GGGAAACAAGAACGATAACGG-TACAG 393
||||||||||||| ||||||||||| || || ||||| |||||| || | || | |||
Sbjct 352 GGATACAACTGGACACTTGTTGTGTACCCCAACGGGAA-CAAGAAAGACAGTGGCT-CAG 409
Query 394 GGCACATTTCGCTATACGTCGTCTTAGACAACTCAACTCTCACCTCT-CAAAGTGAAGAG 452
|| || ||||||||||||| | | |||||||||| || ||| | || || | | |||||
Sbjct 410 GGTACCTTTCGCTATACGTAGCCATAGACAACTCGACCCTCGTCGCTGCACA-TCAAGAG 468
Query 453 GTTCATGTAGATCTCAGATTTTACGTATTCAACAAGAAAGAGACGAAGTACTTTACGATC 512
||| ||| ||||| || |||||| | ||||||||||| |||| ||||||||| || |||
Sbjct 469 GTTTATGCGGATCTAAGGTTTTACATCTTCAACAAGAACGAGAGGAAGTACTTCACCATC 528
Query 513 CAAGATACTGATGTATGGCGATTCAGTG-CAATCAAAA-GAATGTGGGGATTTTCTAAGG 570
|||||||| ||||||||| ||| | || | |||||| || |||||||||| ||| |||
Sbjct 529 CAAGATACCGATGTATGGAAATTTAATGTCT-TCAAAACGA-TGTGGGGATTCTCTCAGG 586
Query 571 TTCT-TCCTCT-GATTACGTTTAACA-ACCTAAAAAATGGATACCTTTATGACGTTGACC 627
| || || | | ||| || || || | ||| ||||| ||||||||||| || | || |
Sbjct 587 TCCTCTC-TATTGAT-ACATTCAA-AGACCCGAAAAACGGATACCTTTACGATGGAGATC 643
Query 628 ATTGTGAGTTTGGCGTTGACGTTATCATTCCACCAT-TCTACGAAAA-ATCGGAAGTTTT 685
|||| |||||||| |||||||| | |||||| | | |||| |||| ||| ||| ||||
Sbjct 644 ATTGCGAGTTTGGTGTTGACGTGACCATTCCTTC-TCTCTAT-AAAATATCTGAACTTTT 701
Query 686 CTCTGTCACCAAGAGTTTTCCG-AGCCCGAGATTCACCTGGTAT-ATTCAAGGATACTCG 743
| ||||||| ||| ||| || | |||||||||||||||| | |||| |||| |||
Sbjct 702 CACTGTCACTGAGAATTT-CCATAACCCGAGATTCACCTGG-AGCATTCGGGGATTCTCT 759
Query 744 ACACTGC-CTACTGATT---ACCTATCAGAGG-AGTTCATCA-TCGGAGGAA-AAAGCTG 796
| || | | | |||| |||||||||| | | || ||| |||| |||| ||| ||
Sbjct 760 ATGCTTCTCAAA-GATTCTTACCTATCAGATGTATTT--TCAATCGGCGGAAGAAAT-TG 815
Query 797 GAATTTACGAA-TCTTTAAAAATGGTTTTGGCGCTTTTGAAGGCAAAAAT-TTGTCGCT- 853
|||| ||| || | | | ||||||| || ||| | || || |||| |||||| |
Sbjct 816 GAATATAC-AAGTGTATCCAAATGGTGATGCCGCAGTAGAGGG-AAAAGCCTTGTCGATG 873
Query 854 TTATCTTAACCTTGG-GCCACAA-GAGCTACTAAAAGCAAAACCTTATGACAAGGTTTAC 911
|| ||||||||||| || | || ||| | || || ||| |||| ||| ||||
Sbjct 874 TT-TCTTAACCTTGATGC-A-AACGAG--A--AATT-CAGTCCCT-ATGAGAAGATTTAT 924
Query 912 GTACGAGCCAAGCTTCGTGTTC-CTAACCAATTCGGATCCCAATCCAATCTCGTTTTGGA 970
|| |||||||||||||| ||| | |||||| || || ||| |||| ||| | |
Sbjct 925 GTTCGAGCCAAGCTTCGAATTCTC-AACCAA--CG---CC-AATTCAATAACGTC--GAA 975
Query 971 AAGGCCACTTGATAACTGGT-TCA-G-TCCCCAA-A--CA--AT---CGGGT-GGGGATA 1018
||| | ||||||| |||| | | | ||| | | || || | ||| |||| ||
Sbjct 976 AAG-CAACTTGATGTTTGGTATAATGGTCCGGGATATTCAGGATTTTCTGGTTGGGGTTA 1034
Query 1019 CGCTGACTTCATGC-CTCTTTCTGATCTGAGAA-ATTCATCAAAGGGTTTTC-TTGTGAA 1075
|||||| || | | || || ||||| | || |||||||||||||||| | |||||||
Sbjct 1035 TAATGACTTTAT-CTCACTCTCAGATCTCA-AAGATTCATCAAAGGGTTT-CGTTGTGAA 1091
Query 1076 TGATATGTTGGTTGTTCAAGTCGCTATGGAGGAAATTTCTTCTACAAATTACCTTCCCAA 1135
|||| ||||| | | |||||||| ||||| | |||||||| || || ||| ||||| |
Sbjct 1092 TGATGTGTTGATGGCTCAAGTCGAAATGGAAGCCATTTCTTCAACCAAGTAC-TTCCCTA 1150
Query 1136 AT 1137
||
Sbjct 1151 AT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5