BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20362.1
Length=144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925530 jgi|Araly1|925530|scaffold_201091.1 174 1e-43
Ahg925482 jgi|Araly1|925482|scaffold_201043.1 174 1e-43
> Ahg925530 jgi|Araly1|925530|scaffold_201091.1
Length=214
Score = 174 bits (94), Expect = 1e-43
Identities = 96/97 (99%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 48 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 157
Query 108 AAGGAGGCAGCAGGGATTCGACTTCCCCTGGGGGTAG 144
||||||||||| |||||||||||||||||||||||||
Sbjct 158 AAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAG 194
> Ahg925482 jgi|Araly1|925482|scaffold_201043.1
Length=791
Score = 174 bits (94), Expect = 1e-43
Identities = 96/97 (99%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 48 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 657
Query 108 AAGGAGGCAGCAGGGATTCGACTTCCCCTGGGGGTAG 144
||||||||||| |||||||||||||||||||||||||
Sbjct 658 AAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAG 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 4620779581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5