BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20370.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479561 jgi|Araly1|479561|fgenesh2_kg.3__2262__AT3G20370.1 1808 0.0
Ahg912469 jgi|Araly1|912469|Al_scaffold_0001_2723 1088 0.0
Ahg933293 jgi|Araly1|933293|scaffold_401281.1 808 0.0
> Ahg479561 jgi|Araly1|479561|fgenesh2_kg.3__2262__AT3G20370.1
Length=1390
Score = 1808 bits (979), Expect = 0.0
Identities = 1273/1408 (90%), Gaps = 47/1408 (3%)
Strand=Plus/Plus
Query 4 GCATTATTAACTAAGCATGTATCTCCCACTAAGGCACAAATTACTAACCATAT-A-AGTC 61
|||||||||||||||||||||||||||||||| | |||||||||||| | |||
Sbjct 1 GCATTATTAACTAAGCATGTATCTCCCACTAA-G-------TACTAACCATATAAGAGTA 52
Query 62 TCAGTACTCTCTGTTCTGCAAACTTCATACACAAAACCAACATTAAGAGATGGCGAGCCA 121
|||||||||| |||||| | ||||||| | |||||||||| |||||||||| |||||||
Sbjct 53 ACAGTACTCTCAGTTCTGTACACTTCATTC-CAAAACCAACCTTAAGAGATGACGAGCCA 111
Query 122 CTACAGAAACACAAGCGCTATTGCTTATCTATTGCTTTGTCTCTTCATTACATCTGCCAC 181
|| ||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 112 CTCCAGAAACACAAGCTCTATTGCTTATCTCTTGCTTTGTTTCTTCATTACCTCTGCGAC 171
Query 182 TGCACATTCCTTCATACGACAAATCACTGAT---GACCTCAAAACAAATCTGCAG----C 234
|||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
Sbjct 172 TGCACATTCCTTCATACGACAATTCACTGATGGGGACCTCAACACAAATCTGCAGCAAAC 231
Query 235 --AGGAGGTAGGAGCAGAACCAATCCAAAACCTGGACGTAGGACATTACTTACAAGAAAA 292
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 232 AGAGGAGGTAGGCGCAGAACCAATCCGAAACCTGGACGTAGGACATTACTTACAAGAAAA 291
Query 293 TAAGGAGATCTCATCACGTGATTATAAAGTATCAGCTTCAAACGCAGTGAAAGGTTTGAG 352
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 292 TAAGGAGATCTCATCACGTGATTATAAAGTCTCAGCCTCAAACGCAGTGAAAGGTCTGAG 351
Query 353 AGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTC 412
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 AGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACATACTCCTTAAGTC 411
Query 413 AACTTACACGGAGAAATATGTATCTCGTCCCTTTTCAGTTGGTGGATACAACTGGACACT 472
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 412 AACTTACACGGAGAAATACGCATCTCGTCCCTTTTCAGTTGGTGGATACAACTGGACACT 471
Query 473 TGTTGTGTTCCCAAATGGTAACAAGAAGGATAGTGGTTCAGGGTACCTTTCTCTTTACGT 532
|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 472 TGTTGTGTTCCCCAATGGGAACAAGAAGGATGGTGGTTCAGGGTACCTTTCTCTTTACGT 531
Query 533 AGCCATAGACAACTCAACTCT---CG--G-ACAGCAAGAGATTTACGCAGATCTAAGGTT 586
||||||||||||||||||||| || | |||||||||||| ||||| |||||||||||
Sbjct 532 AGCCATAGACAACTCAACTCTTGTCGCTGCACAGCAAGAGATCTACGCGGATCTAAGGTT 591
Query 587 TTACATCTTTAACAAGAATGAGAGGAAGTACTTCACTATCCAAGATACCGATGTGTGGAA 646
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 592 TTACATCTTTAACAAGAACGAGAGGAAGTACTTCACTATCCAAGATACCGATGTATGGAA 651
Query 647 GTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCCCCATTGATACATTCAA 706
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 652 GTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCTCCATTGATACATTCAA 711
Query 707 AGATCCGACAAAAGGATATCTCTACGATGGAGATCACTGCGAGTTTGGTGTTGATGTAAC 766
||| || | ||| ||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 712 AGACCCAATAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGTTGATGTAAC 771
Query 767 CATGCCTTCTCTCTACGAAAAATCGGAACTTTTCTCTGTCACAGAGAATTTTCTAAATCC 826
||| |||||||| || |||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 772 CATTCCTTCTCTTTATGAAAAATCGGAACTTTTCACTGTCACAGAGAATTTCCAAAATCC 831
Query 827 GAGATTCACCTGGACCATTCGGGGATTCTCTACGCTGCTAAAAAACAGTTACCTATCAGA 886
||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 832 GAGATTCACTTGGACCATTCGGGGATTCTCTACGCTGCTAAAAGACACTTACCTATCAGA 891
Query 887 AGTGTTCTCCATCGGAGGAAGAAGTTGGAATATACAAATCAATCCAAGTGGTCTTGGTAC 946
|||||| ||||||||||||||||||||||||||||| | ||||||||||||| || ||
Sbjct 892 TGTGTTCACCATCGGAGGAAGAAGTTGGAATATACAAGTTAATCCAAGTGGTCGTGCCAC 951
Query 947 GGGAGAGGGAAAAGCTTTGTCGATGTATCTTGGCCTTAATGTGAATGAGATATTCAGACC 1006
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 952 CGGAGAGGGAAAAGCCTTGTCGATGTATCTTAACCTTAATGTGAATGAGATATTTAGACC 1011
Query 1007 ATATGAGAAGATTTATGTTCGAGCCAAGCTTCGAGCTCTTAACCAACTCAATCTCAGTAA 1066
||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct 1012 ATATGAGAAGATTTATGTTCGAGCCAAATTTCGAGTTCTTAACCAACGCAATCTCAATAA 1071
Query 1067 CATCGAAAGGGAACTCGATATTTGGTACAATGGTCCGGGATATGGAG-A-A-TATAGCTG 1123
| |||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1072 CGTCGAAAGGCCACTCGATATTTGGTACAATGGTCCGGGATATGGAGCAGAATATAGCTG 1131
Query 1124 GGGTTTCCCTGAGTTTATCTATTTCCCTTATCTCACAGAT-TCATCAAAGGGTTTCGTTA 1182
||||| |||||||||||||| | || || |||||| |||| | ||||||||||||||||
Sbjct 1132 GGGTTACCCTGAGTTTATCTCTCTCTCTGATCTCAGAGATGT-ATCAAAGGGTTTCGTTG 1190
Query 1183 AGAACGATGTGTTGATGGTTCAAGTTGAAATGGAGGCCATTTCTTCAACCAAGTACTTCC 1242
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1191 TGAACGATATGTTGATGGTTCAAGTTGAAATGGAAGCCATTTCTTCAACCAAGTACTTTC 1250
Query 1243 CGAGTTAGATTTTCTC-TAAGC-AAAGAACTTGTACCTACCTCCATGTGTTTGATTTGTT 1300
| ||||||||||| || || || ||| |||||| | ||||||||||||||||||||||
Sbjct 1251 CTAGTTAGATTTT-TCCTA-GCCAAATAACTTG--C--ACCTCCATGTGTTTGATTTGTT 1304
Query 1301 ATCAAATAC-TA--A-TAAGAATTTGATTATGCATTT-CAAATACAATT-GTTTCTTTTT 1354
||||||||| || | |||||||||| || || |||| ||||| |||| ||||||||||
Sbjct 1305 ATCAAATACCTACTAATAAGAATTTGCTTTTG-ATTTTCAAAT-CAATAAGTTTCTTTTT 1362
Query 1355 CTTCAGCATATCATTATCAAATTATCAT 1382
|||| ||||| || ||||||||||||||
Sbjct 1363 CTTCCGCATAGCAATATCAAATTATCAT 1390
> Ahg912469 jgi|Araly1|912469|Al_scaffold_0001_2723
Length=1155
Score = 1088 bits (589), Expect = 0.0
Identities = 969/1149 (84%), Gaps = 39/1149 (3%)
Strand=Plus/Plus
Query 126 AGAAACACAAGCGCTATTGCTTATCTATTGCTTTGTCTC-TTCATTACATCTGCCACTGC 184
|||||||| ||| || ||| |||||| ||| |||||||| || | ||||||| ||||
Sbjct 22 AGAAACACCAGCCCTGTTGTTTATCTCTTGTTTTGTCTCATT-GTCGCATCTGCGTCTGC 80
Query 185 ACA-TTCCTTCATACGACAAATCACTGATGACCTCAAAACAAATCTGCAGC-AGGAGGTA 242
| | ||||||||| ||||| ||||||||| | |||| ||||||||||||| || | |
Sbjct 81 A-AGCTCCTTCATAAGACAATTCACTGATGGCTTCAATACAAATCTGCAGCAAGAAAAT- 138
Query 243 GGAGCAGAACCAAT-CCAAAACCTGGACGTA-GGACATTACTTACAAGAA-AAT-AAGGA 298
|||| || |||||| || ||||| |||| | ||| | || |||| | || ||| || ||
Sbjct 139 GGAGTAGGACCAATGCC-AAACCAGGACAAAGGGA-ACTATTTAC-ATAACAATGAA-GA 194
Query 299 GATCTCATCACGTGATTATAAAGTATCAGCTTCAAACGCAGTGAAAGGTTTGAGAGATCG 358
|||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||
Sbjct 195 GATCTCATCACGTGATTATAAAGTCTCAGCTTCAAATGTAGTGAAAGGTCTGAGAGATCA 254
Query 359 TCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTCAAC-TT 417
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 255 TCCTCCATCCTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTCAACCTT 314
Query 418 ACACGGAGAAATATGTATCTCGTCCCTTT-TCAGTTGGTGGATACAACTGGACACTTGTT 476
||| |||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 315 -CACAGAGAAATACGAATCTCGTCC-TTTCTCAGTTGGTGGATACAACTGGACACTTGTT 372
Query 477 GTGTTCCCAAATGGTAACAAGAAGGATAGTGGTTCAGGGTACCTTTCTCTTTACGTAGCC 536
|||| ||| || || |||||||| || ||||| |||||||||||||| || |||||||||
Sbjct 373 GTGTACCCCAACGGGAACAAGAAAGACAGTGGCTCAGGGTACCTTTCGCTATACGTAGCC 432
Query 537 ATAGACAACTCAAC--TC-TCG--G-ACAGCAAGAGATTTACGCAGATCTAAGGTTTTAC 590
||||||||||| || || ||| | ||| |||||| |||| || |||||||||||||||
Sbjct 433 ATAGACAACTCGACCCTCGTCGCTGCACATCAAGAGGTTTATGCGGATCTAAGGTTTTAC 492
Query 591 ATCTTTAACAAGAATGAGAGGAAGTACTTCACTATCCAAGATACCGATGTGTGGAAGTTT 650
||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 493 ATCTTCAACAAGAACGAGAGGAAGTACTTCACCATCCAAGATACCGATGTATGGAAATTT 552
Query 651 AGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCCCCATTGATACATTCAAAGAT 710
| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 553 AATGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCTCTATTGATACATTCAAAGAC 612
Query 711 CCGACAAAA-GGATATCTCTACGATGGAGATCACTGCGAGTTTGGTGTTGATGTAACCAT 769
|||| |||| ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct 613 CCGA-AAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGTTGACGTGACCAT 671
Query 770 GCCTTCTCTCTACGAAAA-ATCGGAACTTTTCTCTGTCACAGAGAATTTTC-TAAATCCG 827
||||||||||| |||| ||| ||||||||| ||||||| |||||||| | ||| |||
Sbjct 672 TCCTTCTCTCTAT-AAAATATCTGAACTTTTCACTGTCACTGAGAATTTCCATAAC-CCG 729
Query 828 AGATTCACCTGGACCATTCGGGGATTCTCTACGCTGCTAAAAAACAGTTACCTATCAGAA 887
||||||||||||| ||||||||||||||||| ||| || ||| | ||||||||||||
Sbjct 730 AGATTCACCTGGAGCATTCGGGGATTCTCTATGCTTCTCAAAGATTCTTACCTATCAGAT 789
Query 888 GTGTTCTCCATCGGAGGAAGAAGTTGGAATATACAAATCAATCCAAGTGGTCTTGGTACG 947
|| || || ||||| ||||||| ||||||||||||| | |||||| |||| || |
Sbjct 790 GTATTTTCAATCGGCGGAAGAAATTGGAATATACAAGTGTATCCAAATGGTGATGCCGCA 849
Query 948 GGAGAGGGAAAAGCTTTGTCGATGTATCTTGGCCTTAATGTGAATGAGATATTCAGACCA 1007
| |||||||||||| |||||||||| |||| |||| ||| || |||| |||||| ||
Sbjct 850 GTAGAGGGAAAAGCCTTGTCGATGTTTCTTAACCTTGATGCAAACGAGAAATTCAGTCCC 909
Query 1008 TATGAGAAGATTTATGTTCGAGCCAAGCTTCGAGCTCTTAACCAACTC-AATCTCAGTAA 1066
||||||||||||||||||||||||||||||||| ||| ||||||| | ||| ||| |||
Sbjct 910 TATGAGAAGATTTATGTTCGAGCCAAGCTTCGAATTCTCAACCAACGCCAAT-TCAATAA 968
Query 1067 CATCGAAAGGGAACTCGATATTTGGTACAATGGTCCGGGATATGGAGAATATA--GCT-G 1123
| |||||| | |||| ||| ||||||| ||||||||||||||| || || | | | |
Sbjct 969 CGTCGAAAAGCAACTTGATGTTTGGTATAATGGTCCGGGATATTCAGGATTTTCTGGTTG 1028
Query 1124 GGGTT-TCCCTGAGTTTATCT-ATTTCCCTTATCTCACAGATTCATCAAAGGGTTTCGTT 1181
||||| | ||| ||||||| | | | | |||||| ||||||||||||||||||||||
Sbjct 1029 GGGTTATAA-TGACTTTATCTCACT-CTCAGATCTCAAAGATTCATCAAAGGGTTTCGTT 1086
Query 1182 AAGAACGATGTGTTGATGGTTCAAGTTGAAATGGAGGCCATTTCTTCAACCAAGTACTTC 1241
||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1087 GTGAATGATGTGTTGATGGCTCAAGTCGAAATGGAAGCCATTTCTTCAACCAAGTACTTC 1146
Query 1242 CCGAGTTAG 1250
|| | ||||
Sbjct 1147 CCTAATTAG 1155
> Ahg933293 jgi|Araly1|933293|scaffold_401281.1
Length=1110
Score = 808 bits (437), Expect = 0.0
Identities = 666/775 (86%), Gaps = 22/775 (3%)
Strand=Plus/Plus
Query 508 GTTCAGGGTACCTTTCTCTTTACGTAGCCATAGACAACTCAA--CTC-TCG--G-ACAGC 561
||||||| |||||||| ||||| ||||| ||||| || |||| | | ||| | |||
Sbjct 337 GTTCAGGATACCTTTCGCTTTATGTAGCTATAGATAAATCAACCCCCATCGCTGCACAAA 396
Query 562 AAGAGATTTACGCAGATCTAAGGTTTTACATCTTTAACAAGAATGAGAGGAAGTACTTCA 621
||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 397 AAGAGATTTACGCGGATCTAAGGTTTTATATCTTCAACAAGAACGAGAGGAAGTACTTGA 456
Query 622 CTATCCAAGATACCGATGTGTGGAAGTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTC 681
| || |||||||||||| | ||||| |||| ||||||||| |||||||||||||||||||
Sbjct 457 CCATACAAGATACCGATATATGGAAATTTAATGTCTTCAAGACGATGTGGGGATTCTCTC 516
Query 682 AGGTCCTCCCCATTGATACATTCAAAGATCCGACAAAAGGATATC-TCTACGATGGAGAT 740
| ||||| ||||||||||||||||| | |||||||| ||||| | | ||||||||||||
Sbjct 517 AAGTCCTGACCATTGATACATTCAAAAACCCGACAAACGGATA-CTTATACGATGGAGAT 575
Query 741 CACTGCGAGTTTGGTGTTGATGTAACCATGCCTTCTCTCTACGAAAAATCGGAACTTTTC 800
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct 576 CACTGCGAGTTTGGTGTTGATGTGACCATTCCTCCTCTCTACGAAAAATCGGAATTTTTC 635
Query 801 TCTGTCACAGAGAATTTTC-TAAATCCGAGATTCACCTGGACCATTCGGGGATTCTCTAC 859
||||||||||||||||| | ||| |||||||||||||||||||||| | |||||||||
Sbjct 636 TCTGTCACAGAGAATTTCCATAAC-CCGAGATTCACCTGGACCATTCAGAGATTCTCTAT 694
Query 860 GCTGCTAAAAAACAGTTACCTATCAGA-AGTGTTCTCCATCGGAGGAAGAAGTTGGAATA 918
|||||| ||| ||| |||||||||||| | |||||| |||| ||| ||||| ||||||||
Sbjct 695 GCTGCTGAAAGACATTTACCTATCAGATA-TGTTCTACATCAGAGTAAGAAATTGGAATA 753
Query 919 TACAAATCAATCCAAGTGGTCTTGGTACGGGAGAGGGAAAAGCTTTGTCGATGTATCTTG 978
||||| | ||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 754 TACAAGTGAATCCAAATGGTCGTGCCACGGGAGAGGGAAAAGCCTTGTCGATGTATCTTA 813
Query 979 GCCTTAATGTGAATGAGATATTCAGACCATATGAGAAGATTTATGTTCGAGCCAAGCTTC 1038
|||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 814 ATCTTAATGTGAATGAGAAATTCAAACCCTATGAGAAGATTTACGTTCGAGCCAAGCTTC 873
Query 1039 GAGCTCTTAACCAACTCAATCTCAGTAACATCGAAAGGGAACTCGATATTTGGTACAATG 1098
||| ||||||||||| |||||||| |||| | || ||| |||||||| ||||| || ||
Sbjct 874 GAGTTCTTAACCAACGCAATCTCAATAACTTGGAGAGGCCACTCGATAATTGGTTCATTG 933
Query 1099 GTCCGGGATATGGA---GAATATAGCT-GGGGTT-TCCCTGAGTTTATCTATTTCCCTTA 1153
|||||| ||||||| ||| || ||| |||||| || ||||||||||| |||| | |
Sbjct 934 GTCCGGAATATGGAAATGAACAT-GCTTGGGGTTATCA-TGAGTTTATCTCTTTCTCAGA 991
Query 1154 TCTCACAGATTCATCAAAGGGTTTCGTTAAGAACGATGTGTTGATGGTTCAAGTTGAAAT 1213
|| | |||||||||||||||||||||| |||||||||||| | ||||||||| |||||
Sbjct 992 CCTTAGAGATTCATCAAAGGGTTTCGTTGTGAACGATGTGTTAAAGGTTCAAGTCGAAAT 1051
Query 1214 GGAGGCCATTTCTTCAACCAAGTACTTCCCG-AGTTAGATTTTCTCTAAGCAAAG 1267
|||||||||||||||||||||||||| ||| |||||||||| ||| |||| |||
Sbjct 1052 GGAGGCCATTTCTTCAACCAAGTACTCCCCCTAGTTAGATTT-CTC-AAGCCAAG 1104
Score = 209 bits (113), Expect = 4e-53
Identities = 166/190 (87%), Gaps = 9/190 (5%)
Strand=Plus/Plus
Query 277 ATTACTTACAAGAAAATAAGGAGATCTCATCACGTGATTATAAAGT-ATCAGCTTCAAAC 335
||||||||| | |||| || |||| ||||||||||||||||||||| | |||||||||||
Sbjct 148 ATTACTTAC-ACAAAA-AA-GAGAACTCATCACGTGATTATAAAGTCA-CAGCTTCAAAC 203
Query 336 GCAGTGAAAGGTTTGAGAGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTC 395
| |||||| ||| ||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 204 GTAGTGAAGGGTCTGAGAGATCGTCCTCCATCTTCTTACTCTATGAAGATGGAGTCTTTC 263
Query 396 AACACGCTCCTTAAGTCAACTTACACGGAGAA--ATATGTATCTCGTCCCTTTTCAGTTG 453
|||||||||||||||||| || | ||| | || ||| | ||||||||| ||||| ||||
Sbjct 264 AACACGCTCCTTAAGTCAGCT-A-ACGCACAAGGATACGAATCTCGTCCTTTTTCCGTTG 321
Query 454 GTGGATACAA 463
||||||||||
Sbjct 322 GTGGATACAA 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5