BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20390.1

Length=971
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929965 jgi|Araly1|929965|scaffold_302422.1                       1011    0.0  


> Ahg929965 jgi|Araly1|929965|scaffold_302422.1
Length=604

 Score = 1011 bits (547),  Expect = 0.0
 Identities = 586/604 (97%), Gaps = 5/604 (1%)
 Strand=Plus/Plus

Query  111  CGGCGCCGGAGAGAGTGAGATGACTTGGTCGGTTTTCAGATCCATAAA-TACTCCAACAC  169
            |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct  2    CGGCGCCGGAGAGAGTGAGATGACTTGGTCGGTTTTCAGATCCATAAACT-CTCCAACGC  60

Query  170  TCGACCTCTCCACCGCACTTCGCTCCACTCGTACCCCATTGGTCGCTGCTGGTGTCGGCT  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCGACCTCTCCACCGCACTTCGCTCCACTCGTACCCCATTGGTCGCTGCTGGTGTCGGCT  120

Query  230  GCGCAACATTCGCTGGTGTttctctcttcagaatgtcttctagatctcctcctttcgctt  289
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCGCAACATTTGCTGGTGTTTCTCTCTTCAGAATGTCTTCTAGATCTCCTCCTTTCGCTT  180

Query  290  ccctctctgtctctgcttcttctGTGAAGAAGGAAGTTGTGTCTACTGAGAAAGCACCAG  349
            |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  CCCTCAGTGTCTCTGCTTCTTCTGTGAAGAAGGAAGTTGTGGCTACTGAGAAAGCACCAG  240

Query  350  CTGCTTTGGGACCTTACTCTCAGGCCATTAAAGCCAATAATCTGGTTTTTCTTTCAGGTG  409
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  241  CTGCTTTGGGACCTTACTCTCAGGCCATTAAAGCCAATAATCTTGTTTTTCTTTCAGGTG  300

Query  410  TTCTTGGACTTATACCTGAGACTGGAAAGTTTGTTTCGGAGAGCGTCGAAGATCAGACTG  469
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  301  TTCTTGGACTTATACCTGAGACTGGAAAGTTTGTTTCCGAGAGCGTCGAAGATCAGACTG  360

Query  470  AGCAGGTACTCAAAAACATGGGGGAGATATTGAAAGCTAGTGGTGCTGATTATTCCTCGG  529
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGCAGGTACTAAAAAACATGGGGGAGATATTGAAAGCTAGTGGTGCTGATTATTCCTCGG  420

Query  530  TGGTGAAGACAACAATCATGTTGGCTGATTTGGCTGACTTCAAGACAGTGAACGAGATAT  589
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct  421  TGGTGAAGACAACAATCATGTTGGCTGATTTGGCTGACTTCAAGAAAGTGAACGACATAT  480

Query  590  ATGCCAAATACTTCCCAGCTCCTTCTCCAGCACGATCGACGTATCAAGTTGCAGCTTTGC  649
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  481  ACGCCAAATACTTCCCAGCTCCTTCTCCAGCACGATCTACGTATCAAGTTGCAGCTTTGC  540

Query  650  CTCTAAACGCCAAGATCGAGATTGAATGTATTGCAACACTCTAGAACACTCAAATCAATC  709
            ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||
Sbjct  541  CTCTAAACGCCAAGATCGAGATTGAATGTATTGCAACACTCTAGACCAC-CA--TCAATC  597

Query  710  TCTA  713
            ||||
Sbjct  598  TCTA  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36064279482


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5