BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20395.1

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905044 jgi|Araly1|905044|Al_scaffold_0003_2172                    965    0.0  


> Ahg905044 jgi|Araly1|905044|Al_scaffold_0003_2172
Length=654

 Score =  965 bits (522),  Expect = 0.0
 Identities = 610/653 (93%), Gaps = 4/653 (1%)
 Strand=Plus/Plus

Query  79   ATGGGCATTTCTAAGATGATTCTTCTGAAATTCACATATGTTGTTTCTTTC-TGGATTAC  137
            ||||||||| |||||||||||||||||||| ||||||| | |||||| ||| ||||||||
Sbjct  1    ATGGGCATTGCTAAGATGATTCTTCTGAAACTCACATACGCTGTTTC-TTCTTGGATTAC  59

Query  138  TTGCGTGATCTTCAAAATGTCAAGAACGATAAAACGAGCTTTGTTGGGCTCATTCATCTT  197
            | ||| | || ||| |||||||||||||||||| |||||| ||||||| ||||||||| |
Sbjct  60   TGGCGCGGTCGTCATAATGTCAAGAACGATAAAGCGAGCTCTGTTGGGTTCATTCATCCT  119

Query  198  CATTCTTGCTTCCGCTAGTGTTGTGGTAGCCGCCATTGTAGGAGCCATCGAAGGTCACAC  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CATTCTTGCTTCCGCTAGTGTTGTGGTAGCCGCCATTGTAGGAGCCATCGAAGGTCACAC  179

Query  258  CACTGACATCGGATTTCTTCAAGGTAGTGTGCTTGGAGTGGTGGCTGGAGTTATCACTGC  317
            |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||
Sbjct  180  CACTGACATCGGATTTCTTCAAGGTAGTTTGCTCGGAGTCGTGGCTGGAGTTATCACCGC  239

Query  318  GGTCCAACTCTTTGGACCGGTGCTACATAGTGATCAACCTTTGTCTAAGGTGGCTTTACT  377
            ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  240  GGTCCAACTCTTTGGGCCGGTGCTACATGGTGATCAACCTTTGTCTAAGGTGGCTATACT  299

Query  378  CAGGAGAGTAGTGAATGGGAAAGCCATTATGGGATTGGTTAGACCTTTTGTTCTCAAAGC  437
            ||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct  300  CAGGAGAGTAGTGAATGGGAAAGCCATCATGGGATTGGTTAGACCGTTTGCTCTCAAAGC  359

Query  438  ATATCAATGGCAAATAATAGCATTGGATACAAGTTACATGGAGAGTTCAAACTTATACGA  497
            ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct  360  ATATCAATGGCAAATAATAACATTGGATACAAATTACATGGAGAGTTCAAACATATACGA  419

Query  498  TTTCAATCATGaaaaaaaGGGACTATCGAAGAGCTCTATTCAGAACATCCCGATGTTCTA  557
            |||||| || || ||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct  420  TTTCAAGCAAGAGAAAAAGGGATTATCGAAGAGCTCTATTGAAAACATCCCGATGTTCTA  479

Query  558  CAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAGGATTGGGAAGA  617
            |||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  480  CAACCGTTCAGATCAGCAAACAAAATCAAGTTGTTCGATTTGCTTACAGGATTGGGAAGA  539

Query  618  AGGGGAAGTAGGAAGAAAGCTAGCA-AGATGTGGCCACACATTTCATATGAATTGCATAG  676
            ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct  540  AGGGGAAGTAGGAAGAAAGCTAG-AGAGATGTGGCCACATATTTCATATGAATTGCATAG  598

Query  677  ATGAGTGGTTGCTTAGACAAGAAACTTGCCCCATTTGTAGAGACCATCTTTCA  729
            ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct  599  ATGAGTGGTTGTTTAGGCAAGAAACTTGCCCCATTTGTAGAGACCATCTTTCA  651



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30383964849


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5