BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20395.1 Length=822 Score E Sequences producing significant alignments: (Bits) Value Ahg905044 jgi|Araly1|905044|Al_scaffold_0003_2172 965 0.0 > Ahg905044 jgi|Araly1|905044|Al_scaffold_0003_2172 Length=654 Score = 965 bits (522), Expect = 0.0 Identities = 610/653 (93%), Gaps = 4/653 (1%) Strand=Plus/Plus Query 79 ATGGGCATTTCTAAGATGATTCTTCTGAAATTCACATATGTTGTTTCTTTC-TGGATTAC 137 ||||||||| |||||||||||||||||||| ||||||| | |||||| ||| |||||||| Sbjct 1 ATGGGCATTGCTAAGATGATTCTTCTGAAACTCACATACGCTGTTTC-TTCTTGGATTAC 59 Query 138 TTGCGTGATCTTCAAAATGTCAAGAACGATAAAACGAGCTTTGTTGGGCTCATTCATCTT 197 | ||| | || ||| |||||||||||||||||| |||||| ||||||| ||||||||| | Sbjct 60 TGGCGCGGTCGTCATAATGTCAAGAACGATAAAGCGAGCTCTGTTGGGTTCATTCATCCT 119 Query 198 CATTCTTGCTTCCGCTAGTGTTGTGGTAGCCGCCATTGTAGGAGCCATCGAAGGTCACAC 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CATTCTTGCTTCCGCTAGTGTTGTGGTAGCCGCCATTGTAGGAGCCATCGAAGGTCACAC 179 Query 258 CACTGACATCGGATTTCTTCAAGGTAGTGTGCTTGGAGTGGTGGCTGGAGTTATCACTGC 317 |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| || Sbjct 180 CACTGACATCGGATTTCTTCAAGGTAGTTTGCTCGGAGTCGTGGCTGGAGTTATCACCGC 239 Query 318 GGTCCAACTCTTTGGACCGGTGCTACATAGTGATCAACCTTTGTCTAAGGTGGCTTTACT 377 ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| Sbjct 240 GGTCCAACTCTTTGGGCCGGTGCTACATGGTGATCAACCTTTGTCTAAGGTGGCTATACT 299 Query 378 CAGGAGAGTAGTGAATGGGAAAGCCATTATGGGATTGGTTAGACCTTTTGTTCTCAAAGC 437 ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| Sbjct 300 CAGGAGAGTAGTGAATGGGAAAGCCATCATGGGATTGGTTAGACCGTTTGCTCTCAAAGC 359 Query 438 ATATCAATGGCAAATAATAGCATTGGATACAAGTTACATGGAGAGTTCAAACTTATACGA 497 ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| Sbjct 360 ATATCAATGGCAAATAATAACATTGGATACAAATTACATGGAGAGTTCAAACATATACGA 419 Query 498 TTTCAATCATGaaaaaaaGGGACTATCGAAGAGCTCTATTCAGAACATCCCGATGTTCTA 557 |||||| || || ||||||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 420 TTTCAAGCAAGAGAAAAAGGGATTATCGAAGAGCTCTATTGAAAACATCCCGATGTTCTA 479 Query 558 CAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAGGATTGGGAAGA 617 |||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 480 CAACCGTTCAGATCAGCAAACAAAATCAAGTTGTTCGATTTGCTTACAGGATTGGGAAGA 539 Query 618 AGGGGAAGTAGGAAGAAAGCTAGCA-AGATGTGGCCACACATTTCATATGAATTGCATAG 676 ||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 540 AGGGGAAGTAGGAAGAAAGCTAG-AGAGATGTGGCCACATATTTCATATGAATTGCATAG 598 Query 677 ATGAGTGGTTGCTTAGACAAGAAACTTGCCCCATTTGTAGAGACCATCTTTCA 729 ||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 599 ATGAGTGGTTGTTTAGGCAAGAAACTTGCCCCATTTGTAGAGACCATCTTTCA 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30383964849 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5