BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20400.1 Length=312 Score E Sequences producing significant alignments: (Bits) Value Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1 383 4e-106 Ahg930371 jgi|Araly1|930371|scaffold_302828.1 311 2e-84 Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 219 1e-56 > Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1 Length=318 Score = 383 bits (207), Expect = 4e-106 Identities = 285/321 (89%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60 Query 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119 ||||||||||||||||||| | ||||| ||||| | |||||||||||||||| ||| Sbjct 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 119 Query 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAG-CAAAG 178 | ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| Sbjct 120 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGGTTTTTAAT-AAAGGCAAAG 178 Query 179 ACAGGAAGC--A--C--AACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAG 232 ||| || | | | ||| ||||||||||||| ||| |||||||||| || ||||||| Sbjct 179 ACATGATGGGGATGCGTAACGCAGCTTTCATCATCGGAGAGGATGGATCTTTTAAAGAAG 238 Query 233 TGGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCA 291 ||||| |||||||| | |||||||||| ||||| |||||||||||| ||||||||||||| Sbjct 239 TGGATTTTGGAGAA-TCTCGAAACAGAAATCTCGAACCACTTGTGTGCTCTTATGTTCCA 297 Query 292 AGTTCAATGCAACTTGAATAG 312 ||||||||||||||||||||| Sbjct 298 AGTTCAATGCAACTTGAATAG 318 > Ahg930371 jgi|Araly1|930371|scaffold_302828.1 Length=984 Score = 311 bits (168), Expect = 2e-84 Identities = 271/320 (85%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60 |||||||||||||| |||||||||||||||||||||| | |||||||| |||||||| || Sbjct 647 ATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTC 706 Query 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCT 120 ||||||||||| ||||||| | |||||| |||| | | ||||||||||||||||||| Sbjct 707 TTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTATGGCT 766 Query 121 ACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAA-G--CAAA 177 |||||||||||| |||||| ||||||||| | || ||||||||| || ||| | ||| Sbjct 767 GCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTGGTTTTTGAT-AAAGGAAAAAA 825 Query 178 GA--CAG--GAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGT 233 || || || || ||| |||||| ||| ||||| |||||||||||||||||||||| Sbjct 826 GAGGAAGATGATGCGCAATGCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGT 885 Query 234 GGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAA 292 ||||||||||||| | || ||||| | ||||| ||||||||||| |||||||||||||| Sbjct 886 GGATCTTGGAGAA-TCTCCAAACAAAAATCTCCGACCACTTGTGTGCTCTTATGTTCCAA 944 Query 293 GTTCAATGCAACTTGAATAG 312 ||||| |||||||||||||| Sbjct 945 GTTCAGTGCAACTTGAATAG 964 > Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 Length=981 Score = 219 bits (118), Expect = 1e-56 Identities = 150/165 (91%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 691 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 750 Query 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119 ||||||||||||||||||| | ||||| ||||| | |||||||||||||||| ||| Sbjct 751 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 809 Query 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTT 164 | ||||||||||||||||||| |||||||||||||||||| |||| Sbjct 810 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTG-TTTT 853 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10988809632 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5