BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20400.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1 383 4e-106
Ahg930371 jgi|Araly1|930371|scaffold_302828.1 311 2e-84
Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 219 1e-56
> Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1
Length=318
Score = 383 bits (207), Expect = 4e-106
Identities = 285/321 (89%), Gaps = 12/321 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60
Query 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119
||||||||||||||||||| | ||||| ||||| | |||||||||||||||| |||
Sbjct 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 119
Query 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAG-CAAAG 178
| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct 120 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGGTTTTTAAT-AAAGGCAAAG 178
Query 179 ACAGGAAGC--A--C--AACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAG 232
||| || | | | ||| ||||||||||||| ||| |||||||||| || |||||||
Sbjct 179 ACATGATGGGGATGCGTAACGCAGCTTTCATCATCGGAGAGGATGGATCTTTTAAAGAAG 238
Query 233 TGGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCA 291
||||| |||||||| | |||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 239 TGGATTTTGGAGAA-TCTCGAAACAGAAATCTCGAACCACTTGTGTGCTCTTATGTTCCA 297
Query 292 AGTTCAATGCAACTTGAATAG 312
|||||||||||||||||||||
Sbjct 298 AGTTCAATGCAACTTGAATAG 318
> Ahg930371 jgi|Araly1|930371|scaffold_302828.1
Length=984
Score = 311 bits (168), Expect = 2e-84
Identities = 271/320 (85%), Gaps = 10/320 (3%)
Strand=Plus/Plus
Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60
|||||||||||||| |||||||||||||||||||||| | |||||||| |||||||| ||
Sbjct 647 ATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTC 706
Query 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCT 120
||||||||||| ||||||| | |||||| |||| | | |||||||||||||||||||
Sbjct 707 TTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTATGGCT 766
Query 121 ACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAA-G--CAAA 177
|||||||||||| |||||| ||||||||| | || ||||||||| || ||| | |||
Sbjct 767 GCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTGGTTTTTGAT-AAAGGAAAAAA 825
Query 178 GA--CAG--GAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGT 233
|| || || || ||| |||||| ||| ||||| ||||||||||||||||||||||
Sbjct 826 GAGGAAGATGATGCGCAATGCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGT 885
Query 234 GGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAA 292
||||||||||||| | || ||||| | ||||| ||||||||||| ||||||||||||||
Sbjct 886 GGATCTTGGAGAA-TCTCCAAACAAAAATCTCCGACCACTTGTGTGCTCTTATGTTCCAA 944
Query 293 GTTCAATGCAACTTGAATAG 312
||||| ||||||||||||||
Sbjct 945 GTTCAGTGCAACTTGAATAG 964
> Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945
Length=981
Score = 219 bits (118), Expect = 1e-56
Identities = 150/165 (91%), Gaps = 3/165 (2%)
Strand=Plus/Plus
Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 691 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 750
Query 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119
||||||||||||||||||| | ||||| ||||| | |||||||||||||||| |||
Sbjct 751 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 809
Query 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTT 164
| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 810 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTG-TTTT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5