BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20410.1
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929969 jgi|Araly1|929969|scaffold_302426.1 2819 0.0
Ahg474202 jgi|Araly1|474202|fgenesh2_kg.1__4156__AT1G50700.1 1626 0.0
Ahg945969 jgi|Araly1|945969|scaffold_702198.1 680 0.0
Ahg943245 jgi|Araly1|943245|scaffold_603789.1 534 8e-151
Ahg491116 jgi|Araly1|491116|fgenesh2_kg.7__549__AT4G35310.1 171 3e-41
> Ahg929969 jgi|Araly1|929969|scaffold_302426.1
Length=1673
Score = 2819 bits (1526), Expect = 0.0
Identities = 1616/1661 (97%), Gaps = 0/1661 (0%)
Strand=Plus/Plus
Query 170 TTTGAGCTTTTTAAAATCATGGGAAATTGTTTTGCCAAGAACCATGGATTGATGAAGCCA 229
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4 TTTGAGCTTTTTAAAATCATGGGGAATTGTTTTGCCAAGAACCATGGATTGATGAAGCCG 63
Query 230 CAGCAAAATGGTAATACCACTAGATCAGTTGAAGTAGGAGTAACCAACCAAGATCCACCG 289
||||||||||| ||||||||||||||||||| |||||||| ||| | ||||||||||||
Sbjct 64 CAGCAAAATGGGCATACCACTAGATCAGTTGACGTAGGAGTGACCCATCAAGATCCACCG 123
Query 290 TCGTATACTCCACAAGCGAGAACCACTCAGCAGCCGGAGAAACCAGGTTCCGTGAATAGT 349
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 124 TCGTATACTCCACAAGCGAGAAGCACTCAGCAGCCTGAGAAACCAGGTTCCGTGAATAGT 183
Query 350 CAACCACCACCGTGGAGGGCGGCGGCTGCAGCACCAGGACTAAGTCCCAAGACCACCACT 409
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 184 CAACCACCACCGTGGAGGGCGGCGGCAGCAGCGCCAGGACCAAGTCCCAAGACCACCACT 243
Query 410 AAGAGCAATTCAATACTAGAGAACGCTTTCGAAGACGTGAAGCTCTTTTACACATTGGGT 469
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 244 AAGAGCAATTCAATACTAGAGAACGCTTTCGAAGATGTGAAGCTATTCTACACATTGGGT 303
Query 470 AAAGAGCTAGGTCGTGGTCAATTTGGGGTAACGTATCTGTGCACAGAGAATTCCACGGGG 529
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 304 AAAGAGCTAGGTCGTGGGCAATTTGGGGTAACGTATCTGTGCACAGAGAATTCGACGGGG 363
Query 530 AAGAAGTACGCTTGCAAATCGATCTCGAAGAAGAAGCTGGTGACTAAAGCTGATAAGGAT 589
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 364 AAGAAGTACGCTTGCAAATCGATCTCAAAGAAGAAGCTGGTGACGAAAGCTGATAAGGAT 423
Query 590 GATATGAGGAGAGAGATTCAGATAATGCAGCATTTGAGTGGGCAGCCTAATATTGTGGAG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 424 GATATGAGGAGAGAGATTCAGATAATGCAGCATTTGAGTGGGCAGCCTAATATAGTGGAG 483
Query 650 TTTAAAGGAGCTTATGAGGATGAGAAAGCTGTGAATTTGGTGATGGAGCTTTGTGCTGGT 709
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 484 TTTAAAGGAGCTTATGAGGATGAGAAAGCTGTGAACTTGGTGATGGAGCTTTGTGCTGGT 543
Query 710 GGTGAATTGTTTGATAGAATCATTGCTAAGGGACATTACACTGAGAGAGCTGCTGCTTCT 769
|||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 544 GGTGAATTGTTTGATAGAATCATTGCTAAGGGACATTACAGTGAGAGGGCAGCTGCTTCT 603
Query 770 GTTTGTAGACAGATTGTGAATGTTGTCAAGATTTGTCATTTCATGGGTGTGTTGCATAGA 829
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 604 GTTTGTAGACAGATTGTGAATGTGGTCAAGATTTGTCATTTCATGGGTGTGTTGCATAGA 663
Query 830 GACTTGAAGCCTGAGAATTTCTTGCTCTCTAGCAAAGATGAGAAGGCTTTGATCAAGGCT 889
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 664 GACTTGAAGCCTGAGAATTTCTTGCTTTCTAGCAAAGATGAGAAGGCTTTGATCAAGGCT 723
Query 890 ACTGATTTCGGATTGTCTGTCTTTATTGAAGAGGGAAAAGTATATAGAGATATTGTTGGG 949
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 724 ACTGATTTCGGCTTGTCTGTCTTCATTGAAGAGGGAAAAGTATATAGAGATATTGTTGGG 783
Query 950 AGTGCATACTATGTTGCTCCAGAAGTCTTACGTCGCAGATATGGGAAAGAAGTTGATATC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AGTGCATACTATGTTGCTCCAGAAGTCTTACGTCGCAGATATGGGAAAGAAGTTGATATC 843
Query 1010 TGGAGTGCTGGAATCATCTTATACATTCTACTCAGCGGTGTGCCCCCGTTTTGGGCTGAG 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TGGAGTGCTGGAATCATCTTATACATTCTACTCAGCGGTGTGCCCCCGTTTTGGGCTGAA 903
Query 1070 ACTGAGAAAGGAATATTTGATGCTATATTGGAAGGCCATATCGACTTTGAGAGCCAACCA 1129
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 ACCGAGAAAGGAATATTTGATGCTATATTGGAAGGCCATATCGACTTTGAGAGCCAACCA 963
Query 1130 TGGCCGTCAATCTCCAGCAGTGCCAAAGATTTGGTACGTAGAATGTTGACTGCGGATCCA 1189
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TGGCCGTCAATCTCCAACAGTGCCAAAGATTTGGTACGTAGAATGTTGACTGCGGATCCA 1023
Query 1190 AAAAGGCGGATTTCTGCTGCTGATGTTCTTCAGCATCCATGGCTTAGAGAAGGTGGAGAA 1249
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1024 AAAAGGCGTATTTCTGCTGCTGATGTTCTTCAACATCCATGGCTTAGAGAAGGTGGAGAA 1083
Query 1250 GCATCAGACAAGCCAATTGACAGTGCTGTTCTCTCAAGGATGAAACAATTTAGAGCAATG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GCATCAGACAAGCCAATTGACAGTGCTGTTCTCTCAAGGATGAAACAATTTAGAGCAATG 1143
Query 1310 AATAAGCTAAAGAAACTTGCTTTAAAGGTCATAGCGGAGAATATTGACACGGAAGAAATC 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AATAAGCTAAAGAAACTTGCTTTAAAGGTCATAGCGGAGAATATTGACACGGAAGAAATC 1203
Query 1370 CAAGGATTGAAGGCAATGTTTGCTAACATAGACACTGACAACAGTGGCACAATCACTTAT 1429
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1204 CAAGGATTGAAGGCAATGTTTGCTAACATAGACACAGACAACAGTGGCACAATCACGTAT 1263
Query 1430 GAAGAACTGAAAGAAGGATTAGCCAAATTGGGATCTAAACTCACAGAGGCAGAAGTGAAA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GAAGAACTGAAAGAAGGATTAGCCAAATTGGGATCTAAACTCACAGAGGCAGAAGTGAAA 1323
Query 1490 CAGCTCATGGATGCTGCTGATGTTGATGGGAACGGGTCCATCGACTACATAGAGTTTATT 1549
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1324 CAGCTCATGGATGCTGCTGATGTTGATGGGAACGGGTCAATCGACTACATAGAGTTTATT 1383
Query 1550 ACAGCAACAATGCATAGGCACAGGCTTGAAAGTAATGAGAATCTTTACAAAGCTTTCCAG 1609
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ACCGCAACAATGCATAGGCACAGGCTTGAAAGTAATGAGAATCTTTACAAAGCTTTCCAG 1443
Query 1610 CATTTTGACAAAGACAGCAGCGGATACATTACAATAGACGAACTGGAATCTGCATTGAAG 1669
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1444 CATTTTGACAAAGACAGCAGCGGATACATTACAATAGACGAATTGGAATCTGCATTGAAG 1503
Query 1670 GAATATGGAATGGGAGATGATGCAACAATCAAAGAGGTTTTGTCAGATGTCGACTCCGAT 1729
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1504 GAATATGGAATGGGAGATGATGCAACAATCAAAGAGGTTCTGTCAGATGTCGACTCGGAT 1563
Query 1730 AACGATGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGGAAATCCACAA 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AACGATGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGGAAATCCACAA 1623
Query 1790 CAACAACAACCTCGGCTGTTCTAGTGGACATTGTTGCTGGA 1830
||||||||||| |||||||||||| |||||||| | |||||
Sbjct 1624 CAACAACAACCGCGGCTGTTCTAGGGGACATTGCTCCTGGA 1664
> Ahg474202 jgi|Araly1|474202|fgenesh2_kg.1__4156__AT1G50700.1
Length=1921
Score = 1626 bits (880), Expect = 0.0
Identities = 1217/1381 (88%), Gaps = 18/1381 (1%)
Strand=Plus/Plus
Query 422 ATACTAGAGAACG-CTTTCGAAGACGTGAAGCTCTTTTACACATTGGGTAAAGAGCTAGG 480
||||| ||||| | | | |||||||||||| || || ||||| || | ||||| | ||
Sbjct 457 ATACTCGAGAA-GCCGTACGAAGACGTGAAACTGTTCTACACGCTGAGCAAAGAATTGGG 515
Query 481 TCGTGGTCAATTTGGGGTAACGTATCTGTGCACAGAGAATTCCACGGGGAAGAAG-TACG 539
||| || || ||||| ||||||||||||||||||||||| || ||||||||| || | ||
Sbjct 516 TCGAGGCCAGTTTGGAGTAACGTATCTGTGCACAGAGAAGTCGACGGGGAAG-AGATTCG 574
Query 540 CTTGCAAATCGATCTCGAAGAAGAAGCTGGTGACTAAAGCTGATAAGGATGATATGAGGA 599
||||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||||||||
Sbjct 575 CTTGCAAGTCGATTTCGAAGAAGAAACTTGTGACGAAAGCTGATAAAGAAGATATGAGGA 634
Query 600 GAGAGATTCAGATAATGCAGCATTTGAGTGGGCAGCCTAATATTGTGGAGTTTAAAGGAG 659
||||||||||||| ||||||||||||||||| || ||||| ||||| |||| ||||||||
Sbjct 635 GAGAGATTCAGATCATGCAGCATTTGAGTGGACAACCTAACATTGTTGAGTATAAAGGAG 694
Query 660 CTTATGAGGATGAGAAAGCTGTGAATTTGGTGATGGAGCTTTGTGCTGGTGGTGAATTGT 719
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 695 CTTATGAAGATGAGAAAGCTGTGAATTTGGTTATGGAGCTTTGTGCTGGTGGTGAATTGT 754
Query 720 TTGATAGAATCATT-GCTAAGGGACATTACACTGAGAGAGCTGCTGCTTCTGTTTGTAGA 778
|||||||||| || || ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 755 TTGATAGAATT-TTAGCAAAGGGACATTACAGTGAGAGAGCAGCTGCTTCTGTTTGTAGA 813
Query 779 CAGATTGTGAATGTTGTCAAGATTTGTCATTTCATGGGTGTGTTGCATAGAGACTTGAAG 838
|||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 814 CAGATTGTTAATGTTGTCAACATTTGTCATTTCATGGGTGTGATGCATAGAGACTTAAAG 873
Query 839 CCTGAGAATTTCTTGCTCTCTAGCAAAGATGAGAAGGCT-TTGATCAAGGCTACTGATTT 897
||||||||||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct 874 CCTGAGAATTTCTTGTTATCTAGCAAAGATGAGAAGGCTCTT-ATTAAAGCCACTGATTT 932
Query 898 CGGATTGTCTGTCTTTATTGAAGA-GGGAAAAGTATATAGAGATATTGTTGGGAGTGCAT 956
|||||| || |||||||||||||| |||| | || |||| || ||| |||||||||||||
Sbjct 933 CGGATTATCGGTCTTTATTGAAGAAGGGAGA-GTGTATAAAGGTATAGTTGGGAGTGCAT 991
Query 957 ACTATGTTGCTCCAGAAGTCTT-ACGTCGCAGATATGGGAAAGAAGTTGATATCTGGAGT 1015
| ||||| ||||| ||||| || | | || ||||| || |||||| | ||||| ||||||
Sbjct 992 ATTATGTAGCTCCTGAAGTTTTGAAG-CGTAGATACGGTAAAGAAATCGATATATGGAGT 1050
Query 1016 GCTGGAATCAT-CTTATACATTCTACTCAGCGGTGTGCCCCCGTTTTGGGCTGAGACTGA 1074
|||||||| || || |||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 1051 GCTGGAATTATACT-ATACATTCTACTTAGCGGTGTGCCTCCGTTTTGGGCTGAAACCGA 1109
Query 1075 GAAAGGAATATTTGATGCTATATTGGAAGGCCATATCGACTTTGAGAGCC-AACCATGGC 1133
|||||| ||||||||||||||||||||||| | ||||||||||| | || |||| ||||
Sbjct 1110 GAAAGGGATATTTGATGCTATATTGGAAGGTGAAATCGACTTTGA-ATCCCAACCTTGGC 1168
Query 1134 CGTCAATCTCCAGCAGTGCCAAAGATTTGGTACGTAGAATGTTGACTGCG-GATCCAAAA 1192
| ||||| |||| ||||| |||||||||||||| ||||||||||| | ||||| |||
Sbjct 1169 CTTCAATTTCCAATAGTGCTAAAGATTTGGTACGCAGAATGTTGACA-CAAGATCCGAAA 1227
Query 1193 AGGCGGATTTCTGCTGCTGATGTTCTTCAGCATCCATGGCTTAGAGAAGGTGGAGAAGCA 1252
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1228 AGACGGATTTCTGCTGCTGAAGTTCTTCAGCATCCATGGCTAAGAGAAGGTGGAGAAGCA 1287
Query 1253 TCAGACAAGCCAATTGACAGTGCTGTTCTCTCAAGGATGAAACAATTTAGAGCAATGAAT 1312
||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1288 TCAGATAAGCCTATTGATAGTGCTGTTCTCTCAAGGATGAAGCAATTTAGAGCGATGAAT 1347
Query 1313 AAGCTAAAGAAACTTGCTTTAAAGGTCATAGCGGAGAATATTGACACGGAAGAAATCCAA 1372
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1348 AAACTAAAGAAACTTGCTTTAAAGGTCATTGCGGAGAACATTGACACGGAAGAAATACAA 1407
Query 1373 GGATTGAAGGCAATGTTTGCTAACATAGACACTGACAACAGTGGCACAATCACTTATGAA 1432
|| || ||||| ||||||||||| |||||||| ||||| ||||| |||||||| ||||||
Sbjct 1408 GGCTTAAAGGCGATGTTTGCTAATATAGACACAGACAATAGTGGTACAATCACATATGAA 1467
Query 1433 GAACTGAAAGAAGGATTAGCCAAATTGGGATCTAAACTCACAGAGGCAGAAGTGAAACAG 1492
|||||||||||||||||||||||| ||||||| |||||||| || || ||||||||||||
Sbjct 1468 GAACTGAAAGAAGGATTAGCCAAACTGGGATCAAAACTCACTGAAGCTGAAGTGAAACAG 1527
Query 1493 CTCATGGATGCTGCTGATGTTGATGGGAACGGGTCCATCGACTACATAGAGTTTATTACA 1552
|||||||||||||||||||||||||| || ||||| || || ||||| |||||||||||
Sbjct 1528 CTCATGGATGCTGCTGATGTTGATGGAAATGGGTCAATTGATTACATTGAGTTTATTACT 1587
Query 1553 GCAACAATGCATAGGCACAGGCTTGAAAGTAATGAGAATCTTTACAAAGCTTTCCAGCAT 1612
|||||||||||||| || ||||||||||||||||| || ||||||| ||| ||||| |||
Sbjct 1588 GCAACAATGCATAGACATAGGCTTGAAAGTAATGAAAACCTTTACAGAGCCTTCCAACAT 1647
Query 1613 TTTGACAAAGACAGCAGCGGATACATTACAATAGACGAACTGGAATCTGCATTGAAGGAA 1672
||||||||||| | | ||||||||||| |||||||| || || |||| |||||||||
Sbjct 1648 TTTGACAAAGATGGGTGTGGATACATTACGATAGACGAGCTAGAGGCTGCTTTGAAGGAA 1707
Query 1673 TATGGAATGGGAGATGATGCAACAATCAAAGAGGTTTTGTCAGATGTCGACTCCGATAAC 1732
|||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 1708 TATGGAATGGGAGATGATGCTACAATCAAAGAGATTTTGTCAGATGTCGACGCCGATAAT 1767
Query 1733 GATGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGGAAATCCACAACAA 1792
|| |||||||| |||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct 1768 GACGGTAGAATTAACTATGAAGAGTTTTGTGCTATGATGAGAAGTGGGAATCCACAACAA 1827
Query 1793 C 1793
|
Sbjct 1828 C 1828
> Ahg945969 jgi|Araly1|945969|scaffold_702198.1
Length=1695
Score = 680 bits (368), Expect = 0.0
Identities = 1047/1365 (77%), Gaps = 85/1365 (6%)
Strand=Plus/Plus
Query 456 TTTACACATTGGGTAAAGAGCTAGGTCGTGGTCAATTTGGGGTAACGTA-TCTGTGCACA 514
||||||| || ||||| || ||||||| ||||||||||| |||| || || |||| |
Sbjct 312 TTTACACGTTAGGTAACGAATTAGGTCGAGGTCAATTTGGTATAACCTACACT-TGCAAA 370
Query 515 GAGAATTCCACGGGGAAGA-AGTACGCTTGCAAATCGAT-CTCGAAGAAGAAGCTGGTGA 572
|||||||| || ||||| | | |||||||||||||| || ||| |||| ||| || ||
Sbjct 371 GAGAATTCAACAGGGAACACA-TACGCTTGCAAATCAATACTC-AAGAGGAAACTAACGA 428
Query 573 CTAAAGCTGATA-AG-GATGATATGAGGAGAGAGATTCAGATAATGCAGCATTTGAGTGG 630
||||| | | || |||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 429 -GAAAGC-AAGACAGAGATGATGTGAAGAGAGAGATTCAGATAATGCAGCATTTGTCTGG 486
Query 631 GC-AGCCTAATATTGTGGAGTTTAAAGGAGCTTATGAGGATGAGA-AAGCTGTGA-ATTT 687
| || || ||||| ||| | || || || ||||| ||| ||| || | | | ||||
Sbjct 487 ACAAG-AGAACATTGTTGAGATCAAGGGTGCCTATGAAGAT-AGACAATCAAT-ACATTT 543
Query 688 GGTGATGGAGCTT-TGTGCTGGTGGTGAATTGTTTGATAGAATCATTGCT-AAGGGACAT 745
|||||||||| || |||| |||| |||||||||||||||| || || ||| || ||||||
Sbjct 544 GGTGATGGAG-TTGTGTGGTGGTAGTGAATTGTTTGATAGGATTATAGCTCAA-GGACAT 601
Query 746 TACACTGAGAGAGCTGCTGCTTCTGTT-TGTAGA-CAGATTGTGAATGTTGTCAAGATTT 803
||| |||||| ||| |||||| |||| | |||| | |||| |||||||||| | ||||
Sbjct 602 TACTCTGAGAAAGCAGCTGCTGGTGTTAT-TAGATC-GATTTTGAATGTTGTTGACATTT 659
Query 804 GTCATTTCATGGGTGTG-TTGCATAGAGA-CTTGAAGCCTGAGAATTTCTTGCTCTCTAG 861
||||||| ||||| ||| || ||| | || ||| ||||||||||||||||||||| ||||
Sbjct 660 GTCATTTTATGGGAGTGATT-CATCGTGATCTT-AAGCCTGAGAATTTCTTGCTCGCTAG 717
Query 862 CAAAGATGAGAAGGCTTTGATCAAGGCTACTGATTTCGGATTGTCTGTCTTTATTGAAGA 921
| |||||||| ||| || | || ||||||||||| |||||||||||||| ||||||||
Sbjct 718 TACTGATGAGAATGCTATGCTTAAAGCTACTGATTTTGGATTGTCTGTCTTCATTGAAGA 777
Query 922 -GGGAAAAGTATATAGAGATATTGTTGGGAGTGCATACTATGTTGCTCCAGAAGTCTTAC 980
||||||| | || || ||||| || || ||||| |||||||||||||| ||||| |||
Sbjct 778 AGGGAAAATT-TACAGGGATATAGTCGGAAGTGCTTACTATGTTGCTCCTGAAGTATTAA 836
Query 981 GTCGCAGATATGGGAAAGAAGTTGATATCTGGAGTGCTGGAATCATCTTATACATTCTA- 1039
| | || ||||| |||||| | ||||| |||||||| || || || |||||||| ||
Sbjct 837 GAAGAAGTTATGGAAAAGAAATCGATATTTGGAGTGCAGGGATTATTTTATACAT-CTTG 895
Query 1040 CTCAGCGGTGTGCCCCCGTTTTGGGCTGAGACTGAGAAAGGAATATTTGATGCTATATTG 1099
||| | || ||||| || ||||||||||| |||||||| || |||||||||| | |||
Sbjct 896 CTCTGTGGCGTGCCTCCTTTTTGGGCTGAAACTGAGAAGGGGATATTTGATG--AGATTA 953
Query 1100 GAA-GGCC-ATATCGACTTTGAGAGCCAACCATGGCCGTC-A-ATCTCCAGCAGTGCCAA 1155
|| || | || || |||||||||||||||||||| || | |||| || ||||| ||
Sbjct 954 TAAAGGGGGAAATTGATTTTGAGAGCCAACCATGGCCCTCTATATCTG-AG-AGTGCTAA 1011
Query 1156 AGAT-TTG-GTACGTAGAATG-TTGACTGCGGATCCAAA--AAGGCGGATTTCTGCTGCT 1210
||| ||| | | | || || || ||| ||| || || || || || || || ||
Sbjct 1012 AGACCTTGTG-AGGAAGT-TGCTT-ACTAAGGACCCTAAGCAA--CGAATCTCAGCGGCA 1066
Query 1211 GATGTTCTTCAGCATCCATGGCTTAGAGAAGGTGGAGAAGCATCAGACAAGCCAATTGAC 1270
| | |||| | ||||| ||| | | | | || ||||||||| |||||||||| |||||
Sbjct 1067 CAAGCTCTTGAACATCCTTGGATCA-A-A-GGAGGAGAAGCACCAGACAAGCCTATTGAT 1123
Query 1271 AGTGCTGT-TCTCTCAAGGATGAAACAATTTAGAGCAATGAATAAGCTAAAGAAACTTGC 1329
|| ||||| | | || ||||||| ||||| |||||||||| ||||| ||||| || ||
Sbjct 1124 AGCGCTGTGT-TATCCCGGATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTAGC 1182
Query 1330 T-TTAAAGGTCATAGCGGAGAATATTGACACGGAAGA--AA-TCCAAGGA-TTGAAGGCA 1384
| |||| ||| || || |||| | | | ||||||| || | |||| || || ||
Sbjct 1183 TCTTAA-GGTAATTGCAGAGAGTCT---CTCGGAAGAGGAAATTAAAGGTCTTAAAACCA 1238
Query 1385 ATGTTTGCTAACATAGACACTGACAACAGTGGCACAATCACTTATGAAGAACTGAAAGAA 1444
||||||| || || || || || || ||||| ||||||||||| |||||||||||| |
Sbjct 1239 -TGTTTGCGAATATGGATACCGATAAAAGTGGAACAATCACTTACGAAGAACTGAAA-AC 1296
Query 1445 -GGATTAGCCAAA-TTGGGATCTAAACTCA-CAGAGGCAGAAGTGAAACAGCTCATGGAT 1501
|| | || ||| |||| |||||||||| | || || |||||||| || ||||||||
Sbjct 1297 CGGGCTGGCTAAACTTGGC-TCTAAACTCAAC-GAAGCTGAAGTGAAGCAACTCATGGAA 1354
Query 1502 GCTGCTGATGTTGATGGGAACGGGTCCATCGACTACATAGAGTTTAT-TACAGCAACAAT 1560
|| |||||||| ||||| || || | ||||||||||| |||||||| | ||| |||||
Sbjct 1355 GCCGCTGATGTAGATGGTAATGGAACAATCGACTACATCGAGTTTATCT-CAGTGACAAT 1413
Query 1561 GCATAGGCACAGGCTTGAAA-GTAATGAGAATCT-TTACAAAGCTTTCCAGCATTTTGAC 1618
|||||| |||| ||| | | ||||| || | || |||||| ||||| | || |||
Sbjct 1414 GCATAGATACAGA-TTGGACCGGGATGAGCATTTATT-CAAAGCCTTCCAATACTTCGAC 1471
Query 1619 AAAGACAGCAGCGGATACATTACAATAGACGAACTGGAATCTGC-ATTGAAGGAATATGG 1677
||||||| |||||| | || ||||| || || |||| || || || ||| || |||||
Sbjct 1472 AAAGACAACAGCGGGTTTATCACAATGGATGAGTTGGAGTCAGCCAT-GAAAGAGTATGG 1530
Query 1678 AATGGGAGATGATGCAA-CAATCAAAGAGGTTTT-GTCAGATGTCGACTCC-GATAACGA 1734
||||||||||| || | || ||||||| || | | | || ||||| | | ||||| ||
Sbjct 1531 TATGGGAGATGAAGCTAGCA-TCAAAGAAGTCATAG-CGGAAGTCGA-TACAGATAATGA 1587
Query 1735 TGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGG 1779
||| ||||| ||||||||||| || || || ||||||||||||||
Sbjct 1588 TGGAAGAATAAACTATGAAGAATTTTGTGCGATGATGAGAAGTGG 1632
> Ahg943245 jgi|Araly1|943245|scaffold_603789.1
Length=1649
Score = 534 bits (289), Expect = 8e-151
Identities = 955/1270 (75%), Gaps = 72/1270 (6%)
Strand=Plus/Plus
Query 557 AAGAAGAAGCTGGTGACTAAAG-CTGATAAGGATGATATGAGGAGAGAGATTCAGATAAT 615
|||| |||||| || | | ||| |||||| || || ||| ||||||||||||||||||
Sbjct 370 AAGAGGAAGCTAGTTAAT-AAGTATGATAAAGAAAATTTGAAGAGAGAGATTCAGATAAT 428
Query 616 GCAGCATTTGAGTGGGCAGCCTAATATTGTGGAGTTTAAAGGAGCTTATGAGGATGAGAA 675
|||||||||| ||| || || || ||||| ||| | ||||| |||||||||||| |||
Sbjct 429 GCAGCATTTGTCTGGACAACCAAACATTGTTGAGATCAAAGGTGCTTATGAGGAT-AGAC 487
Query 676 AG-CTGTGAATTTGGTGATGGAGCTT-TGTGCTGGTGGTGAATTGTTTGATAGAATCATT 733
|| ||||| ||||||| |||||| || |||||||||||||| ||||||||||| || ||
Sbjct 488 AGTCTGTGCATTTGGTAATGGAG-TTGTGTGCTGGTGGTGAGTTGTTTGATAGGATTATA 546
Query 734 GCT-AAGGGACATTACACTGAGAGAGCTGCTGCTTCTGTT-TGTAGA-CAGATTGTGAAT 790
||| |||| |||||| ||||||||||||||||| | | | ||| || |||||||||
Sbjct 547 GCTCAAGGT-CATTACTCTGAGAGAGCTGCTGCTGGTATCAT-TAGGTCA-ATTGTGAAT 603
Query 791 GTTGT-CAAGATTTGTCATTTCATGGGTGTG-TTGCATAGAGA-CTTGAAGCCTGAGAAT 847
||||| || |||||||||||| | ||||||| || ||| |||| || ||||||||||||
Sbjct 604 GTTGTTCA-GATTTGTCATTTGAAGGGTGTGATT-CATCGAGATCTC-AAGCCTGAGAAT 660
Query 848 TTCTTGCTCTCTAGCAAAGATGAGAAGGCTTTGATCAAGGCTA-CTGATTTCGGATTGTC 906
|||||| |||| || ||||| ||||| || || | || | || | |||||||| |||||
Sbjct 661 TTCTTGTTCTCGAGTAAAGAGGAGAATGCAATGCTTAAAG-TAACCGATTTCGGGTTGTC 719
Query 907 TGTCTTT-ATTGAAGAGGGAAAAGTAT-AT-AGAGATATTGTTGGGAGTGCATACTATGT 963
| | || || ||||| |||||||| | | || ||| | |||||||| | ||||| ||
Sbjct 720 CG-CGTTCATCGAAGAAGGAAAAGT-TCACCAG-GATGTAGTTGGGAGCCCTTACTACGT 776
Query 964 TGCTCCAGAAGTCTTACGTCGCAGATATGGGAAAGAAGTTGATATCTGGAGTGCTGGAAT 1023
|||||| ||||| ||| | || || || ||||||||| | ||||| |||||||| || |
Sbjct 777 TGCTCCTGAAGTATTAAGGCGAAGTTACGGGAAAGAAATCGATATTTGGAGTGCAGGTGT 836
Query 1024 CATCTTATACATTCTACTCAGCGGTGTGCCCCCGTTTTGGGCTGAGACTGAGAAAGGAAT 1083
||| |||||||| ||||||||||||||||| || ||||||||||| | |||| | |||||
Sbjct 837 CATTTTATACATCCTACTCAGCGGTGTGCCTCCTTTTTGGGCTGACAATGAGGATGGAAT 896
Query 1084 ATTTGATGCTATAT-TGGAAGGCCATATCGACT-TTGAGAGCCAACCATGGCCGTC-A-A 1139
||| | || || | | ||||| | || || | |||| |||||||||||||| || | |
Sbjct 897 ATTCGTTGAGAT-TCTAAAAGGCGAAATTGA-TGTTGAAAGCCAACCATGGCCTTCTATA 954
Query 1140 TCTCCAGCAGTGCCAAAGAT-TTGGTACGTA-GAATGTTGACTGCGGATCCAAAAAGGCG 1197
||| || || || |||||| ||| || | | || || | || || || || || ||
Sbjct 955 TCTG-AG-AGCGCGAAAGATCTTGTTA-GAAAGA-TGCTAACCAAAGACCCGAAGAGACG 1010
Query 1198 GATTTCTGCTGCTGATGTTCTTCAGCATCCATGGCTTAGAGAAGGTGGAGAAGCATCAGA 1257
|| | ||||| | |||||| | ||||| ||| | | || || ||||||||| | ||
Sbjct 1011 AATCACGGCTGCACAGGTTCTTGAACATCCTTGGATCAAAG--GG-GGAGAAGCACCGGA 1067
Query 1258 CAAGCCAATTGACAGTGCTGT-TCTCTCAAGGATGAAACAATTTAGAGCAATGAATAAGC 1316
|||||| ||||| || |||| | | || | ||||| ||||| |||||||||| ||||
Sbjct 1068 CAAGCCTATTGATAGCACTGTGT-TATCCCGTATGAAGCAATTCCGAGCAATGAACAAGC 1126
Query 1317 TAAAGAAACTTGCTTTAAAGGTCATAGCGGAGAATAT-TGACACGGAAGAAATCCAAGGA 1375
| ||||| || ||| ||||| | | ||||||| | | | | | | | || ||| ||||
Sbjct 1127 TTAAGAAGCTAGCTCTAAAGATTAGCGCGGAGAGTCTATCAGAAG-AGGAGATCAAAGGT 1185
Query 1376 -TTGAAGGCAATGTTTGCTAACATAGACACTGACA-ACAGTGGCACAATCACTTATGAAG 1433
|| || || ||||||| || || || || | | | || || |||||||||||||||
Sbjct 1186 CTTAAAACCA-TGTTTGCGAATATGGATACCAATAGA-AGCGGGACAATCACTTATGAAC 1243
Query 1434 AACTGAAAGAA-GGATTA-GCCAAA-TTGGGATCTAAACTCACAGAGGCAGAAGTGAAAC 1490
|||| ||| | || || | | | || || | || | || | || | ||||| || |
Sbjct 1244 AACTCAAA-ACTGGGCTAAGT-AGACTTAGG-TATAGATTCTCTGAAACTGAAGTTAAGC 1300
Query 1491 AGCTCATGGATGCTGCTGATGTTGATGGGAACGGGTCCATCGACTAC-ATAGAGTTTAT- 1548
| |||||||| || |||||||| ||||| || || | || |||||| || ||||||||
Sbjct 1301 AACTCATGGAAGCGGCTGATGTGGATGGTAATGGAACAATTGACTACTAT-GAGTTTATC 1359
Query 1549 TACAGCAACAATGCATAGGCACAGGCTT-GAAAGTA-ATGAGAATCTTTACAAAGCTTTC 1606
| | || ||||||||||| ||| || || | | ||||| || | ||||||| |||
Sbjct 1360 T-CTGCGACAATGCATAGATACAAA-TTAGATCG-AGATGAGCATGTACACAAAGCATTC 1416
Query 1607 CAGCATTTTGACAAAGACAGCAGCGGATACATTACAATAGACGAACTGGAATCTG-CATT 1665
|| || ||||| ||||||| || ||| |||| || | || || ||||| || |||
Sbjct 1417 CAACACTTTGATAAAGACAACAACGGGCACATAACTAGGGATGAGTTGGAAAGTGTCAT- 1475
Query 1666 GAAGGAATATGGAATGGGAGATGATGCAA-CAATCAAAGAGGTTTTGTCAGATGTCGACT 1724
|||||||||||||||||||||||| || | || ||||||| ||| | || || || || |
Sbjct 1476 GAAGGAATATGGAATGGGAGATGAAGCTAGCA-TCAAAGAAGTTATATCCGAAGTTGA-T 1533
Query 1725 -CCGATAACGATGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGGAAAT 1783
|||| || ||||| | ||| |||| ||| || || || || |||||||||| || |
Sbjct 1534 ACCGACAATGATGGAAAAATAAACTTTGAGGAATTTTGTGCGGTGATGAGAAGCGGCA-- 1591
Query 1784 CCACAACAAC 1793
||||| ||||
Sbjct 1592 CCACA-CAAC 1600
> Ahg491116 jgi|Araly1|491116|fgenesh2_kg.7__549__AT4G35310.1
Length=2046
Score = 171 bits (92), Expect = 3e-41
Identities = 473/649 (73%), Gaps = 58/649 (9%)
Strand=Plus/Plus
Query 474 AGCTAGGTCGTGGTCAATTTGGGGTAACGTATCTGTGCACAGAGAATT-CCAC-GGGGAA 531
||||||| | ||||||||||| || ||||| || |||||| ||| || | || |
Sbjct 412 AGCTAGGACAAGGTCAATTTGGAACGACTTATCTATGTACAGAG-ATTGCCTCTGGCGTT 470
Query 532 GAAGTACGCTTGCAAATCGATCTCGAAGAAGAAGCTGGTGACTAAAGCTGATAAGGATGA 591
| | |||||||| || || || || |||| |||| || | |||||| ||| || ||
Sbjct 471 G-ACTACGCTTGTAAGTCAATATCCAAGAGGAAGTTGATCTCTAAAGAAGATGTTGAGGA 529
Query 592 TATGAGGAGAGAGATTCAGATAATGCAGCATTTGAG-TGGGCAGC-CTAATATTGTGGA- 648
| | || || ||||||||||||||||| |||||| | ||| || | || || || ||
Sbjct 530 TGTTAGAAGGGAGATTCAGATAATGCATCATTTG-GCTGGCCA-CGGAAACATCGT-GAC 586
Query 649 GTTTAAAGGAGCTTATGAGGA---TGAGAAAGCTGTGA-ATTTGGTGATGGAGCTTTGTG 704
| ||||||||||||||||||| | | | | | | | | || || |||||||||||||
Sbjct 587 GATTAAAGGAGCTTATGAGGACTCTTTGTATG-T-TCACA-TT-GTTATGGAGCTTTGTG 642
Query 705 CTGGTGGTGAATTGTTTGATAGAATCATTGCTA-AG-GGACATTACACTGAGA-G--AGC 759
|||| ||||||||||||||||| || ||| | | || |||||||| | ||||| | |||
Sbjct 643 CTGGAGGTGAATTGTTTGATAGGATTATT-C-AGAGAGGACATTATAGTGAGAGGAAAGC 700
Query 760 TGCTGCTTCTGTTTGTAGACAGATTGT-GAATGTTG-TCAAGATTTGTCATTTC-ATGGG 816
||||| ||| | ||| ||||| | |||| | ||| ||||| ||| | ||
Sbjct 701 TGCTG-AGCTGACT-AAGA-TCATTGTCG-GGGTTGTTGAAG-CGTGTCA-TTCGCTTGG 754
Query 817 TGTGT-TGCATAGAGACTTGAAGCCTGAGAATTTCTTGCTC-TCTAGCAAAGATGA-GAA 873
||| | |||||||||||||||||||||||||||||||| | | || || ||||| ||
Sbjct 755 TGT-TATGCATAGAGACTTGAAGCCTGAGAATTTCTTGTTGGT-TAATAAGGATGATGAT 812
Query 874 GGCTTTGATCAAGGCTACTGATTTCGGATTGTCTGTCTTTATTGAAG--AGGGAAAAGTA 931
|| | ||||||||| |||||| || | ||||||||| || || ||| ||| ||
Sbjct 813 TTCTCTC-TCAAGGCTATTGATTTTGGCCTATCTGTCTTT-TTCAAACCAGGTCAAA-TA 869
Query 932 TAT-AGAGATATTGTTGGGAGTGCATACTATGTTGCTCCAGAAGTCTTACGTCGCA-GAT 989
| | | ||| ||||||| ||| |||| ||||||||||| || || || | || | | |
Sbjct 870 T-TCACTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGC-TCAAACGTT 927
Query 990 ATGGGAAAGAAGTTGATATCTGGAGTGCTGGAATCAT-CT-TATACATT-CTACTCAGCG 1046
||||| |||| |||| | |||| |||||| | || || |||| ||| ||| || |
Sbjct 928 ATGGGCCTGAAGCTGATGTGTGGACTGCTGGTGTTATACTGTATATATTGCTA---AGTG 984
Query 1047 GTGTGCCC-CCGTTT-TGGGCTGAGACTGAGAAAGGAATATTTGATGCT 1093
| || ||| || ||| ||||| || || || |||| ||||||||||||
Sbjct 985 GAGT-CCCGCC-TTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79380070580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5