BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20430.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479567 jgi|Araly1|479567|fgenesh2_kg.3__2268__AT3G20430.1 898 0.0
> Ahg479567 jgi|Araly1|479567|fgenesh2_kg.3__2268__AT3G20430.1
Length=778
Score = 898 bits (486), Expect = 0.0
Identities = 548/577 (95%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 145 ATGGAGGGAGAAGAGAGTTTGTTGGATGCTATAAATGAAGAAGACGGATTTGAAAACTTG 204
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1 ATGGAGGGAGAAGAGAGTTTGTTGGATGCTATTAATGAAGAAGACGGATTTGAAAACATG 60
Query 205 GAGGATGTTGAAATGGTTGATGTTGAAGAAGGGGAGATTGTTGTGGATCATGATTTAGAT 264
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAGGATGTTGACATGGTTGATGTTGAAGAAGGGGAGATTGTTGTGGATCATGGCTTAGAT 120
Query 265 TCTGGAGAGAGGCAAAA---TGA---TGATGGTGATGGAGTCAAAGATAAAG-AGGCGAT 317
||||||||||| ||||| ||| |||||||||||||||||||||| ||| ||| |||
Sbjct 121 TCTGGAGAGAGACAAAATGGTGATGGTGATGGTGATGGAGTCAAAGATCAAGAAGG-GAT 179
Query 318 TTTGGGTGagaagaatggactgcaacagacaaacaagaacaagaggaagaagaagaagaa 377
|||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||
Sbjct 180 TTTGGGTGAGAAGAATGGACAGCAGCAGCCAAACAAGAACAAGAAGAAGAAGAAGAAGAA 239
Query 378 aaagagaaaagGCCCTGTGATGGACAAACCCATGAGTGTAGACTGGTTTGTTAGGGATAC 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAGAGAAAAGGCCCTGTGATGGACAAACCCATGAGTGTAGACTGGTTTGTTAGGGATAC 299
Query 438 TTGTAGACGCCTTAAGGAGAAGAAGTCTTACATGATATACACAGCTGTTGGGTGTCTCGG 497
|||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 300 TTGTAGACGCCTCAAGGAAAAGAAGTCTTACATGGTATACACAGCTGTTGGGTGTCTTGG 359
Query 498 AATTGCTGCCTTAAGTGATCTTGTCAATGAGGTGGTAGCAATTGAGACCTGTGGAGGTCA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATTGCTGCCTTAAGTGATCTTGTCAATGAGGTGGTAGCAATTGAGACCTGTGGAGGTCA 419
Query 558 GGTGACTGCTGATGGCACTAGGAAACGGACAAGTGGTGGTGTATTGTGGAACATCATCAA 617
| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GTTGACTGCTGATGGCAATAGGAAACGGTCAAGTGGTGGTGTATTGTGGAACATCATCAA 479
Query 618 AGCGAGACAGCCTGAAGCTTATAGAGAGATAATGAAAAAGACCAAGGAGTTTGAGAAACA 677
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCGAGACAGCCTGCAGCTCATAGAGAGATAATGAAAAAGACCAAGGAGTTTGAGAAACA 539
Query 678 ATTTAGGCAACCAAACACGAGACCAAAATCAGGGCCT 714
|||||||||||||||||||||||| ||||||||||||
Sbjct 540 ATTTAGGCAACCAAACACGAGACCGAAATCAGGGCCT 576
Score = 163 bits (88), Expect = 2e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 804 GGTAGCTGAGCAAACTGAATCCAAACCGGAAAAGGAAAGGAAATCTGTTCATGAGAGGAT 863
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGTAGCTGAGCAGACTGAATCCAAACCGGAAAAGGAAAGGAAATCTGTTCATGAGAGGAT 665
Query 864 CAGGGTACCTGTTTCATATGATGACCTTTTCAGAGAT 900
||||| |||||||||||||||||||||| ||||||||
Sbjct 666 CAGGGCACCTGTTTCATATGATGACCTTATCAGAGAT 702
Score = 100 bits (54), Expect = 2e-20
Identities = 68/74 (92%), Gaps = 4/74 (5%)
Strand=Plus/Plus
Query 971 tttttttAACTAGGTAAACAATATATCTAAGCTACTGGATGACTTCT-CT-T-GTGGAAA 1027
||||||| ||||||| |||||||||||||||||||||||| |||||| || | |||||||
Sbjct 706 TTTTTTT-ACTAGGTGAACAATATATCTAAGCTACTGGATAACTTCTTCTCTTGTGGAAA 764
Query 1028 GCAATTGTTTTGTC 1041
||||||||||||||
Sbjct 765 GCAATTGTTTTGTC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5