BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20450.1
Length=545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497321 jgi|Araly1|497321|fgenesh2_kg.219__2__AT3G20450.1 730 0.0
Ahg479569 jgi|Araly1|479569|fgenesh2_kg.3__2270__AT3G20450.1 719 0.0
> Ahg497321 jgi|Araly1|497321|fgenesh2_kg.219__2__AT3G20450.1
Length=449
Score = 730 bits (395), Expect = 0.0
Identities = 432/450 (96%), Gaps = 1/450 (0%)
Strand=Plus/Plus
Query 1 GATCCACTCTAAACTTCTCCATGTACTAATAAAAAATGTTCGTAGAGATGTTTCAACTTC 60
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1 GATCCATTCTAAACTTCTCCATGTACTAA-CAAAAATGTTCGTAGAGATGTTTCAGCTTC 59
Query 61 TATTCACAATCGTGACAATCGAAGCCGTCCTGATATTAACACTCGGGTTCGGGACTCCAG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TATTCACAATCGTGTCAATCGAAGCCGTCCTGATATTAACACTCGGGTTCGGGACTCCAG 119
Query 121 CGAGAAGAGTGGTGGTGAAACTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAGAAGAGTGGTGGTGAAATTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTG 179
Query 181 CGAAAACGGTCGCAGCCACTATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACTATTC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 CGAAAACGGTCGCAGCCACAATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACGATTC 239
Query 241 AAATCCACACAAGGGTCTCTGAATCTGGTGGTGTAGCTAACTCGACCGATCAAGTCATGT 300
|||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 240 AAATACACACAAGGGTATCTGACTCTGGAGGTGTAGCTAACTCGACCGATCAAGTCATGT 299
Query 301 TTGCCAATCGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCCATGGTTA 360
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TTGCGAATTGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCAATGGTTA 359
Query 361 TAGATAGAATGCATTACTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTG 420
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGACAGAATGCATTATTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTG 419
Query 421 CTGTAAAGAAGGGCAAAACCGGTGCTtaaa 450
||||||| ||||||||||||||||||||||
Sbjct 420 CTGTAAATAAGGGCAAAACCGGTGCTTAAA 449
> Ahg479569 jgi|Araly1|479569|fgenesh2_kg.3__2270__AT3G20450.1
Length=449
Score = 719 bits (389), Expect = 0.0
Identities = 430/450 (96%), Gaps = 1/450 (0%)
Strand=Plus/Plus
Query 1 GATCCACTCTAAACTTCTCCATGTACTAATAAAAAATGTTCGTAGAGATGTTTCAACTTC 60
|||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct 1 GATCCATTCTAAACTTCTCCATGTACTAA-CAAAAATGCTCGTAGAGATGTTTCAGCTTC 59
Query 61 TATTCACAATCGTGACAATCGAAGCCGTCCTGATATTAACACTCGGGTTCGGGACTCCAG 120
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 TATTCACAATCGTGTCAATCGAAGCCGTCCTGATATTAACACTGGGGTTCGGGACTCCAG 119
Query 121 CGAGAAGAGTGGTGGTGAAACTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAGAAGAGTGGTGGTGAAATTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTG 179
Query 181 CGAAAACGGTCGCAGCCACTATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACTATTC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 CGAAAACGGTCGCAGCCACAATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACGATTC 239
Query 241 AAATCCACACAAGGGTCTCTGAATCTGGTGGTGTAGCTAACTCGACCGATCAAGTCATGT 300
|||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 240 AAATACACACAAGGGTATCTGACTCTGGAGGTGTAGCTAACTCGACCGATCAAGTCATGT 299
Query 301 TTGCCAATCGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCCATGGTTA 360
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TTGCGAATTGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCAATGGTTA 359
Query 361 TAGATAGAATGCATTACTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTG 420
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGACAGAATGCATTATTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTG 419
Query 421 CTGTAAAGAAGGGCAAAACCGGTGCTtaaa 450
||||||| ||||||||||||||||||||||
Sbjct 420 CTGTAAATAAGGGCAAAACCGGTGCTTAAA 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19879061869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5