BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20460.1 Length=1470 Score E Sequences producing significant alignments: (Bits) Value Ahg497320 jgi|Araly1|497320|fgenesh2_kg.219__1__AT3G20460.1 2220 0.0 Ahg929974 jgi|Araly1|929974|scaffold_302431.1 2215 0.0 > Ahg497320 jgi|Araly1|497320|fgenesh2_kg.219__1__AT3G20460.1 Length=1422 Score = 2220 bits (1202), Expect = 0.0 Identities = 1349/1419 (95%), Gaps = 13/1419 (1%) Strand=Plus/Plus Query 57 ACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATCCGTTAAAGGAATTCGTGT 116 ||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| |||| Sbjct 12 ACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATCAGATAAAGGCATTGGTGT 71 Query 117 AAATAATGACGGCGAAGAG-GACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 175 | |||||| |||| | | |||||||||||||||||||||||||||||||||||||| | Sbjct 72 --A-AATGACAGCGACG-GTGACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTAA 127 Query 176 CTGCTCTCTGCGGCACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 235 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 128 CTACTCTCTGCGGTACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 187 Query 236 CCGGGATTATGGCAGGACTGAACCTTTCTTTGGCTGAGTTCTCATTCTTTGGGGCTGTCT 295 ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 188 CCGGGATTATGGCAGGACTTAACCTCTCTTTGGCTGAGTTCTCATTCTTTGGAGCTGTCT 247 Query 296 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATGTCTTTGGTC 355 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 248 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATATCTTTGGTC 307 Query 356 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATTGCCT 415 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 308 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATCGCCT 367 Query 416 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 427 Query 476 TAGCT-TCTTATGTGGTACCAGTCTATATTGTTGAAATCGCTCCCAAAAAAGTTCGTGGC 534 ||| | |||||||||||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 428 TAG-TCTCTTATGTGGTACCAGTCTACATTGTTGAAATCGCGCCCAAAAAGGTCCGAGGC 486 Query 535 ACATTCTCTGCGATTAACTCGCTTGTGATGTGTGCTAGCGTCGCCGTCACATACCTCCTT 594 || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 487 ACGTTCTCTGCGATTAACTCGCTCGTGATGTGTGGTAGCGTCGCCGTCACATACCTCCTT 546 Query 595 GGATCAGTCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 654 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 547 GGATCAATCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGCTCCTTGTGTTTTTGAA 606 Query 655 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTAGGTGGCTGTCTAGAAACGGTAGGGTG 714 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 607 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTCGGTGGCTGTCTAGAAACGGTCGGGTG 666 Query 715 AAAGAATCGGAAGTTTCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 774 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 AAAGAATCGGAAGTTGCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 726 Query 775 GCTGCAGAAATCAAAAAATATATGGATAATCTTCAAGAATTCAAAGAAGATGGTTTTTTC 834 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 727 GCTGCAGAAATCAAAAAATATATGGACAATCTTCAAGAATTCAAAGAAGATGGTTTTTTC 786 Query 835 GATCTCTTCAA-CCCACGATATTCTCGTGTCGTTACTGTTGGAATTGGATTGCTAGTACT 893 ||||||||||| ||| ||||| ||||||||| ||||||| |||||||||||||||||||| Sbjct 787 GATCTCTTCAATCCC-CGATACTCTCGTGTCATTACTGTGGGAATTGGATTGCTAGTACT 845 Query 894 ACAACAACTGGGAGGTCTCAGTGGCTATACATTTTACCTT-AGCTCGATATTCAAAAAAT 952 ||||||||| |||||||||||||||||||||||||| ||| ||||| || |||||||||| Sbjct 846 ACAACAACTCGGAGGTCTCAGTGGCTATACATTTTA-CTTGAGCTCCATTTTCAAAAAAT 904 Query 953 CGGGGTTTCCTAACAACGTAGGAGTAATGATGGCGAGCGTGGTGCAGTCTGTGACAAGCG 1012 | ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| Sbjct 905 CAGGGTTTCCTAACAACGTAGGAGTAATGGTTTCGAGCGTGGTGCAGTCCGTGACAAGCG 964 Query 1013 TTTTAGGAATAGTAATCGTGGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGAC-G 1071 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | Sbjct 965 TTTTAGGAATAGTAATCATAGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACTG 1024 Query 1072 ATCATGATGTGTTTGGGCTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGT 1131 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 -TCATGATGTGTTTGGGGTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGT 1083 Query 1132 TTACTTGAACATTACACCCCAATTTCAACATTTATGGGAGTGTTGGTTTTTCTAACTTCG 1191 ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| Sbjct 1084 TTACTTGAACATTACACACCAATTTCAACATTCATGGGAGTGTTGATTTTTCTAACTTCG 1143 Query 1192 ATTACAATCGGAATAGGAGGTATTCCATGGGTTATGATATCTGAGATGACACCGATCAAT 1251 |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 1144 ATTACAATCGGAATAGGAGGCATTCCATGGGTCATGATATCCGAGATGACACCGATCAAT 1203 Query 1252 ATAAAAGGATCAGCAGGGACGCTATGCAATTTAACTAGCTGGTCCAGCAATTGGTTCGTC 1311 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1204 ATAAAAGGATCAGCAGGGACGCTATGCAATCTAACTAGCTGGTCCAGCAATTGGTTCGTC 1263 Query 1312 TCTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACA 1371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1264 TCTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACA 1323 Query 1372 ATGATATCGGGTGTGGGCATCCTGTTTGTGATGAAGATGGTACCCGAGACTCGAGGTCGT 1431 || |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 1324 ATTATATCGGGTGTGGGCATCCTATTTGTGATAAAGATGGTACCAGAGACTCGAGGTCGT 1383 Query 1432 TCGCTCGAAGAAATTCAAGCTGCCATTACCCGATAACTT 1470 ||||||||||| ||||||||||||||||| ||||||||| Sbjct 1384 TCGCTCGAAGAGATTCAAGCTGCCATTACTCGATAACTT 1422 Score = 87.9 bits (47), Expect = 2e-16 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 1 ATGGGAGACGAACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATC 53 |||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1 ATGGGAGACGAACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATC 53 > Ahg929974 jgi|Araly1|929974|scaffold_302431.1 Length=1486 Score = 2215 bits (1199), Expect = 0.0 Identities = 1347/1418 (95%), Gaps = 11/1418 (1%) Strand=Plus/Plus Query 57 ACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATCCGTTAAAGGAATTCGTGT 116 ||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| |||| Sbjct 59 ACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATCAGATAAAGGCATTGGTGT 118 Query 117 AAATAATGACGGCGAAGAG-GACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 175 | |||||| |||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 119 --A-AATGACAGCGACG-GTGACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 174 Query 176 CTGCTCTCTGCGGCACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 235 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 CTACTCTCTGCGGTACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 234 Query 236 CCGGGATTATGGCAGGACTGAACCTTTCTTTGGCTGAGTTCTCATTCTTTGGGGCTGTCT 295 | ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 235 CGGGGATTATGGCAGGACTTAACCTCTCTTTGGCTGAGTTCTCATTCTTTGGAGCTGTCT 294 Query 296 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATGTCTTTGGTC 355 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 295 TAACAATTGGTGGACTTTTGGGAGCCGCGATGTCGGGAAAACTTGCTGATATCTTTGGTC 354 Query 356 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATTGCCT 415 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 355 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATCGCAT 414 Query 416 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 475 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 415 TCTCTCAGGCGACTTGGTCCCTTGATATTGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 474 Query 476 TAGCT-TCTTATGTGGTACCAGTCTATATTGTTGAAATCGCTCCCAAAAAAGTTCGTGGC 534 ||| | |||||||||||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 475 TAG-TCTCTTATGTGGTACCAGTCTACATTGTTGAAATCGCGCCCAAAAAGGTCCGAGGC 533 Query 535 ACATTCTCTGCGATTAACTCGCTTGTGATGTGTGCTAGCGTCGCCGTCACATACCTCCTT 594 || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 534 ACGTTCTCTGCGATTAACTCGCTCGTGATGTGTGGTAGCGTCGCCGTCACATACCTCCTT 593 Query 595 GGATCAGTCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 654 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 GGATCAATCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 653 Query 655 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTAGGTGGCTGTCTAGAAACGGTAGGGTG 714 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 654 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTCGGTGGCTGTCTAGAAACGGTCGGGTG 713 Query 715 AAAGAATCGGAAGTTTCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 774 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AAAGAATCGGAAGTTGCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 773 Query 775 GCTGCAGAAATCAAAAAATATATGG-ATAATCTTCAAGAATTCAAAGAAGATGGTTTTTT 833 || |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 774 GCCGCAGAAATCAAAAAATATATGGAAT-ATCTTCAAGAATTCAAAGAAGATGGTTTTTT 832 Query 834 CGATCTCTTCAACCCACGATATTCTCGTGTCGTTACTGTTGGAATTGGATTGCTAGTACT 893 |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| Sbjct 833 GGATCTCTTCAACCCACGATACTCTCGTGTCATTACTGTGGGAATTGGATTGCTAGTACT 892 Query 894 ACAACAACTGGGAGGTCTCAGTGGCTATACATTTTACCTT-AGCTCGATATTCAAAAAAT 952 ||| ||||| |||||||||||||||||||||||||| ||| ||||| || |||||||||| Sbjct 893 ACAGCAACTCGGAGGTCTCAGTGGCTATACATTTTA-CTTGAGCTCCATTTTCAAAAAAT 951 Query 953 CGGGGTTTCCTAACAACGTAGGAGTAATGATGGCGAGCGTGGTGCAGTCTGTGACAAGCG 1012 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 952 CGGGGTTTCCTAACAACGTAGGAGTAATGATTTCGAGCGTGGTGCAGTCCGTGACAAGCG 1011 Query 1013 TTTTAGGAATAGTAATCGTGGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACGA 1072 ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1012 TTTTAGGAATAGTAATCATTGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACGG 1071 Query 1073 TCATGATGTGTTTGGGCTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGTT 1132 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1072 TCATGATGTGTTTGGGGTCATTAATTACAGGACTCTCGTTTTTGTTTCAGAGCTATGGTT 1131 Query 1133 TACTTGAACATTACACCCCAATTTCAACATTTATGGGAGTGTTGGTTTTTCTAACTTCGA 1192 |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1132 TACTTGAACATTACACACCAATTTCAACATTCATGGGAGTGTTGATTTTTCTAACTTCGA 1191 Query 1193 TTACAATCGGAATAGGAGGTATTCCATGGGTTATGATATCTGAGATGACACCGATCAATA 1252 ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct 1192 TTACAATCGGAATAGGAGGCATTCCATGGGTCATGATATCCGAGATGACACCGATCAATA 1251 Query 1253 TAAAAGGATCAGCAGGGACGCTATGCAATTTAACTAGCTGGTCCAGCAATTGGTTCGTCT 1312 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1252 TAAAAGGATCAGCAGGGACGCTATGCAATCTAACTAGCTGGTCCAGCAATTGGTTCGTCT 1311 Query 1313 CTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACAA 1372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 CTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACAA 1371 Query 1373 TGATATCGGGTGTGGGCATCCTGTTTGTGATGAAGATGGTACCCGAGACTCGAGGTCGTT 1432 | |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 1372 TTATATCGGGTGTGGGCATCCTATTTGTGATAAAGATGGTACCAGAGACTCGAGGTCGTT 1431 Query 1433 CGCTCGAAGAAATTCAAGCTGCCATTACCCGATAACTT 1470 |||||||||| ||||||||||||||||||||||||||| Sbjct 1432 CGCTCGAAGAGATTCAAGCTGCCATTACCCGATAACTT 1469 Score = 87.9 bits (47), Expect = 2e-16 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 1 ATGGGAGACGAACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATC 53 |||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 48 ATGGGAGACGAACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATC 100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55002313780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5