BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20460.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497320 jgi|Araly1|497320|fgenesh2_kg.219__1__AT3G20460.1 2220 0.0
Ahg929974 jgi|Araly1|929974|scaffold_302431.1 2215 0.0
> Ahg497320 jgi|Araly1|497320|fgenesh2_kg.219__1__AT3G20460.1
Length=1422
Score = 2220 bits (1202), Expect = 0.0
Identities = 1349/1419 (95%), Gaps = 13/1419 (1%)
Strand=Plus/Plus
Query 57 ACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATCCGTTAAAGGAATTCGTGT 116
||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| ||||
Sbjct 12 ACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATCAGATAAAGGCATTGGTGT 71
Query 117 AAATAATGACGGCGAAGAG-GACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 175
| |||||| |||| | | |||||||||||||||||||||||||||||||||||||| |
Sbjct 72 --A-AATGACAGCGACG-GTGACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTAA 127
Query 176 CTGCTCTCTGCGGCACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 235
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 CTACTCTCTGCGGTACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 187
Query 236 CCGGGATTATGGCAGGACTGAACCTTTCTTTGGCTGAGTTCTCATTCTTTGGGGCTGTCT 295
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 188 CCGGGATTATGGCAGGACTTAACCTCTCTTTGGCTGAGTTCTCATTCTTTGGAGCTGTCT 247
Query 296 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATGTCTTTGGTC 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 248 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATATCTTTGGTC 307
Query 356 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATTGCCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 308 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATCGCCT 367
Query 416 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 427
Query 476 TAGCT-TCTTATGTGGTACCAGTCTATATTGTTGAAATCGCTCCCAAAAAAGTTCGTGGC 534
||| | |||||||||||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 428 TAG-TCTCTTATGTGGTACCAGTCTACATTGTTGAAATCGCGCCCAAAAAGGTCCGAGGC 486
Query 535 ACATTCTCTGCGATTAACTCGCTTGTGATGTGTGCTAGCGTCGCCGTCACATACCTCCTT 594
|| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 487 ACGTTCTCTGCGATTAACTCGCTCGTGATGTGTGGTAGCGTCGCCGTCACATACCTCCTT 546
Query 595 GGATCAGTCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 654
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 547 GGATCAATCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGCTCCTTGTGTTTTTGAA 606
Query 655 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTAGGTGGCTGTCTAGAAACGGTAGGGTG 714
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 607 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTCGGTGGCTGTCTAGAAACGGTCGGGTG 666
Query 715 AAAGAATCGGAAGTTTCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 774
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAAGAATCGGAAGTTGCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 726
Query 775 GCTGCAGAAATCAAAAAATATATGGATAATCTTCAAGAATTCAAAGAAGATGGTTTTTTC 834
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 727 GCTGCAGAAATCAAAAAATATATGGACAATCTTCAAGAATTCAAAGAAGATGGTTTTTTC 786
Query 835 GATCTCTTCAA-CCCACGATATTCTCGTGTCGTTACTGTTGGAATTGGATTGCTAGTACT 893
||||||||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 787 GATCTCTTCAATCCC-CGATACTCTCGTGTCATTACTGTGGGAATTGGATTGCTAGTACT 845
Query 894 ACAACAACTGGGAGGTCTCAGTGGCTATACATTTTACCTT-AGCTCGATATTCAAAAAAT 952
||||||||| |||||||||||||||||||||||||| ||| ||||| || ||||||||||
Sbjct 846 ACAACAACTCGGAGGTCTCAGTGGCTATACATTTTA-CTTGAGCTCCATTTTCAAAAAAT 904
Query 953 CGGGGTTTCCTAACAACGTAGGAGTAATGATGGCGAGCGTGGTGCAGTCTGTGACAAGCG 1012
| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 905 CAGGGTTTCCTAACAACGTAGGAGTAATGGTTTCGAGCGTGGTGCAGTCCGTGACAAGCG 964
Query 1013 TTTTAGGAATAGTAATCGTGGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGAC-G 1071
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 965 TTTTAGGAATAGTAATCATAGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACTG 1024
Query 1072 ATCATGATGTGTTTGGGCTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGT 1131
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 -TCATGATGTGTTTGGGGTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGT 1083
Query 1132 TTACTTGAACATTACACCCCAATTTCAACATTTATGGGAGTGTTGGTTTTTCTAACTTCG 1191
||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1084 TTACTTGAACATTACACACCAATTTCAACATTCATGGGAGTGTTGATTTTTCTAACTTCG 1143
Query 1192 ATTACAATCGGAATAGGAGGTATTCCATGGGTTATGATATCTGAGATGACACCGATCAAT 1251
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1144 ATTACAATCGGAATAGGAGGCATTCCATGGGTCATGATATCCGAGATGACACCGATCAAT 1203
Query 1252 ATAAAAGGATCAGCAGGGACGCTATGCAATTTAACTAGCTGGTCCAGCAATTGGTTCGTC 1311
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1204 ATAAAAGGATCAGCAGGGACGCTATGCAATCTAACTAGCTGGTCCAGCAATTGGTTCGTC 1263
Query 1312 TCTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TCTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACA 1323
Query 1372 ATGATATCGGGTGTGGGCATCCTGTTTGTGATGAAGATGGTACCCGAGACTCGAGGTCGT 1431
|| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1324 ATTATATCGGGTGTGGGCATCCTATTTGTGATAAAGATGGTACCAGAGACTCGAGGTCGT 1383
Query 1432 TCGCTCGAAGAAATTCAAGCTGCCATTACCCGATAACTT 1470
||||||||||| ||||||||||||||||| |||||||||
Sbjct 1384 TCGCTCGAAGAGATTCAAGCTGCCATTACTCGATAACTT 1422
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGACGAACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATC 53
|||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATGGGAGACGAACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATC 53
> Ahg929974 jgi|Araly1|929974|scaffold_302431.1
Length=1486
Score = 2215 bits (1199), Expect = 0.0
Identities = 1347/1418 (95%), Gaps = 11/1418 (1%)
Strand=Plus/Plus
Query 57 ACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATCCGTTAAAGGAATTCGTGT 116
||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| ||||
Sbjct 59 ACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATCAGATAAAGGCATTGGTGT 118
Query 117 AAATAATGACGGCGAAGAG-GACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 175
| |||||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 --A-AATGACAGCGACG-GTGACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 174
Query 176 CTGCTCTCTGCGGCACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 235
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTACTCTCTGCGGTACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 234
Query 236 CCGGGATTATGGCAGGACTGAACCTTTCTTTGGCTGAGTTCTCATTCTTTGGGGCTGTCT 295
| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 235 CGGGGATTATGGCAGGACTTAACCTCTCTTTGGCTGAGTTCTCATTCTTTGGAGCTGTCT 294
Query 296 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATGTCTTTGGTC 355
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 295 TAACAATTGGTGGACTTTTGGGAGCCGCGATGTCGGGAAAACTTGCTGATATCTTTGGTC 354
Query 356 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATTGCCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 355 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATCGCAT 414
Query 416 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 415 TCTCTCAGGCGACTTGGTCCCTTGATATTGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 474
Query 476 TAGCT-TCTTATGTGGTACCAGTCTATATTGTTGAAATCGCTCCCAAAAAAGTTCGTGGC 534
||| | |||||||||||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 475 TAG-TCTCTTATGTGGTACCAGTCTACATTGTTGAAATCGCGCCCAAAAAGGTCCGAGGC 533
Query 535 ACATTCTCTGCGATTAACTCGCTTGTGATGTGTGCTAGCGTCGCCGTCACATACCTCCTT 594
|| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 534 ACGTTCTCTGCGATTAACTCGCTCGTGATGTGTGGTAGCGTCGCCGTCACATACCTCCTT 593
Query 595 GGATCAGTCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 654
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGATCAATCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 653
Query 655 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTAGGTGGCTGTCTAGAAACGGTAGGGTG 714
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 654 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTCGGTGGCTGTCTAGAAACGGTCGGGTG 713
Query 715 AAAGAATCGGAAGTTTCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 774
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AAAGAATCGGAAGTTGCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 773
Query 775 GCTGCAGAAATCAAAAAATATATGG-ATAATCTTCAAGAATTCAAAGAAGATGGTTTTTT 833
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 774 GCCGCAGAAATCAAAAAATATATGGAAT-ATCTTCAAGAATTCAAAGAAGATGGTTTTTT 832
Query 834 CGATCTCTTCAACCCACGATATTCTCGTGTCGTTACTGTTGGAATTGGATTGCTAGTACT 893
|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 833 GGATCTCTTCAACCCACGATACTCTCGTGTCATTACTGTGGGAATTGGATTGCTAGTACT 892
Query 894 ACAACAACTGGGAGGTCTCAGTGGCTATACATTTTACCTT-AGCTCGATATTCAAAAAAT 952
||| ||||| |||||||||||||||||||||||||| ||| ||||| || ||||||||||
Sbjct 893 ACAGCAACTCGGAGGTCTCAGTGGCTATACATTTTA-CTTGAGCTCCATTTTCAAAAAAT 951
Query 953 CGGGGTTTCCTAACAACGTAGGAGTAATGATGGCGAGCGTGGTGCAGTCTGTGACAAGCG 1012
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 952 CGGGGTTTCCTAACAACGTAGGAGTAATGATTTCGAGCGTGGTGCAGTCCGTGACAAGCG 1011
Query 1013 TTTTAGGAATAGTAATCGTGGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACGA 1072
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTTTAGGAATAGTAATCATTGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACGG 1071
Query 1073 TCATGATGTGTTTGGGCTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGTT 1132
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1072 TCATGATGTGTTTGGGGTCATTAATTACAGGACTCTCGTTTTTGTTTCAGAGCTATGGTT 1131
Query 1133 TACTTGAACATTACACCCCAATTTCAACATTTATGGGAGTGTTGGTTTTTCTAACTTCGA 1192
|||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1132 TACTTGAACATTACACACCAATTTCAACATTCATGGGAGTGTTGATTTTTCTAACTTCGA 1191
Query 1193 TTACAATCGGAATAGGAGGTATTCCATGGGTTATGATATCTGAGATGACACCGATCAATA 1252
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1192 TTACAATCGGAATAGGAGGCATTCCATGGGTCATGATATCCGAGATGACACCGATCAATA 1251
Query 1253 TAAAAGGATCAGCAGGGACGCTATGCAATTTAACTAGCTGGTCCAGCAATTGGTTCGTCT 1312
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1252 TAAAAGGATCAGCAGGGACGCTATGCAATCTAACTAGCTGGTCCAGCAATTGGTTCGTCT 1311
Query 1313 CTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACAA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACAA 1371
Query 1373 TGATATCGGGTGTGGGCATCCTGTTTGTGATGAAGATGGTACCCGAGACTCGAGGTCGTT 1432
| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1372 TTATATCGGGTGTGGGCATCCTATTTGTGATAAAGATGGTACCAGAGACTCGAGGTCGTT 1431
Query 1433 CGCTCGAAGAAATTCAAGCTGCCATTACCCGATAACTT 1470
|||||||||| |||||||||||||||||||||||||||
Sbjct 1432 CGCTCGAAGAGATTCAAGCTGCCATTACCCGATAACTT 1469
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGACGAACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATC 53
|||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 48 ATGGGAGACGAACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATC 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5