BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20470.1

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479571 jgi|Araly1|479571|fgenesh2_kg.3__2272__AT3G20470.1         891    0.0  


> Ahg479571 jgi|Araly1|479571|fgenesh2_kg.3__2272__AT3G20470.1
Length=565

 Score =  891 bits (482),  Expect = 0.0
 Identities = 540/567 (95%), Gaps = 8/567 (1%)
 Strand=Plus/Plus

Query  49   ATCATCACATACGCAAAACACAAA-A---ATCGACATGGCTTCCAAGTCACTCTTTCTTG  104
            |||||||||||| ||||||||||| |   |||||||||||||||||||||||||||||||
Sbjct  1    ATCATCACATACACAAAACACAAAGATCGATCGACATGGCTTCCAAGTCACTCTTTCTTG  60

Query  105  TTGCCTTACTTGTCGGCTCTTTTGCTTTCACTTCATTTGCCAGTGTCGCTAACAGGAAGC  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGCCTTACTTGTCGGCTCTTTTGCTTTCACTTCATTTGCCAGTGTCGCTAACAGGAAGC  120

Query  165  TGAAGAGTGGTCTCGAGGACCAAAAGACATTCTTCCACCATCCAGGCGGAGGTCTCGgtg  224
            | |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct  121  TAAAGAGTGGTCTCGAGGACCAAAAGACTTTCTTCCACCATCCAGGCGGTGGTCTTGGTG  180

Query  225  gaggaggcggtattggtggaggcagt-ggtcttggtggaggaggcggctttggtggagga  283
            ||||||||||| |||||||||| ||  |||||||||||||| |||||| |||||||||||
Sbjct  181  GAGGAGGCGGTCTTGGTGGAGG-AGGCGGTCTTGGTGGAGGTGGCGGCCTTGGTGGAGGA  239

Query  284  ggcggtcttggcggaggagctggaggcggtggcggtttaggaggaggagctggtggtgga  343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GGCGGTCTTGGCGGAGGAGCTGGAGGCGGTGGCGGTTTAGGAGGAGGAGCTGGTGGTGGA  299

Query  344  gctggaggaggatttggtggaggagctgggag-cggtggtggtcttggtgggggtggtgg  402
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  300  GCTGGAGGAGGATTTGGTGGAGGAGCTGG-AGGCGGTGGTGGTCTTGGTGGGGGTGGTGG  358

Query  403  tgctggtggaggatttggcggtggggctggtggtggttcaggtggagggtttggaggagg  462
            ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  359  TGCCGGTGGAGGATTTGGCGGTGGTGCTGGTGGTGGTTCAGGTGGAGGGTTTGGAGGAGG  418

Query  463  agctggtgctgggggtggactcggaggaggaggtggagctggtggcggtggtgggtttgg  522
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  419  AGCTGGTGCTGGGGGTGGACTCGGAGGAGGAGGTGGAGCTGGTGGTGGTGGTGGGTTTGG  478

Query  523  aggaggaggcggaagcggtattggtggtggtTTCGGTGGGGGAGCCGGTGCCGGAGGTGG  582
            ||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct  479  AGGAGGAGGTGGAAGTGGTATCGGTGGTGGATTCGGTGGTGGAGCCGGTGCTGGAGGTGG  538

Query  583  TTTCGGTGGTGGACATCATTGATGAGA  609
            |||||| ||||||||||||||||||||
Sbjct  539  TTTCGGCGGTGGACATCATTGATGAGA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29125908588


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5