BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20470.1 Length=789 Score E Sequences producing significant alignments: (Bits) Value Ahg479571 jgi|Araly1|479571|fgenesh2_kg.3__2272__AT3G20470.1 891 0.0 > Ahg479571 jgi|Araly1|479571|fgenesh2_kg.3__2272__AT3G20470.1 Length=565 Score = 891 bits (482), Expect = 0.0 Identities = 540/567 (95%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 49 ATCATCACATACGCAAAACACAAA-A---ATCGACATGGCTTCCAAGTCACTCTTTCTTG 104 |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1 ATCATCACATACACAAAACACAAAGATCGATCGACATGGCTTCCAAGTCACTCTTTCTTG 60 Query 105 TTGCCTTACTTGTCGGCTCTTTTGCTTTCACTTCATTTGCCAGTGTCGCTAACAGGAAGC 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGCCTTACTTGTCGGCTCTTTTGCTTTCACTTCATTTGCCAGTGTCGCTAACAGGAAGC 120 Query 165 TGAAGAGTGGTCTCGAGGACCAAAAGACATTCTTCCACCATCCAGGCGGAGGTCTCGgtg 224 | |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 121 TAAAGAGTGGTCTCGAGGACCAAAAGACTTTCTTCCACCATCCAGGCGGTGGTCTTGGTG 180 Query 225 gaggaggcggtattggtggaggcagt-ggtcttggtggaggaggcggctttggtggagga 283 ||||||||||| |||||||||| || |||||||||||||| |||||| ||||||||||| Sbjct 181 GAGGAGGCGGTCTTGGTGGAGG-AGGCGGTCTTGGTGGAGGTGGCGGCCTTGGTGGAGGA 239 Query 284 ggcggtcttggcggaggagctggaggcggtggcggtttaggaggaggagctggtggtgga 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GGCGGTCTTGGCGGAGGAGCTGGAGGCGGTGGCGGTTTAGGAGGAGGAGCTGGTGGTGGA 299 Query 344 gctggaggaggatttggtggaggagctgggag-cggtggtggtcttggtgggggtggtgg 402 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 300 GCTGGAGGAGGATTTGGTGGAGGAGCTGG-AGGCGGTGGTGGTCTTGGTGGGGGTGGTGG 358 Query 403 tgctggtggaggatttggcggtggggctggtggtggttcaggtggagggtttggaggagg 462 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 359 TGCCGGTGGAGGATTTGGCGGTGGTGCTGGTGGTGGTTCAGGTGGAGGGTTTGGAGGAGG 418 Query 463 agctggtgctgggggtggactcggaggaggaggtggagctggtggcggtggtgggtttgg 522 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 419 AGCTGGTGCTGGGGGTGGACTCGGAGGAGGAGGTGGAGCTGGTGGTGGTGGTGGGTTTGG 478 Query 523 aggaggaggcggaagcggtattggtggtggtTTCGGTGGGGGAGCCGGTGCCGGAGGTGG 582 ||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct 479 AGGAGGAGGTGGAAGTGGTATCGGTGGTGGATTCGGTGGTGGAGCCGGTGCTGGAGGTGG 538 Query 583 TTTCGGTGGTGGACATCATTGATGAGA 609 |||||| |||||||||||||||||||| Sbjct 539 TTTCGGCGGTGGACATCATTGATGAGA 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29125908588 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5