BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20475.1
Length=2719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479572 jgi|Araly1|479572|fgenesh2_kg.3__2273__AT3G20475.1 4130 0.0
Ahg929882 jgi|Araly1|929882|scaffold_302339.1 532 4e-150
Ahg929884 jgi|Araly1|929884|scaffold_302341.1 135 1e-30
> Ahg479572 jgi|Araly1|479572|fgenesh2_kg.3__2273__AT3G20475.1
Length=2554
Score = 4130 bits (2236), Expect = 0.0
Identities = 2450/2556 (96%), Gaps = 3/2556 (0%)
Strand=Plus/Plus
Query 26 TTCATCTTCCCCAACGACTCTGCTCCTTCCCCTTCTCTCCATCTCTCTCTCGTTCTAATC 85
|||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1 TTCATCTTCCCCAACGTCTCTGCT-CTTTCCCTTCTCTCTATCTCTCTCTCGTTCTAATC 59
Query 86 TTCGACAATGGAGGAAATGGAAGACACTGAAACCGAACCACAGGTTTACATGGCTTGTAT 145
| || |||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 60 TGCGGCAATGGAGGAAATGGAAGACGCAGAAACCGAACCACAGGTTTATATGGCTTGTAT 119
Query 146 TCAGCACGGTCGGAGAGTTGGAGTTTCTTACTACGACTGTAGTGTACGCCAGCTTCATGT 205
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAGCATGGTCGGAGAGTTGGAGTTTCTTACTACGACTGTAGTGTACGCCAGCTTCATGT 179
Query 206 GCTAGAATTTTGGGAAGAAGATTGCTCAGATTTTACATTGATCAATATGGTAAAATATCA 265
||||||| ||||||| |||||||||||||||||||| || || |||||||||||||||||
Sbjct 180 GCTAGAAGTTTGGGAGGAAGATTGCTCAGATTTTACCTTCATTAATATGGTAAAATATCA 239
Query 266 AGCGAAGCCATCGATCATTTACGCAAGCACGAAAAGTGAAGAATCCTTTGTAGCTGCTTT 325
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 240 AGCGAAGCCATCGATCATTTACACAAGCACCAAAAGTGAAGAATCCTTTGTAGCTGCTCT 299
Query 326 GCAGCAGAATGACGGAACTGACGAGACTACCATGGTAAAGCTGGTAAAGAGCTCAACATT 385
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 GCAGCAAAATGACGGAACTGACGAGACTACCATGGTGAAGCTGGTAAAGAGTTCAACATT 359
Query 386 CAGCTACGAGCAAGCGTGGCACAGACTGGTATATCTTCGAGTAACTGGAATGGATGATGG 445
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 360 CAGCTACGAGCAAGCGTGGCACAGACTGGTTTATCTTCGAGTAACAGGAATGGATTATGG 419
Query 446 ATTGAACATCAAAGAAAGGATTTGTTATCTGAGTTCCATGATGGATGTGGGCAGTGAAGT 505
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 420 GTTGAACATCAAAGAAAGGATTTGTTATCTGAGTTCCATCATGGATGTGGGTAGTGAAGT 479
Query 506 CCAAGTTCGTGTTAGTGGTGGTCTTCTTGCTATATTAGAAAGCGAACGAATTGTAGAAAC 565
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 480 CCAAGTTCGTGTTAGTGGGGGCCTTCTTGCTATATTAGAAAGTGAACGAATTGTAGAAAC 539
Query 566 CCTGGAACAAAACGAATCTGGGAGTGCATCAATCGCAATTGATTCAGTCATGGAAGTACC 625
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CCTGGAACAAAACGAATCTGGGAGTGCGTCAATCGCAATTGATTCAGTCATGGAAGTACC 599
Query 626 ATTGAACAAGTTTCTTAAACTTGATGCTGCTGCTCACGAGGCTCTGCAGATATTTCAGAC 685
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 600 ATTGAACAAGTTTCTTCATCTTGATGCGGCTGCTCACGAGGCTCTGCAGATATTTCAAAC 659
Query 686 AGATAAACATCCAAGCCATATGGGCATTGGCCGGGCCAAAGAAGGGTTCTCGGTATTTGG 745
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 660 AGATAAACATCCAGGCCATATGGGCATTAGCCGGGCAAAAGAAGGGTTCTCGGTGTTTGG 719
Query 746 AATGATGAATAAGTGTGCCACGCCAATGGGTAGACGCCTTTTAAGAAGCTGGTTTATGAG 805
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGATGAATAAGTGTGCCACACCAATGGGTAGACGCCTTTTAAGAAGCTGGTTTATGAG 779
Query 806 ACCAATTTTAGATCTTGAAGTGTTAGATCGCCGTCTCAATGCTATTTCCTTTTTCATTTC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACCAATTTTAGATCTTGAAGTGTTAGATCGCCGTCTCAATGCTATTTCCTTTTTCATTTC 839
Query 866 TTCAGTAGAGCTGATGGCATCATTGCGGGAGACACTGAAATCAGTGAAGGACATTTCACA 925
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 840 TTCAGTAGAGCTGATGGCATCATTGCGGGAGACACTGAAATCTGTGAAGGACATTTCGCA 899
Query 926 TCTACTCAAGAAATTCAACTCTCCGACGTCCCTCTGTACCAGTAACGACTGGACAGCTTT 985
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCTGCTCAAGAAATTCAACTCTCCGACGTCCCTCTGTACCAGTAACGACTGGACAGCTTT 959
Query 986 CTTGAAGAGCATAAGTGCGCTCCTGCACGTGAATAAGATATTTGAAGTTGGAGTTTCAGA 1045
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTGAAGAGTATAAGTGCGCTCCTGCACGTGAATAAGATATTTGAAGTTGGAGTTTCAGA 1019
Query 1046 AAGTCTCAGAGAGCATATGAGACGCTTCAACTTGGACATTATTGAGAAGGCCGGCTTATG 1105
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGTCTCAGAGAACATATGAGACGCTTCAACTTGGACATTATTGAGAAGGCCGGCTTATG 1079
Query 1106 TATCAGCACAGAGCTAGATTATGTCTATGAACTGGTCATTGGAGTCATTGATGTTACTAG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TATCAGCACAGAGCTAGATTATGTCTATGAACTGGTCATTGGAGTCATTGATGTTACTAG 1139
Query 1166 AAGCAAAGAGAGGGGATATCAAACTTTGGTTAAAGAAGGATTCTGTGCTGAGTTGGATGA 1225
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1140 AAGCAAAGAGAGGGGATATCAAACATTGGTGAAAGAAGGATTCTGTGCTGAGTTGGATGA 1199
Query 1226 GCTCAGGCAAATATATGAGGAGTTGCCAGAATTTCTGCAGGAGGTTTCAGCGATGGAGTT 1285
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 GCTGAGGCAAATATACGAGGAGTTGCCAGAGTTTCTGCAGGAGGTTTCAGCGATGGAGTT 1259
Query 1286 AGAACACTTTCCTCATTTGCATAAGGAAAAGCTTCCTCCTTGTATCGTCTATATTCAACA 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGAACACTTTCCTCATTTGCATAAGGAAAAGCTTCCTCCTTGTATCGTCTATATTCAACA 1319
Query 1346 AATTGGGTACCTCATGTGTATCTTTGGAGAAAAGCTTGATGAAACTGCTCTTAATAGGCT 1405
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1320 AATTGGGTACCTCATGTGCATCTTTGGAGAAAAGCTTGATGAAACTGCACTTAATAGGCT 1379
Query 1406 TACTGAATTTGAATTTGCGTTTTCTGATATGGATGGAGAGACTCAGCGATTCTTTTACCA 1465
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1380 TACTGAATTTGAATTTGCGTTTTCCAATATGGATGGAGAGACTCAGCGATTCTTTTACCA 1439
Query 1466 TACCTCGAAGACACGAGAGTTAGACAACCTTCTTGGAGATATCTACCACAAAATTTTAGA 1525
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TACCCCGAAGACACGAGAGTTAGACAACCTTCTTGGAGATATCTACCACAAAATTTTAGA 1499
Query 1526 TATGGAAAGGGCAATTATTAGGGACTTGCTGTCACACACACTTTTGTTCTCGGCTCACCT 1585
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1500 TATGGAAAGGGCAATTATTAGGGACTTGCTATCACACACGCTTTTGTTCTCGGCTCACCT 1559
Query 1586 GCTGAAGGCAGTTAACTTTGTTGCAGAACTTGATTGCATTTTATCGTTGGCTTGTGTAGC 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCTGAAGGCAGTTAACTTTGTTGCAGAACTTGATTGCATTTTATCGTTGGCTTGTGTAGC 1619
Query 1646 CCATCAGAATAACTACGTAAGGCCTGTCCTGACAGTAGAATCATTGCTTGATATTCGAAA 1705
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1620 CCATCAGAACAACTACGTAAGGCCTGTCCTGACAATAGAATCATTGCTTGATATTCGAAA 1679
Query 1706 TGGAAGGCATGTTTTGCAGGAAATGGCTGTAGATACTTTTATCCCAAACGACACTGAAAT 1765
|||||||||| | ||||||||||||||||| ||||| |||||||| | ||||||||||||
Sbjct 1680 TGGAAGGCATATATTGCAGGAAATGGCTGTGGATACATTTATCCCGAGCGACACTGAAAT 1739
Query 1766 CAATGATAATGGACGAATTCATATAATTACCGGGCCTAATTACTCAGGAAAGAGCATATA 1825
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CAATGATAATGGCCGAATTCATATAATTACCGGGCCTAATTACTCAGGAAAGAGCATATA 1799
Query 1826 TGTAAAGCAGGTGGCGTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGA 1885
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TGTAAAGCAGGTGGCTTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGA 1859
Query 1886 TGCAGCAACTGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGAC 1945
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TGCAACAACTGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGAC 1919
Query 1946 CGCGGAGCAATCTACATTCATGATAGATCTGCATCAAGTAGGAATGATGCTCAGGCAGGC 2005
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1920 CGCGGAGCAATCTACATTTATGATAGATCTGCATCAAGTAGGAATGATGCTCAGACAGGC 1979
Query 2006 AACTTCAAGATCTCTGTGTCTCTTAGACGAGTTTGGTAAAGGCACTCTTACAGAAGATGG 2065
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1980 AACTTCAAGATCTCTGTGTCTCGTAGACGAGTTTGGTAAAGGCACTCTTACAGAAGATGG 2039
Query 2066 TATTGGCTTGCTTGGTGGGACAATTAGTCACTTTGCTACATGTGCTGAGCCACCAAGGGT 2125
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2040 TATTGGCTTGCTTGGTGGGACAATTAGCCACTTTGCTACATGTACTGAGCCACCAAGGGT 2099
Query 2126 TGTAGTATGTACGCACTTGACTGAGCTACTTAACGAGAGCTGCTTGCCTGTTTCTGAGAA 2185
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2100 TCTAGTGTGTACGCACTTGACTGAACTACTTAACGAGAGCTGCTTGCCTGTTTCTGAGAA 2159
Query 2186 GATTAAGTTCTACACAATGAGCGTTCTTAGGCCAGACACAGAATCTGCAAACATGGAAGA 2245
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2160 GATTAAATTCTATACAATGAGCGTTCTTAGGCCAGACACAGAATCTGCAAAAATGGAAGA 2219
Query 2246 GATTGTTTTTCTTTATAGGTTAATTCCGGGACAAACTTTGCTGAGCTATGGCCTTCA-CT 2304
||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||
Sbjct 2220 AATTGTTTTTCTTTATCGGTTAATTCCGGGACAAACTTTACTGAGCTATGGTGAGCATCT 2279
Query 2305 GTGCGCTACTCGCTGGTGTCCCGGAGGAAGTCGTGAAGAGAGCAGCCATCGTGTTGGACG 2364
|| | | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 TTGTGTTTG-CGTTGGTGTCCCGGAGGAAGTCGTGAAGAGAGCAGCCATCGTGTTGGACG 2338
Query 2365 CCTTTGAGAGTAACAACAACGTCGATAAACTAAGCCTTGACAAAATATCGTCTCAAGATC 2424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 CCTTTGAGAGTAACAACAACGTCGATAAACTAAGCCTTGACAAAATATCGTCTCAAGATC 2398
Query 2425 AAGCATTCAAGGATGCTGTTGACAAGTTTGCGGAGCTTGACATCAGTAAAGGTGACATCC 2484
||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 2399 AAGCATTCAAGGATGCTGTTGACAAGTTTATGGAGTTTGACATCGGTAAAGGTGACATCC 2458
Query 2485 ATGCCTTCTTTCAAGATATCTTCACTTCCTAAACCCTTACTTAAAAGTCAAGATCACCGT 2544
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2459 GTGGCTTCTTTCAAGATATCTTCACTTCCTAAACCCTCACTTAAAAGTCAAGATCACCGA 2518
Query 2545 ATACAAAATGTAACCAACGACAGTAGATTTTTAAAA 2580
||| |||||||||||||| ||||||||||||| |||
Sbjct 2519 ATAGAAAATGTAACCAACAACAGTAGATTTTTTAAA 2554
> Ahg929882 jgi|Araly1|929882|scaffold_302339.1
Length=627
Score = 532 bits (288), Expect = 4e-150
Identities = 319/334 (96%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 1020 AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCAGAGAGCATATGAGACGCTTCAACTTG 1079
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 33 AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCGGAGAGCATATGAGACGCTTCAACTTG 92
Query 1080 GACATTATTGAGAAGGCCGGCTTATGTATCAGCACAGAGCTAGATTATGTCTATGAACTG 1139
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 93 GACATTATTGAAAAGGCCGGCTTATGTATCAGCACAGAGCTAGACTATGTATATGAACTG 152
Query 1140 GTCATTGGAGTCATTGATGTTACTAGAAGCAAAGAGAGGGGATATCAAACTTTGGTTAAA 1199
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 153 GTCATTGGAGTCATTGATGTAACTAGAAGCAAAGAGAGGGGATATCAAACATTGGTGAAA 212
Query 1200 GAAGGATTCTGTGCTGAGTTGGATGAGCTCAGGCAAATATATGAGGAGTTGCCAGAATTT 1259
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 213 GAAGGGTTCTGTGCTGAGTTGGATGAGCTGAGGCAAATATACGAGGAGTTGCCAGAGTTT 272
Query 1260 CTGCAGGAGGTTTCAGCGATGGAGTTAGAACACTTTCCTCATTTGCATAAGGAAAAGCTT 1319
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 273 CTGCAGGAGGTTTCAGCGAAGGAGTTAGAACACTTTCCTCATTCGCATAAGGAAAAGCTT 332
Query 1320 CCTCCTTGTATCGTCTATAT-T-CAACAAATTGG 1351
|||||||||||||||||||| | |||||||||||
Sbjct 333 CCTCCTTGTATCGTCTATATATTCAACAAATTGG 366
Score = 217 bits (117), Expect = 4e-55
Identities = 194/227 (85%), Gaps = 21/227 (9%)
Strand=Plus/Plus
Query 1835 GGTGGCGTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAGCAAC 1894
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 365 GGTGGCTTTACTTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAACAAC 424
Query 1895 TGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGACCGCGGAGCA 1954
| ||||||||||| || | |||||||||||||| ||||||||
Sbjct 425 TATTGGTTTAACT-----GA---------C-------AGCAAGTTCATGACTGCGGAGCA 463
Query 1955 ATCTACATTCATGATAGATCTGCATCAAGTAGGAATGATGCTCAGGCAGGCAACTTCAAG 2014
||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 464 ATCTACATTTATGAAAGATCTGCATCAGGGAGGAATGATGCTCAGGCAGGCAACTTCAAG 523
Query 2015 ATCTCTGTGTCTCTTAGACGAGTTTGGTAAAGGCACTCTTACAGAAG 2061
|||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 524 ATCTGTGTGTCTATTAGACGAGTTTGGTAAAGGCACTCTAACAGAAG 570
> Ahg929884 jgi|Araly1|929884|scaffold_302341.1
Length=356
Score = 135 bits (73), Expect = 1e-30
Identities = 87/93 (94%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 1622 CATTTTATCGTTGGCTTGTGTAGCCCATCAGAATAACTACGTAAGGCCTGTCCTGACAGT 1681
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 191 CATTTTATCGTTGGCTGGTGTATCCCATCAGAATAACTACGTAAGGCCTGTCCTGACAAT 250
Query 1682 AGAATCATTGCTTGATA-TTCGAAA-TGGAAGG 1712
|||||||||||||| || ||||||| |||||||
Sbjct 251 AGAATCATTGCTTG-TAATTCGAAAATGGAAGG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102577029785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5