BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20475.1 Length=2719 Score E Sequences producing significant alignments: (Bits) Value Ahg479572 jgi|Araly1|479572|fgenesh2_kg.3__2273__AT3G20475.1 4130 0.0 Ahg929882 jgi|Araly1|929882|scaffold_302339.1 532 4e-150 Ahg929884 jgi|Araly1|929884|scaffold_302341.1 135 1e-30 > Ahg479572 jgi|Araly1|479572|fgenesh2_kg.3__2273__AT3G20475.1 Length=2554 Score = 4130 bits (2236), Expect = 0.0 Identities = 2450/2556 (96%), Gaps = 3/2556 (0%) Strand=Plus/Plus Query 26 TTCATCTTCCCCAACGACTCTGCTCCTTCCCCTTCTCTCCATCTCTCTCTCGTTCTAATC 85 |||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||| Sbjct 1 TTCATCTTCCCCAACGTCTCTGCT-CTTTCCCTTCTCTCTATCTCTCTCTCGTTCTAATC 59 Query 86 TTCGACAATGGAGGAAATGGAAGACACTGAAACCGAACCACAGGTTTACATGGCTTGTAT 145 | || |||||||||||||||||||| | |||||||||||||||||||| ||||||||||| Sbjct 60 TGCGGCAATGGAGGAAATGGAAGACGCAGAAACCGAACCACAGGTTTATATGGCTTGTAT 119 Query 146 TCAGCACGGTCGGAGAGTTGGAGTTTCTTACTACGACTGTAGTGTACGCCAGCTTCATGT 205 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCAGCATGGTCGGAGAGTTGGAGTTTCTTACTACGACTGTAGTGTACGCCAGCTTCATGT 179 Query 206 GCTAGAATTTTGGGAAGAAGATTGCTCAGATTTTACATTGATCAATATGGTAAAATATCA 265 ||||||| ||||||| |||||||||||||||||||| || || ||||||||||||||||| Sbjct 180 GCTAGAAGTTTGGGAGGAAGATTGCTCAGATTTTACCTTCATTAATATGGTAAAATATCA 239 Query 266 AGCGAAGCCATCGATCATTTACGCAAGCACGAAAAGTGAAGAATCCTTTGTAGCTGCTTT 325 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | Sbjct 240 AGCGAAGCCATCGATCATTTACACAAGCACCAAAAGTGAAGAATCCTTTGTAGCTGCTCT 299 Query 326 GCAGCAGAATGACGGAACTGACGAGACTACCATGGTAAAGCTGGTAAAGAGCTCAACATT 385 |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 300 GCAGCAAAATGACGGAACTGACGAGACTACCATGGTGAAGCTGGTAAAGAGTTCAACATT 359 Query 386 CAGCTACGAGCAAGCGTGGCACAGACTGGTATATCTTCGAGTAACTGGAATGGATGATGG 445 |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| Sbjct 360 CAGCTACGAGCAAGCGTGGCACAGACTGGTTTATCTTCGAGTAACAGGAATGGATTATGG 419 Query 446 ATTGAACATCAAAGAAAGGATTTGTTATCTGAGTTCCATGATGGATGTGGGCAGTGAAGT 505 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 420 GTTGAACATCAAAGAAAGGATTTGTTATCTGAGTTCCATCATGGATGTGGGTAGTGAAGT 479 Query 506 CCAAGTTCGTGTTAGTGGTGGTCTTCTTGCTATATTAGAAAGCGAACGAATTGTAGAAAC 565 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 480 CCAAGTTCGTGTTAGTGGGGGCCTTCTTGCTATATTAGAAAGTGAACGAATTGTAGAAAC 539 Query 566 CCTGGAACAAAACGAATCTGGGAGTGCATCAATCGCAATTGATTCAGTCATGGAAGTACC 625 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 540 CCTGGAACAAAACGAATCTGGGAGTGCGTCAATCGCAATTGATTCAGTCATGGAAGTACC 599 Query 626 ATTGAACAAGTTTCTTAAACTTGATGCTGCTGCTCACGAGGCTCTGCAGATATTTCAGAC 685 |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| || Sbjct 600 ATTGAACAAGTTTCTTCATCTTGATGCGGCTGCTCACGAGGCTCTGCAGATATTTCAAAC 659 Query 686 AGATAAACATCCAAGCCATATGGGCATTGGCCGGGCCAAAGAAGGGTTCTCGGTATTTGG 745 ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||| Sbjct 660 AGATAAACATCCAGGCCATATGGGCATTAGCCGGGCAAAAGAAGGGTTCTCGGTGTTTGG 719 Query 746 AATGATGAATAAGTGTGCCACGCCAATGGGTAGACGCCTTTTAAGAAGCTGGTTTATGAG 805 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 720 AATGATGAATAAGTGTGCCACACCAATGGGTAGACGCCTTTTAAGAAGCTGGTTTATGAG 779 Query 806 ACCAATTTTAGATCTTGAAGTGTTAGATCGCCGTCTCAATGCTATTTCCTTTTTCATTTC 865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ACCAATTTTAGATCTTGAAGTGTTAGATCGCCGTCTCAATGCTATTTCCTTTTTCATTTC 839 Query 866 TTCAGTAGAGCTGATGGCATCATTGCGGGAGACACTGAAATCAGTGAAGGACATTTCACA 925 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 840 TTCAGTAGAGCTGATGGCATCATTGCGGGAGACACTGAAATCTGTGAAGGACATTTCGCA 899 Query 926 TCTACTCAAGAAATTCAACTCTCCGACGTCCCTCTGTACCAGTAACGACTGGACAGCTTT 985 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TCTGCTCAAGAAATTCAACTCTCCGACGTCCCTCTGTACCAGTAACGACTGGACAGCTTT 959 Query 986 CTTGAAGAGCATAAGTGCGCTCCTGCACGTGAATAAGATATTTGAAGTTGGAGTTTCAGA 1045 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TTTGAAGAGTATAAGTGCGCTCCTGCACGTGAATAAGATATTTGAAGTTGGAGTTTCAGA 1019 Query 1046 AAGTCTCAGAGAGCATATGAGACGCTTCAACTTGGACATTATTGAGAAGGCCGGCTTATG 1105 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AAGTCTCAGAGAACATATGAGACGCTTCAACTTGGACATTATTGAGAAGGCCGGCTTATG 1079 Query 1106 TATCAGCACAGAGCTAGATTATGTCTATGAACTGGTCATTGGAGTCATTGATGTTACTAG 1165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TATCAGCACAGAGCTAGATTATGTCTATGAACTGGTCATTGGAGTCATTGATGTTACTAG 1139 Query 1166 AAGCAAAGAGAGGGGATATCAAACTTTGGTTAAAGAAGGATTCTGTGCTGAGTTGGATGA 1225 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1140 AAGCAAAGAGAGGGGATATCAAACATTGGTGAAAGAAGGATTCTGTGCTGAGTTGGATGA 1199 Query 1226 GCTCAGGCAAATATATGAGGAGTTGCCAGAATTTCTGCAGGAGGTTTCAGCGATGGAGTT 1285 ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1200 GCTGAGGCAAATATACGAGGAGTTGCCAGAGTTTCTGCAGGAGGTTTCAGCGATGGAGTT 1259 Query 1286 AGAACACTTTCCTCATTTGCATAAGGAAAAGCTTCCTCCTTGTATCGTCTATATTCAACA 1345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AGAACACTTTCCTCATTTGCATAAGGAAAAGCTTCCTCCTTGTATCGTCTATATTCAACA 1319 Query 1346 AATTGGGTACCTCATGTGTATCTTTGGAGAAAAGCTTGATGAAACTGCTCTTAATAGGCT 1405 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1320 AATTGGGTACCTCATGTGCATCTTTGGAGAAAAGCTTGATGAAACTGCACTTAATAGGCT 1379 Query 1406 TACTGAATTTGAATTTGCGTTTTCTGATATGGATGGAGAGACTCAGCGATTCTTTTACCA 1465 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1380 TACTGAATTTGAATTTGCGTTTTCCAATATGGATGGAGAGACTCAGCGATTCTTTTACCA 1439 Query 1466 TACCTCGAAGACACGAGAGTTAGACAACCTTCTTGGAGATATCTACCACAAAATTTTAGA 1525 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 TACCCCGAAGACACGAGAGTTAGACAACCTTCTTGGAGATATCTACCACAAAATTTTAGA 1499 Query 1526 TATGGAAAGGGCAATTATTAGGGACTTGCTGTCACACACACTTTTGTTCTCGGCTCACCT 1585 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1500 TATGGAAAGGGCAATTATTAGGGACTTGCTATCACACACGCTTTTGTTCTCGGCTCACCT 1559 Query 1586 GCTGAAGGCAGTTAACTTTGTTGCAGAACTTGATTGCATTTTATCGTTGGCTTGTGTAGC 1645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 GCTGAAGGCAGTTAACTTTGTTGCAGAACTTGATTGCATTTTATCGTTGGCTTGTGTAGC 1619 Query 1646 CCATCAGAATAACTACGTAAGGCCTGTCCTGACAGTAGAATCATTGCTTGATATTCGAAA 1705 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1620 CCATCAGAACAACTACGTAAGGCCTGTCCTGACAATAGAATCATTGCTTGATATTCGAAA 1679 Query 1706 TGGAAGGCATGTTTTGCAGGAAATGGCTGTAGATACTTTTATCCCAAACGACACTGAAAT 1765 |||||||||| | ||||||||||||||||| ||||| |||||||| | |||||||||||| Sbjct 1680 TGGAAGGCATATATTGCAGGAAATGGCTGTGGATACATTTATCCCGAGCGACACTGAAAT 1739 Query 1766 CAATGATAATGGACGAATTCATATAATTACCGGGCCTAATTACTCAGGAAAGAGCATATA 1825 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 CAATGATAATGGCCGAATTCATATAATTACCGGGCCTAATTACTCAGGAAAGAGCATATA 1799 Query 1826 TGTAAAGCAGGTGGCGTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGA 1885 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 TGTAAAGCAGGTGGCTTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGA 1859 Query 1886 TGCAGCAACTGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGAC 1945 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1860 TGCAACAACTGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGAC 1919 Query 1946 CGCGGAGCAATCTACATTCATGATAGATCTGCATCAAGTAGGAATGATGCTCAGGCAGGC 2005 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1920 CGCGGAGCAATCTACATTTATGATAGATCTGCATCAAGTAGGAATGATGCTCAGACAGGC 1979 Query 2006 AACTTCAAGATCTCTGTGTCTCTTAGACGAGTTTGGTAAAGGCACTCTTACAGAAGATGG 2065 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1980 AACTTCAAGATCTCTGTGTCTCGTAGACGAGTTTGGTAAAGGCACTCTTACAGAAGATGG 2039 Query 2066 TATTGGCTTGCTTGGTGGGACAATTAGTCACTTTGCTACATGTGCTGAGCCACCAAGGGT 2125 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 2040 TATTGGCTTGCTTGGTGGGACAATTAGCCACTTTGCTACATGTACTGAGCCACCAAGGGT 2099 Query 2126 TGTAGTATGTACGCACTTGACTGAGCTACTTAACGAGAGCTGCTTGCCTGTTTCTGAGAA 2185 | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2100 TCTAGTGTGTACGCACTTGACTGAACTACTTAACGAGAGCTGCTTGCCTGTTTCTGAGAA 2159 Query 2186 GATTAAGTTCTACACAATGAGCGTTCTTAGGCCAGACACAGAATCTGCAAACATGGAAGA 2245 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2160 GATTAAATTCTATACAATGAGCGTTCTTAGGCCAGACACAGAATCTGCAAAAATGGAAGA 2219 Query 2246 GATTGTTTTTCTTTATAGGTTAATTCCGGGACAAACTTTGCTGAGCTATGGCCTTCA-CT 2304 ||||||||||||||| |||||||||||||||||||||| ||||||||||| || || Sbjct 2220 AATTGTTTTTCTTTATCGGTTAATTCCGGGACAAACTTTACTGAGCTATGGTGAGCATCT 2279 Query 2305 GTGCGCTACTCGCTGGTGTCCCGGAGGAAGTCGTGAAGAGAGCAGCCATCGTGTTGGACG 2364 || | | || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2280 TTGTGTTTG-CGTTGGTGTCCCGGAGGAAGTCGTGAAGAGAGCAGCCATCGTGTTGGACG 2338 Query 2365 CCTTTGAGAGTAACAACAACGTCGATAAACTAAGCCTTGACAAAATATCGTCTCAAGATC 2424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2339 CCTTTGAGAGTAACAACAACGTCGATAAACTAAGCCTTGACAAAATATCGTCTCAAGATC 2398 Query 2425 AAGCATTCAAGGATGCTGTTGACAAGTTTGCGGAGCTTGACATCAGTAAAGGTGACATCC 2484 ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| Sbjct 2399 AAGCATTCAAGGATGCTGTTGACAAGTTTATGGAGTTTGACATCGGTAAAGGTGACATCC 2458 Query 2485 ATGCCTTCTTTCAAGATATCTTCACTTCCTAAACCCTTACTTAAAAGTCAAGATCACCGT 2544 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2459 GTGGCTTCTTTCAAGATATCTTCACTTCCTAAACCCTCACTTAAAAGTCAAGATCACCGA 2518 Query 2545 ATACAAAATGTAACCAACGACAGTAGATTTTTAAAA 2580 ||| |||||||||||||| ||||||||||||| ||| Sbjct 2519 ATAGAAAATGTAACCAACAACAGTAGATTTTTTAAA 2554 > Ahg929882 jgi|Araly1|929882|scaffold_302339.1 Length=627 Score = 532 bits (288), Expect = 4e-150 Identities = 319/334 (96%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 1020 AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCAGAGAGCATATGAGACGCTTCAACTTG 1079 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 33 AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCGGAGAGCATATGAGACGCTTCAACTTG 92 Query 1080 GACATTATTGAGAAGGCCGGCTTATGTATCAGCACAGAGCTAGATTATGTCTATGAACTG 1139 ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 93 GACATTATTGAAAAGGCCGGCTTATGTATCAGCACAGAGCTAGACTATGTATATGAACTG 152 Query 1140 GTCATTGGAGTCATTGATGTTACTAGAAGCAAAGAGAGGGGATATCAAACTTTGGTTAAA 1199 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 153 GTCATTGGAGTCATTGATGTAACTAGAAGCAAAGAGAGGGGATATCAAACATTGGTGAAA 212 Query 1200 GAAGGATTCTGTGCTGAGTTGGATGAGCTCAGGCAAATATATGAGGAGTTGCCAGAATTT 1259 ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 213 GAAGGGTTCTGTGCTGAGTTGGATGAGCTGAGGCAAATATACGAGGAGTTGCCAGAGTTT 272 Query 1260 CTGCAGGAGGTTTCAGCGATGGAGTTAGAACACTTTCCTCATTTGCATAAGGAAAAGCTT 1319 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 273 CTGCAGGAGGTTTCAGCGAAGGAGTTAGAACACTTTCCTCATTCGCATAAGGAAAAGCTT 332 Query 1320 CCTCCTTGTATCGTCTATAT-T-CAACAAATTGG 1351 |||||||||||||||||||| | ||||||||||| Sbjct 333 CCTCCTTGTATCGTCTATATATTCAACAAATTGG 366 Score = 217 bits (117), Expect = 4e-55 Identities = 194/227 (85%), Gaps = 21/227 (9%) Strand=Plus/Plus Query 1835 GGTGGCGTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAGCAAC 1894 |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 365 GGTGGCTTTACTTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAACAAC 424 Query 1895 TGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGACCGCGGAGCA 1954 | ||||||||||| || | |||||||||||||| |||||||| Sbjct 425 TATTGGTTTAACT-----GA---------C-------AGCAAGTTCATGACTGCGGAGCA 463 Query 1955 ATCTACATTCATGATAGATCTGCATCAAGTAGGAATGATGCTCAGGCAGGCAACTTCAAG 2014 ||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||| Sbjct 464 ATCTACATTTATGAAAGATCTGCATCAGGGAGGAATGATGCTCAGGCAGGCAACTTCAAG 523 Query 2015 ATCTCTGTGTCTCTTAGACGAGTTTGGTAAAGGCACTCTTACAGAAG 2061 |||| ||||||| |||||||||||||||||||||||||| ||||||| Sbjct 524 ATCTGTGTGTCTATTAGACGAGTTTGGTAAAGGCACTCTAACAGAAG 570 > Ahg929884 jgi|Araly1|929884|scaffold_302341.1 Length=356 Score = 135 bits (73), Expect = 1e-30 Identities = 87/93 (94%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 1622 CATTTTATCGTTGGCTTGTGTAGCCCATCAGAATAACTACGTAAGGCCTGTCCTGACAGT 1681 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 191 CATTTTATCGTTGGCTGGTGTATCCCATCAGAATAACTACGTAAGGCCTGTCCTGACAAT 250 Query 1682 AGAATCATTGCTTGATA-TTCGAAA-TGGAAGG 1712 |||||||||||||| || ||||||| ||||||| Sbjct 251 AGAATCATTGCTTG-TAATTCGAAAATGGAAGG 282 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102577029785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5