BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20480.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479573 jgi|Araly1|479573|fgenesh2_kg.3__2274__AT3G20480.1 1881 0.0
> Ahg479573 jgi|Araly1|479573|fgenesh2_kg.3__2274__AT3G20480.1
Length=1261
Score = 1881 bits (1018), Expect = 0.0
Identities = 1181/1262 (94%), Gaps = 2/1262 (0%)
Strand=Plus/Plus
Query 24 ATGGAGAAGCTGAGGAAGGTGGTGAACGAAATCGCCTACACGCGAGTCCATACGAATTCC 83
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGGAGAAGCTGAGGAAGGTGGTGAACGAAATCGCCTACACGCGAGTCCATACTACTTCC 60
Query 84 CCTGCTCTTCACCGTTCTCTCGTTCCCTTCCTAACAATCGCTTCGTCTCTATACGGAGTC 143
||||| ||||| || |||||||||||| |||| ||| ||||||| ||||||||| | |
Sbjct 61 CCTGCACTTCATCGCTCTCTCGTTCCCATCCTCACACTCGCTTCTTCTCTATACTCCGGC 120
Query 144 GCTCTCCAAATCCGCCGCTCTCTCTACCGCTACTCACTCTTACAGAAACACCGATTACCC 203
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 121 GCTCTCCAAATCCGCCGCTCTCTCTACCGCTTCTCACTCTTGCAGAAAGACCGATTACCG 180
Query 204 GTTCCGGTGATCAGCGTTGGGAATCTGAGCTGGGGAGGTAATGGGAAGACGCCAATGGTG 263
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTTCCGGTGATCAGCGTTGGGAATCTGAGCTGGGGAGGTAACGGGAAGACGCCAATGGTG 240
Query 264 GAATACATTTCTCAATTCCTCGTTGATTCTGGACTTACACCTCTTATTCTCACTCGTGGT 323
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 241 GAATACATTTCTCAATTCCTCGTTGATTCTGGAATTTCACCTCTTATTCTCACTCGTGGT 300
Query 324 TATGCTGGTGGAGATGAAGTCAAAATGCTTGAAAGACATCTTCGTGGTGGACCGGTAAAG 383
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TATGCTGGTGGAGATGAAGCCAAAATGCTTGCAAGACATCTTCGTGGTGGACCGGTAAAG 360
Query 384 ATTGGCGTTGGGGCTAACCGGGCAGCTACTGCTGCTTTGTTTTTGGATAAGTATGGTTGT 443
||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ATTGGTGTTGGTGCAAACCGGGCAGCTACTGCTGCTTTGTTTTTGGAAAAGTATGGTTGT 420
Query 444 GTAGATTCTTCTAGTTTAAGGTCATTCTTTGATCTTCATGAAAGAGCACAAGTTTGGACC 503
|||||| |||||| ||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 421 GTAGATCCTTCTACTTTAAGGACATTCTTTGATCTTCATGAAAGAGCAGAAGCCAGGACC 480
Query 504 ATTTCTGAAAAAATTGGTTGTATCATAT-TAGATGATGGGATGCAGCATTGGAGTTTGTC 562
|||||| |||||||||||| |||||| | ||||||||||||||||||||| |||||||||
Sbjct 481 ATTTCTCAAAAAATTGGTTCTATCAT-TCTAGATGATGGGATGCAGCATTTGAGTTTGTC 539
Query 563 TCGTGATCTCGAGATTGTGATGCTTAACGGGCTGAATCCATGGGGAAATGGTCATTTGAT 622
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 540 TCGTGATCTAGAGATTGTGATGCTTAACGGGCTGAATCCGTGGGGAAATGGTCATTTGGT 599
Query 623 GCCTCATGGTCCTTTACGAGAACCTCTTCTGGCGCTTGAACGGGCAGATGTTGCTGTAGT 682
|| | |||||||||||||||| ||||| |||||||||| |||| |||| ||||||||||
Sbjct 600 TCCCCTTGGTCCTTTACGAGAATCTCTTGTGGCGCTTGAGCGGGTAGATATTGCTGTAGT 659
Query 683 ACACCATGTGGACTTGATTACTAAACAAAGCCTCAGAGATATTGAGAACATGATACAAGG 742
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 660 ACACCACGTGGACTTGATTACTAAACAAAGTCTCAGAGATATTGAGAACATGATACAAAG 719
Query 743 ATTCAAAAAGTCGATACCGATTTTCTACTCCAAGATGGTGCCCAAATACTTGTTCGATGT 802
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 ATTCAAAAAGTCGATCCCGATTTTCTACTCCAAGATGGTGCCAAAATACTTGTTCGATGT 779
Query 803 TAAAAATGCTAGGTCACATGTAGCTTTAGAAGCGTTGCGCTGTGCCTCTGTGCTATGTGT 862
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 TAAAAATGCTAGGTCACATGTAGCTTTAGAAGCATTGCGCTGTGCCTCTGTGCTATGTGT 839
Query 863 TTCCGCAATTGGATCCGCTGATGCATTTGTCAAGAGCATCGAGATGACTGGAGCACATTA 922
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TTCCGCAATTGGATCTGCTGACGCATTCGTCAAGAGCATCGAGATGACTGGAGCACATTA 899
Query 923 TGTTGATAGACTTGATTTCAGTGATCATCATTTATTTGAAGCAGAGGATGTTGAAACTAT 982
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 900 TGTTGATAGACTTGATTTCAGTGATCATCATTTGTTTGAAGCACAGGATGTCGAAACTAT 959
Query 983 GAGTAGGAGAGCAAAGGGACTAGAACACAAATCTAATTGCAAGCCTATCATTGTGGTAAC 1042
||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 960 GAGGAGGAGAGCAAATGGACTAGAGCACAAATCTAATTCCAAGCCTATCATTGTGGTAAC 1019
Query 1043 TGAAAAGGATTATGATAGAGACCCGGAGATCCTCAAATGTCTGGACTCATACACAGTCTT 1102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAAAAGGATTATGATAGAGACCCCGAGATCCTCAAATGTCTGGACTCATACACAGTCTT 1079
Query 1103 GGTTCTATGCTCTGAGTTGCAAATAACTCCTATTTTGGAAACTGATGTAGATAGCTTTAA 1162
|| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1080 AGTGCTATGCTCTGAGTTGCAAATAACTCCTATTAGGGGAACTGATGTGGATAGCTTTAA 1139
Query 1163 TTATACACTTATGAAAGCTCTAGCTGCTAAGTTCTATGTTTCCAGTTAGATTCAAGGTTA 1222
|| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1140 TTCTACACTTATGAGAGCTCTAGCTGCTAAGTTTTATGTTTACAGTTAGATTCAAGGTTA 1199
Query 1223 TCTTTTTGCATTTTGTTATTGTTTTATTACTCTTAGGAATATGATGATGCATTTATATTA 1282
| || ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 1200 TATTATTGCATTTTGTTATTGTTTTATTACTCTTAGGAATTTGATGATGTATTTATTTTA 1259
Query 1283 TT 1284
||
Sbjct 1260 TT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5