BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20490.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905059 jgi|Araly1|905059|Al_scaffold_0003_2187 1701 0.0
Ahg918621 jgi|Araly1|918621|Al_scaffold_0350_1 130 4e-29
> Ahg905059 jgi|Araly1|905059|Al_scaffold_0003_2187
Length=1449
Score = 1701 bits (921), Expect = 0.0
Identities = 1013/1058 (96%), Gaps = 4/1058 (0%)
Strand=Plus/Plus
Query 476 GCACCGGCCTCAACAAGAAGTCATTTTTCTAGTTGCAGCTCAAGGGTGCCACTTCATGGT 535
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GCACCTGCCTCAGCGAGAAGTCATTTTTCTAGTTGCAGCTCAAGGGTGCCACTTCATGGT 453
Query 536 TCTGGGGTTTTATCTAATCAACCTTCTATCTCTCGGGGAAAAAGAAAGCAGTCGGATGTT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TCTGGGGTTTTATCTAATCAACCTTCTATCTCTCGGGGAAAAAGAAAGCAGTCGGATGTT 513
Query 596 CAAGCATCTGCTGCCTCTGGGATTAGTTCTGTTGCATCGTTGTTTCAGATGTCAAGTCGT 655
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 514 CAAGCATCTGCTGCCTCTGGGATTAGTTCTGTTGCATCATTGTTTCAGAGGTCAAGTCGT 573
Query 656 AGTCCTCTACGAAGGTTCCAGCTACTAGATTCAGATTCTGAAGATGACCATCCATCCACC 715
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 574 AGTCCTCTGCGAAGGTTCCAGCTACTAGATTCAGATTCTGAAGATGACCTTCCATCCACC 633
Query 716 AGCAGAGATTTAAGCGGAGCAACTAAAAAACATGATTCATTCTCAAAGAATCAACCATCT 775
||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 634 AGCAGAGATTTAAGCAGAGTAACTAAAAAACATGATTCATCCTCAAAGGATCAACCATCT 693
Query 776 ATTGCAAGTAAACCGAAGAGAAAGGAACCTGGATCTATCCCCTGTATTAAAGATCTGTGG 835
||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 694 ATTGCAATTAAACCAAAGAGAAAGGAACCTGGATCTATTCCAAGTATTAAAGATCTGTGG 753
Query 836 AAAGATTTTTCCCCGGCAAGTTCCAAGATTCAGACACCAGCTTTCGATGATGTTTGTCAG 895
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 754 AAAGATTTTTCCCCGGCAATTTCCAAGATTCAAACACCAGCTTTGGATGATGTTTGTCAG 813
Query 896 GACTATTTTATCTCCATCAAGACGACTAGCACAGCTCAGAAACAAAGCAGTGCTGTGGCA 955
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 814 GACTATTTTAGCTCCATCAAGACGACTAGCACAGCTCAGAAACAAAGCAGTGCTGCGGCA 873
Query 956 AGTAGTAGCAATAGCGGAAATCATAACTTGACTGGCTTTCAGCAAACTGAGCTATTCCAC 1015
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 874 AGTAGTAGCAATAGCGGAAATCATAACTTGACTGGCTTTCAGCAAACTGGGCAATTCTTG 933
Query 1016 GATTTTTCCCACCCTTCTCCTCCATCTCATCGTTTCTTCTTGCATAGTGATCCAAGGATC 1075
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GATTGTTCTCACCCTTCTCCTCCATCTCATCGTTTCTTCTTGCATAGTGATCCAAGGATC 993
Query 1076 CGGAATCTAGCTCGACAGCGGTTACCAAACTTCTTTCCTCTGGGAATTGTCAATGATAGG 1135
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 994 CGGAATCTAGCTCAACAGCGGTTACCAAACTTCTTGCCTCTGGGAATTGTCAATGATAGG 1053
Query 1136 GAGAGCCAGCGAGAGGTGTTCCTTGTTGATTATATGAATCAATTTGGCAGCAAAGGGAGT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GAGAGCCAGCGAGAGGTGTTCCTTGTTGATTATATGAATCAATTTGGCAGCAAAGGGAGT 1113
Query 1196 TCTAAAGCTGGAGACTCTAGCAGCAAAAGCTGCAGAAGAGGGAAAACAAAGTCAAAGGTT 1255
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1114 TCTAAAACTGGAGACTCTAGCAGCAAAAGCTGCAGAAGAGGGCAAACAAAGTCAAAGTTT 1173
Query 1256 TCAAAGAGC-CAAGAGAGCGCACACAATTCTGAAGGCTGGTTAAATCCTAAAACGAGAGC 1314
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TCAAA-AGGACAAGAGAGCGCACACAATTCTGAAGGCTGGTTAAATCCTAAAACGAGAGC 1232
Query 1315 TGCAGCTCCAAAGGATGCTGGGAAAAGGCGTGTATCTGCTGACAGTGGCTCTGCAGGTCA 1374
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 1233 TGCAGCTCCAAAGGATGCTGGCAAAAGGCGTGTATCAGCTAACAGTGGCTCTGCAGGTCA 1292
Query 1375 TTGGTTCACATCCCCAGAAGGAAGAAAGGTATATATCTCTAAAAGCGGACAGGAGTTTTC 1434
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1293 TTGGTTCACATCCCCAGAAGGAAGGAAGGTATATATCTCTAAAAGCGGACAGGAGTTTTC 1352
Query 1435 AGGTCAAAGTGCTTATAGATGTTACAAAAAGGAGAACGGAG-TCGGGTTTaagaagtcca 1493
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1353 AGGTCAAAGTGCTTATAGATGTTACAAAAAGGAGAACGGAGGT-GGGTTTAAGAAGTCTA 1411
Query 1494 gaaagaaacgacaaccaaagaaaaaggcgaagaattga 1531
||||||||||||| |||||||| |||||||||||||||
Sbjct 1412 GAAAGAAACGACAGCCAAAGAAGAAGGCGAAGAATTGA 1449
Score = 418 bits (226), Expect = 7e-116
Identities = 292/321 (91%), Gaps = 16/321 (5%)
Strand=Plus/Plus
Query 155 ATGGATTCGATTGAGCCACCATCGTTTTCGCTAGGGTTTGATCTTGATGCTGCATCGGAT 214
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCAATTGAGCCACCATCGTTTTCGCTAGGGTTTGATCTTGATGCTGCATCGGA- 59
Query 215 CTCCAATCGGAAATCCATCAAAACCCTAGCTCCACCGGCGACCAATTAATCGGGGACGGC 274
| | | | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 -T-C---C----A--CATCAGAACCCTAGCTCCACCGGCGACCAATTAATCGGGGACGGC 108
Query 275 GATAACGAGCCAGAGTTGGGACTTACTGTCTCAGATTCCGATCGGGAGCTTGAACCAGAT 334
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 109 GATAACGAGCCAGAGGCGGGACTTACGGTCTCAGATTCCGATCGGGAGCTTGAACCAGAT 168
Query 335 TTTACAAGCCCGGTTCTCAAGCGGTTGCGACGAGGGA-TTAATCCCAACAAGTGTTCTGT 393
|||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 169 TTTAGAAGTCCGGTTCTCAAGCGGTTGCGACG-GGGAATTAATCCCAACAAGTGTTCT-T 226
Query 394 G-AAAGATGATAGAAGCGTAGCTGTAGAGGATCGGGATGATGACATTGAAGAGTTCTCTT 452
| |||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 227 GGAAAGATGATAGAGGCGTGGCTATAGAGGATCGGGATGATGACATCGAAGAGTTCTCTT 286
Query 453 CTCCTGAGGATTTTCCTACGG 473
|||| ||||||||||| ||||
Sbjct 287 CTCCAGAGGATTTTCCCACGG 307
> Ahg918621 jgi|Araly1|918621|Al_scaffold_0350_1
Length=264
Score = 130 bits (70), Expect = 4e-29
Identities = 150/188 (80%), Gaps = 7/188 (4%)
Strand=Plus/Plus
Query 620 AGTTCTGTTGCATCGTTGTTTCAGATGTCAA---GTCGTAGTCCTCTACGAAGGTTCCAG 676
||||||||| |||| || ||||| | ||||| || |||||||||| ||| |||||||
Sbjct 67 AGTTCTGTTACATCATTATTTCAAAGGTCAACTTGTAGTAGTCCTCTTGGAAAGTTCCAG 126
Query 677 CTACTAGATTCAGATTCTGAAGATGACCATCCATCCACCAGCAGAGATTTAAGCGGAG-C 735
||||||||||||||||||||||| || ||||||||||| ||||||| ||| ||| || |
Sbjct 127 CTACTAGATTCAGATTCTGAAGAAGATCATCCATCCACTAGCAGAGGTTTGAGCCTAGTC 186
Query 736 AACTAAAAAACATGATTCATTCTCAAAGAATCAACCATCTATTGCAA-GTAAACCGAAGA 794
| ||| || ||| ||| | ||||||| |||| |||| ||| || ||||| | ||||
Sbjct 187 A-CTAGAACTTATGTTTCCTCCTCAAAGGGTCAATTATCTGTTG-AACGTAAAACAAAGA 244
Query 795 GAAAGGAA 802
|||| |||
Sbjct 245 GAAAAGAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5