BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20500.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479575 jgi|Araly1|479575|fgenesh2_kg.3__2276__AT3G20500.1 1016 0.0
> Ahg479575 jgi|Araly1|479575|fgenesh2_kg.3__2276__AT3G20500.1
Length=1303
Score = 1016 bits (550), Expect = 0.0
Identities = 641/682 (94%), Gaps = 18/682 (3%)
Strand=Plus/Plus
Query 836 GGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCCGTGGCTAATAGTCCTCTTCCATGT 895
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 626 GGCTGATCTCTCAAAGGTGGACCGAGAAAGAACTCCATGGCTAATAGTCCTCTTCCATGT 685
Query 896 ACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAAATGATGGCTGAAAT 955
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 686 ACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAGATGATGGCTGAAAT 745
Query 956 GGAGCCTTTGCTTTATGCGAGCGGTGTTGATATTGTATTTACTGGTCATGTCCATGCTTA 1015
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 746 GGAGCCTTTGCTTTATGCAAGCGGTGTTGATATCGTATTTACTGGTCATGTCCATGCTTA 805
Query 1016 TGAACGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCCGTACACATTAC 1075
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 806 TGAGCGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCGGTACACATAAC 865
Query 1076 CATAGGTGATGGAGGAAACAGAGAAGGATTGGCTCGCAAGTACAAAGATCCGTCACCAGA 1135
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 866 CATAGGCGATGGAGGAAACAGAGAAGGGCTGGCTCGCAAGTACAAAGATCCGTCGCCAGA 925
Query 1136 GTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGGGAGCTTCAGATGGTGAATTCAAC 1195
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 926 GTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGCGAGCTTCAGATGGTGAACTCAAC 985
Query 1196 ACATGCGCTATGGACCTGGCATAGGAACGATGATGACGAACCAACAAGGTCTGATGAAGT 1255
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 986 CCATGCGCTTTGGACCTGGCATAGGAACGATGATGACGAGCCAACAAGGTCTGATGAAGT 1045
Query 1256 TTGGTTAAACTCTCTTGTGAACTCCGGATGCTTGAAGAAAAGGCCTCAAGAACTCAGGAA 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1046 TTGGTTAAACTCTCTTGTGAACTCGGGATGCTTGAAGAAAAGGCCTCAAGAACTCAGGAA 1105
Query 1316 AATGCTCTTGGAACCTTAATTATAT---CCATAAAGTGAGAATTT-CAGTAAAATAGTCC 1371
||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 1106 AATGCTCTTGGAACCTTAATTATATAATCCATAAAGTGAGA-TTTGCAGTAAAATAGTCC 1164
Query 1372 ATTAA--A--T--ATA--GAAATCTACAAGCTTGTAATGTTGTTAGCAATGGGACTCTTA 1423
||||| | | ||| |||| |||||||||||| ||| |||||||||||||||||||
Sbjct 1165 ATTAAGTAAGTCTATATAGAAAGCTACAAGCTTGT--TGT-GTTAGCAATGGGACTCTTA 1221
Query 1424 ATCACACCATTGAAGAAGATTTTCACCAACTCTATAGAAA--TCATAGTTCCAACTTTAA 1481
||||||||||||||||||| || ||||||||| ||||||| || |||||||||||||||
Sbjct 1222 ATCACACCATTGAAGAAGAATTCCACCAACTCCATAGAAAAATCTTAGTTCCAACTTTAA 1281
Query 1482 AATTTTGTAAACTTGCACTTTG 1503
||||||||||||||||||||||
Sbjct 1282 AATTTTGTAAACTTGCACTTTG 1303
Score = 907 bits (491), Expect = 0.0
Identities = 587/634 (93%), Gaps = 4/634 (1%)
Strand=Plus/Plus
Query 1 GAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGGATTTTGCTACTCGTAACATTATCAG 60
|||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||
Sbjct 1 GAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGAAGATTGCTGCTCGTAACAGTATC-- 58
Query 61 TGTCAATAATCTTTACTTCTGCGGCCGCAGATGATTACGTCCGACCAAAACCTCGTGAAA 120
|| | |||||||| |||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 59 TG-CGTTAATCTTTGCTTCTGTGGCGGCAGATGATTACGTCAGACCAAAACCTCGTGAAG 117
Query 121 CCTTGCAGTTTCCATGGAAACAAAAGTCCTCTTCTGTACCCGAGCAGGTGCATATCTCAT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 118 CCTTGCAGTTTCCATGGAAACAAAAGTCCTCTTCTTTACCCGAGCAGGTGCATATCTCAT 177
Query 181 TGGCTGGAGATAAACATATGCGAGTTACTTGGGTTACGAATGACAAATCGTCTCCTTCAT 240
|||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||| |
Sbjct 178 TGGCTGGAGATAAACATATGCGGGTCACTTGGGTTACGAGTGACAAATCATCTCCTTCGT 237
Query 241 TTGTTGAATATGGAACATCGCCAGGGAAATACTCTTATCTTGGTCAAGGAGAAAGCACCT 300
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 238 TTGTTGAATATGGAACATCGCCAGGGAAATACTCCTATCTCGGTCAAGGAGAAAGCACCT 297
Query 301 CCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATTGGGCCATTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 CCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATCGGGCCATTGG 357
Query 361 AAGCGGATACTGTTTATTATTACCGTTGTGGTGGAGAAGGACCTGAGTTCCATTTGAAAA 420
||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||
Sbjct 358 AAGCGGATACTGTTTATTATTACCGTTGTGGTGGAAAAGGGCCCGAGTTCCATCTGAAAA 417
Query 421 CACCACCAGCTCAGTTCCCGATTACTTTTGCAGTGGCGGGGGATCTTGGACAAACCGGTT 480
|||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 418 CACCGCCAGCTCAGTTTCCAATTACTTTTGCAGTGGCTGGGGATCTTGGGCAAACTGGTT 477
Query 481 GGACTAAGTCGACTCTAGATCATATTGATCAATGCAAATATGCTGTGCATCTACTTCCAG 540
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 478 GGACTAAGTCGACTCTAGATCATATCGATCAGTGCAAATACGCTGTGCATCTACTTCCTG 537
Query 541 GGGATCTATCGTATGCGGACTATATGCAGCATAAGTGGGACACGTTTGGGGAACTAGTTC 600
||||||| || ||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 538 GGGATCTTTCTTATGCTGACTATATGCAGCATAAGTGGGACACGTTTGGAGAGCTGGTTC 597
Query 601 AGCCTCTGGCAAGTGTAAGGCCGTGGATGG-TGA 633
|||||||||| ||||||||||| ||||||| |||
Sbjct 598 AGCCTCTGGCTAGTGTAAGGCCATGGATGGCTGA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5