BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20500.1 Length=1507 Score E Sequences producing significant alignments: (Bits) Value Ahg479575 jgi|Araly1|479575|fgenesh2_kg.3__2276__AT3G20500.1 1016 0.0 > Ahg479575 jgi|Araly1|479575|fgenesh2_kg.3__2276__AT3G20500.1 Length=1303 Score = 1016 bits (550), Expect = 0.0 Identities = 641/682 (94%), Gaps = 18/682 (3%) Strand=Plus/Plus Query 836 GGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCCGTGGCTAATAGTCCTCTTCCATGT 895 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 626 GGCTGATCTCTCAAAGGTGGACCGAGAAAGAACTCCATGGCTAATAGTCCTCTTCCATGT 685 Query 896 ACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAAATGATGGCTGAAAT 955 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 686 ACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAGATGATGGCTGAAAT 745 Query 956 GGAGCCTTTGCTTTATGCGAGCGGTGTTGATATTGTATTTACTGGTCATGTCCATGCTTA 1015 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 746 GGAGCCTTTGCTTTATGCAAGCGGTGTTGATATCGTATTTACTGGTCATGTCCATGCTTA 805 Query 1016 TGAACGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCCGTACACATTAC 1075 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 806 TGAGCGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCGGTACACATAAC 865 Query 1076 CATAGGTGATGGAGGAAACAGAGAAGGATTGGCTCGCAAGTACAAAGATCCGTCACCAGA 1135 |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 866 CATAGGCGATGGAGGAAACAGAGAAGGGCTGGCTCGCAAGTACAAAGATCCGTCGCCAGA 925 Query 1136 GTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGGGAGCTTCAGATGGTGAATTCAAC 1195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 926 GTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGCGAGCTTCAGATGGTGAACTCAAC 985 Query 1196 ACATGCGCTATGGACCTGGCATAGGAACGATGATGACGAACCAACAAGGTCTGATGAAGT 1255 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 986 CCATGCGCTTTGGACCTGGCATAGGAACGATGATGACGAGCCAACAAGGTCTGATGAAGT 1045 Query 1256 TTGGTTAAACTCTCTTGTGAACTCCGGATGCTTGAAGAAAAGGCCTCAAGAACTCAGGAA 1315 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1046 TTGGTTAAACTCTCTTGTGAACTCGGGATGCTTGAAGAAAAGGCCTCAAGAACTCAGGAA 1105 Query 1316 AATGCTCTTGGAACCTTAATTATAT---CCATAAAGTGAGAATTT-CAGTAAAATAGTCC 1371 ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| Sbjct 1106 AATGCTCTTGGAACCTTAATTATATAATCCATAAAGTGAGA-TTTGCAGTAAAATAGTCC 1164 Query 1372 ATTAA--A--T--ATA--GAAATCTACAAGCTTGTAATGTTGTTAGCAATGGGACTCTTA 1423 ||||| | | ||| |||| |||||||||||| ||| ||||||||||||||||||| Sbjct 1165 ATTAAGTAAGTCTATATAGAAAGCTACAAGCTTGT--TGT-GTTAGCAATGGGACTCTTA 1221 Query 1424 ATCACACCATTGAAGAAGATTTTCACCAACTCTATAGAAA--TCATAGTTCCAACTTTAA 1481 ||||||||||||||||||| || ||||||||| ||||||| || ||||||||||||||| Sbjct 1222 ATCACACCATTGAAGAAGAATTCCACCAACTCCATAGAAAAATCTTAGTTCCAACTTTAA 1281 Query 1482 AATTTTGTAAACTTGCACTTTG 1503 |||||||||||||||||||||| Sbjct 1282 AATTTTGTAAACTTGCACTTTG 1303 Score = 907 bits (491), Expect = 0.0 Identities = 587/634 (93%), Gaps = 4/634 (1%) Strand=Plus/Plus Query 1 GAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGGATTTTGCTACTCGTAACATTATCAG 60 |||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||| Sbjct 1 GAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGAAGATTGCTGCTCGTAACAGTATC-- 58 Query 61 TGTCAATAATCTTTACTTCTGCGGCCGCAGATGATTACGTCCGACCAAAACCTCGTGAAA 120 || | |||||||| |||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 59 TG-CGTTAATCTTTGCTTCTGTGGCGGCAGATGATTACGTCAGACCAAAACCTCGTGAAG 117 Query 121 CCTTGCAGTTTCCATGGAAACAAAAGTCCTCTTCTGTACCCGAGCAGGTGCATATCTCAT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 118 CCTTGCAGTTTCCATGGAAACAAAAGTCCTCTTCTTTACCCGAGCAGGTGCATATCTCAT 177 Query 181 TGGCTGGAGATAAACATATGCGAGTTACTTGGGTTACGAATGACAAATCGTCTCCTTCAT 240 |||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||| | Sbjct 178 TGGCTGGAGATAAACATATGCGGGTCACTTGGGTTACGAGTGACAAATCATCTCCTTCGT 237 Query 241 TTGTTGAATATGGAACATCGCCAGGGAAATACTCTTATCTTGGTCAAGGAGAAAGCACCT 300 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 238 TTGTTGAATATGGAACATCGCCAGGGAAATACTCCTATCTCGGTCAAGGAGAAAGCACCT 297 Query 301 CCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATTGGGCCATTGG 360 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 298 CCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATCGGGCCATTGG 357 Query 361 AAGCGGATACTGTTTATTATTACCGTTGTGGTGGAGAAGGACCTGAGTTCCATTTGAAAA 420 ||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||| Sbjct 358 AAGCGGATACTGTTTATTATTACCGTTGTGGTGGAAAAGGGCCCGAGTTCCATCTGAAAA 417 Query 421 CACCACCAGCTCAGTTCCCGATTACTTTTGCAGTGGCGGGGGATCTTGGACAAACCGGTT 480 |||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||| Sbjct 418 CACCGCCAGCTCAGTTTCCAATTACTTTTGCAGTGGCTGGGGATCTTGGGCAAACTGGTT 477 Query 481 GGACTAAGTCGACTCTAGATCATATTGATCAATGCAAATATGCTGTGCATCTACTTCCAG 540 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct 478 GGACTAAGTCGACTCTAGATCATATCGATCAGTGCAAATACGCTGTGCATCTACTTCCTG 537 Query 541 GGGATCTATCGTATGCGGACTATATGCAGCATAAGTGGGACACGTTTGGGGAACTAGTTC 600 ||||||| || ||||| |||||||||||||||||||||||||||||||| || || |||| Sbjct 538 GGGATCTTTCTTATGCTGACTATATGCAGCATAAGTGGGACACGTTTGGAGAGCTGGTTC 597 Query 601 AGCCTCTGGCAAGTGTAAGGCCGTGGATGG-TGA 633 |||||||||| ||||||||||| ||||||| ||| Sbjct 598 AGCCTCTGGCTAGTGTAAGGCCATGGATGGCTGA 631 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56411652845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5