BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20510.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479576 jgi|Araly1|479576|fgenesh2_kg.3__2277__AT3G20510.1 1288 0.0
Ahg342203 jgi|Araly1|342203|fgenesh1_pg.C_scaffold_3001966 276 2e-73
Ahg887810 jgi|Araly1|887810|Al_scaffold_0126_2 167 1e-40
Ahg949141 jgi|Araly1|949141|scaffold_801028.1 115 5e-25
> Ahg479576 jgi|Araly1|479576|fgenesh2_kg.3__2277__AT3G20510.1
Length=776
Score = 1288 bits (697), Expect = 0.0
Identities = 756/783 (97%), Gaps = 9/783 (1%)
Strand=Plus/Plus
Query 2 AAAAATGATGGACCGTAAGTGGAGGATTAGTTGTCTGAAGACCGTTGACG-AAAAAAGGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AAAAATGATGGACCGTAAGTGGAGGATTAGTTGTCTGAAGACCGTTGACGAAAAAAAGGC 60
Query 61 GGACCTTTTCCACGCGCTCACCACACAACACTTTCATAAAATCAATTCATCGATCCATCG 120
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 61 GGACCTTTTCCACGCGCTCACCACACAACACTTTCAT-ATATCAATTCATCGATCCATCG 119
Query 121 TCTCTATCAGATCAATTCATCGATTGCGATCGCTCTTTCAATTTTCTTCATCACCGGTGA 180
||||| ||||||||| || ||||| ||||||||| || || |||| |||||||||| ||
Sbjct 120 TCTCTTTCAGATCAA-TC--CGATTACGATCGCTC-TTGAACTTTCATCATCACCGGAGA 175
Query 181 AAATAATCGAAACCCAGC-ACGAGAAAAATGCATGATTTTTGCTTCACTATCCCGTACGG 239
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 176 AAATAATCCAAACCCAGCTA-GAGAAAAATGCATGATTTTTGCTTCACTATCCCGTACGG 234
Query 240 GATGCTTCTCATCGGCGGAGGATTTATCGGGTACATGAAGAAAGGAAGTATAACATCTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 235 GATGCTTCTCATCGGCGGAGGATTTATCGGGTACATGAAGAAAGGAAGTATTACATCTTT 294
Query 300 CGCCGGAGGTGCAGGCACTGGATTATTACTCATTCTCGCTGGTTATATCAGTCTCAAAGC 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 295 CGCCGGAGGTGCAGGCACTGGGTTATTACTCATTCTCGCTGGTTATATCAGTCTCAAAGC 354
Query 360 TTTTGAGAAGAAGAAGAATTCCACTATTGCTATGGTTCTTCAGACAGTCATCGCAGCTGC 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 355 TTTTGAGAAGAAGAAGAATTCCTCTATTGCTATGGTTCTTCAGACAGTCATCGCAGCTGC 414
Query 420 TCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTATGCCGGCTGGTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTATGCCGGCTGGTTT 474
Query 480 GGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGATCGCTACTGGTGG 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 GGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTGTACAAGATCGCTACTGGTGG 534
Query 540 CAATAAATTTCCAGCAAAAGCTGAATGATGGTTCTGCTACATGCAGATGATACTATCCGT 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAATAAATTCCCAGCAAAAGCTGAATGATGGTTCTGCTACATGCAGATGATACTATCCGT 594
Query 600 TGTTGAATTTGTCGATTAGAATTCTTTTTGGTGTACACAATGCGGTTGTCATAACGCCTT 659
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 595 TGTTGAATTTGTCGATTAGAATTCTATTTGGTGTACACAATGCTGCTGTCATAACGCCTT 654
Query 660 AATAGCTTGTATTAGTCAAAGAACTGCATATGGTCTTGTGTTTTCTTGTCATCGTGTTTT 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AATAGCTTGTATTAGTCACAGAACTGCATATGGTCTTGTGTTTTCTTGTCATCGTGTTTT 714
Query 720 TGTAACCACAAACTGTTTTGAGCTATACTACTATATATATTGAGATATATCTGCCGTTTC 779
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 715 TGTAACCACAAACTGTTTTGAGCAATACTACTATATATAT-GAGATATATCTGCCGTTTC 773
Query 780 GAT 782
|||
Sbjct 774 GAT 776
> Ahg342203 jgi|Araly1|342203|fgenesh1_pg.C_scaffold_3001966
Length=1557
Score = 276 bits (149), Expect = 2e-73
Identities = 157/161 (98%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 407 TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA 1456
Query 467 TGCCGGCTGGTTTGGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 TGCCGGCTGGTTTGGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGA 1516
Query 527 TCGCTACTGGTGGCAATAAATTTCCAGCAAAAGCTGAATGA 567
|| ||||||||||||||||||| ||| ||||||| ||||||
Sbjct 1517 TCTCTACTGGTGGCAATAAATTCCCATCAAAAGCGGAATGA 1557
> Ahg887810 jgi|Araly1|887810|Al_scaffold_0126_2
Length=1653
Score = 167 bits (90), Expect = 1e-40
Identities = 90/90 (100%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 407 TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA 1495
Query 467 TGCCGGCTGGTTTGGTTGCTGGGATCAGTG 496
||||||||||||||||||||||||||||||
Sbjct 1496 TGCCGGCTGGTTTGGTTGCTGGGATCAGTG 1525
> Ahg949141 jgi|Araly1|949141|scaffold_801028.1
Length=365
Score = 115 bits (62), Expect = 5e-25
Identities = 79/87 (91%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 149 ATCGCTCTTTCAATTTTCTTCATCACCGGTGAAAATAATCGAAACCCAGCACGAGAAAAA 208
||||||| || || |||| |||||||||| || ||||||| ||||||||| |||||||||
Sbjct 365 ATCGCTC-TTGAACTTTCATCATCACCGGAGAGAATAATCCAAACCCAGCTCGAGAAAAA 307
Query 209 TGCATGATTTTTGCTTCACTATCCCGT 235
|||||||||||||||||||||||||||
Sbjct 306 TGCATGATTTTTGCTTCACTATCCCGT 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5