BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20520.1
Length=2324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497279 jgi|Araly1|497279|fgenesh2_kg.126__1__AT3G20520.1 3461 0.0
Ahg479577 jgi|Araly1|479577|fgenesh2_kg.3__2278__AT3G20520.1 3386 0.0
> Ahg497279 jgi|Araly1|497279|fgenesh2_kg.126__1__AT3G20520.1
Length=2174
Score = 3461 bits (1874), Expect = 0.0
Identities = 2080/2180 (95%), Gaps = 12/2180 (1%)
Strand=Plus/Plus
Query 1 GAAAGCTCTCCACTACCATGGCGTGTCCTAGAGTGATTTTTCTGATTCTGATCACGTTCT 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1 GAAAGCTCTCCACTACCATGGCGTGCCCTAGAGTGATTTTTCTGATTCTGATCAAGTTCT 60
Query 61 TCATTTTACAGACTGCTTTCTCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120
|||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 61 TCATACTACAGACTGCTTTATCAAGTTCTTGGAAAACATTAAGTGGGAAACCTCCGGCTG 120
Query 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180
Query 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTGAATATAACAACTTCACCAGAAGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
Query 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAAGCTTGACAATGGTTCTAACGTCATAAGAA 300
||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
Sbjct 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAATCTTCACAATGGTTCTAATGTCATAAGCA 300
Query 301 TTGACCCACATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTACCCAAATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360
Query 361 TGAAATTGGCACAGGGTGTTGTCTCAAGACCATATATATTCGATGATGTATCCTCGATAT 420
|||||||||| ||||||||| ||||||||||| | |||||||||||||| ||||||||||
Sbjct 361 TGAAATTGGCCCAGGGTGTTATCTCAAGACCAGAAATATTCGATGATGTTTCCTCGATAT 420
Query 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCTTCAGGCCTCTGGTTGAACATTCAGGACA 480
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TGCCTATTGAAGAAGTAGCAAAGTTGACAGATTCAGGCCTCTGGTTGAACATTCAGGACA 480
Query 481 GTGCTTTCTACGCAAAACACAATTTGAGTATGAGAAACTCTGTTGTCTCTCTATCAAGAC 540
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GTGCTTTCTACACGCAACACAATTTGAGTATGAGAAACTCTGTTATCTCTCTATCAAGAC 540
Query 541 GCCTGAAAGTTAACTTCATATCTTCTCCAGGGATCAGTTTCCTGAAGAGCATGAAAAACA 600
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GCCTGATAGTTAACTTCATATCTTCTCCAGAGATCAGTTTCCTGAAGAGCATGAAAAACA 600
Query 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGAAC-ACATAGAA 659
||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||||
Sbjct 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAAGTTTCTAAAACAAGA-CGACATAGAA 659
Query 660 CCCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTT 719
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 660 CCCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATTTAAGTTATATAAGAACCTTT 719
Query 720 TCTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTAGATTCAGCTCTTTACCTA 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 TCTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTTGATTCAGCTCTTTACCTA 779
Query 780 CAACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGCTTACAAGTTTTCGCCTCG 839
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 CAACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGTTTACAAGTTTTCGCCTCG 839
Query 840 GAGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTAT 899
Query 900 CTATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCCTATCAGACTTCCCGGTG 959
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 900 TTATCTTTCATTGACAACGGAAACTTCTCGGTTGATGGTTTCCTATCAGACTTTCCGGTG 959
Query 960 ACTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGAC-CCTAA-AAGAGCTAAGGAGC 1017
||||||||||||||||||||||| ||||||||| ||||| || || || |||||||||||
Sbjct 960 ACTCCATATCGAGCCATCAATTGTTTCTCTCATTTGGACACC-AAGAA-AGCTAAGGAGC 1017
Query 1018 AAGCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAGCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTG 1077
Query 1078 ACTTGGCGTATCAGAGAGCTGCAAGCGACGGGGCTGATATTCTTGATTGCAATGTCCAGA 1137
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1078 ACTTGGCGTATCAGAGAGCTGCAACCGACGGGGCTGACATTCTTGATTGCAATGTCCAGA 1137
Query 1138 TGTCTAAAGACAAGATTCCCTTTTGTATGAGCTCCTTTGATCTTATAAACAGCACTAATG 1197
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 TGTCTAAAGACAAGATTCCCTTTTGTATGAGCTCCATTGATCTTATAAACAGCACTAATG 1197
Query 1198 TCATCGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATT-AACCCACGGAGA 1256
|||||||||||||||| ||||||||||||||||||| |||||||||| |||| || ||||
Sbjct 1198 TCATCGAAACAAGCTTTAGAAATCTGTCATCAGTAGCTTCAGAGATTCAACC-ACAGAGA 1256
Query 1257 AGTGGTATCTACACTTTTAGCCTGACCATGTCTCAGATACAAACCTTGAAGCCCACTATT 1316
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 AGTGGGATCTACACTTTCAGCCTGACCATGTCTCAGATACAAACCTTGAAGCCTACTATT 1316
Query 1317 TCGAATCTTGAAAAGGACTCTGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGGGAAG 1376
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1317 TCGAATCTTGAAAGGGACTCTGGTTTATTCAGAAACCCAAGAAACAAGAAGGCTGGAAAG 1376
Query 1377 TTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCGTTACAGCTCTCTCTTAGGCCTC 1436
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1377 TTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCATTACAGCTCTCTCTTAGGCATC 1436
Query 1437 TTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGTCGAT 1496
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1437 TTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATAAGCGTGGTCGAT 1496
Query 1497 GCGGTACTAGATGAATTGAAGAGAGCTACTACTCAACAAAACAAGACAAGTGCAAGAACA 1556
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1497 GCGGTACTAGATGAATTGAAGAGAGCTACTAATCAGCAAAACAAGACAAGTGCAAGAACA 1556
Query 1557 ATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAACAAAATG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAACAAAATG 1616
Query 1617 AATCATGACGAGCTGGTCTATAGAGTCGACGACAACATCCGTGATGTAGCAGATTCGGCG 1676
|||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 1617 AATCATGACGAGCTAGTCTATAGAGTCGAGGAAAACATCGGTGATGTAGCAGATTCGGCG 1676
Query 1677 ATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCAGTCTTTCCC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCAGTCTTTCCC 1736
Query 1737 TACAAAGGGTTTATCATCCTTGAAA-AGGAGACAAATATTGCTTCAAAGCTAAAATCAAA 1795
||| ||||||||||| |||| | ||| ||||||| ||| |||||||||||||||||
Sbjct 1737 TACGTAGGGTTTATCACCCTT-ACGCAGGGGACAAATGTTGTTTCAAAGCTAAAATCAAG 1795
Query 1796 CGGGCTTCGTGTTTACGTTGAAAGATTTAGCAACGAGTGTGTAACTCATGCATTTGACTT 1855
|||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1796 CGGGCTTCGTGTTTACGTAGAAAGATTTAGCAACGAGTTTGTAACTCAAGCATTTGACTT 1855
Query 1856 TTACGATGATCCAACGTTAGAGATAGACTCTTTTGTCCGCGATGTCCAAATTGATGGCAT 1915
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1856 TTACGAGGATCCAACGTTGGAGATAGACTCTTTTGTCCGCGATATCCAAATTGATGGCAT 1915
Query 1916 CATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACAAGTGTTACGGCGAATT 1975
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1916 CATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACCAGTGTTACGGCAAATT 1975
Query 1976 TGGTCTGACT-ACAACCGGTGAGCTCATAACTTTCGCGAATCCAATGCTTCTTCCACCAG 2034
|| |||| || | |||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1976 TGTTCTGCCTGA-AACCGGTGAGCTCAGAACTTTCGGGAATCCATTGCTTCTTCCACCAG 2034
Query 2035 CTGAAGCTCCATATCCAGCACTACTTGACTCAGATGTGACGGAACCACCATTGCCTGAAG 2094
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 2035 CTGAAGCTCCATATCCATTACTAGGTGACTCAGATGTGACGGAACCACCATTGCCTGAAG 2094
Query 2095 CAAGAAGTCAGCCTCCTGCTTCTTCTCCATCAAAGGCAGAGGAAAAAGCAATAGAAGTTC 2154
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2095 TAAGAAGTCAGCCTCCTGCTTTTTCACCATCAAAGGCAGAGGAAAAAGCAATAGAAGTTC 2154
Query 2155 CCTTTGCATTTATAGCCATG 2174
||||||||||||||||||||
Sbjct 2155 CCTTTGCATTTATAGCCATG 2174
> Ahg479577 jgi|Araly1|479577|fgenesh2_kg.3__2278__AT3G20520.1
Length=2316
Score = 3386 bits (1833), Expect = 0.0
Identities = 2177/2339 (93%), Gaps = 40/2339 (2%)
Strand=Plus/Plus
Query 1 GAAAGCTCTCCACTACCATGGCGTGTCCTAGAGTGATTTTTCTGATTCTGATCACGTTCT 60
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 1 GAAAGCTCTCCACTACCATGGCGTGCCCTAGATTGATTTTTCTGATTCTGATCAAGTTCT 60
Query 61 TCATTTTACAGACTGCTTTCTCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTTTACAGACTGCTTTATCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120
Query 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTAGTCAAGCATATCAGT 180
Query 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
Query 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAAGCTTGACAATGGTTCTAACGTCATAAGAA 300
||||||||||||||||||||||||||||||| ||||| || |||||| | || || | |
Sbjct 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAATCTTGATAACGGTTCTGATGTAATGACCA 300
Query 301 TTGACCCACATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 TTTACCCAAATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTATCTGATG 360
Query 361 TGAAATTGGCACAGGGTGTTGTCTCAAGACCATATATATTCGATGATGTATCCTCGATAT 420
|||||||||| | ||||||| |||| |||||| ||||||| |||||| | ||||||||||
Sbjct 361 TGAAATTGGCCCGGGGTGTTCTCTCGAGACCAAATATATTTGATGATCTTTCCTCGATAT 420
Query 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCTTCAGGCCTCTGGTTGAACATTCAGGACA 480
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCCTCAGGCCTCTGGTTAAACATTCAGGACA 480
Query 481 GTGCTTTCTACGCAAAACACAATTTGAGTATGAGAAACTCTGTTGTCTCTCTATCAAGAC 540
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GTGCTTTCTACGCGCAACACAATTTGAGTATGAGAAACTCTGTTCTCTCTCTATCAAGAC 540
Query 541 GCCTGAAAGTTAACTTCATATCTTCTCCAGGGATCAGTTTCCTGAAGAGCATGAAAAACA 600
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 541 TCCTGAAAGTTAACTTCATATCTTCACCAGAGATCAGTTTCCTGAAGAGCATGAAAAACA 600
Query 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGAACACATAGAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGACCACATAGAAC 660
Query 661 CCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTTT 720
Query 721 CTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTAGATTCAGCTCTTTACCTAC 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCATAGATTCAGCTCTTTACCTAC 780
Query 781 AACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGCTTACAAGTTTTCGCCTCGG 840
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 AACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGTTTACAAGTTTTCGCCTCGG 840
Query 841 AGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTATC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTATT 900
Query 901 TATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCCTATCAGACTTCCCGGTGA 960
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 901 TATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCATATCAGACTCCCCGGTGA 960
Query 961 CTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGAC-CCTAAAAGAGCTAAGGAGCAA 1019
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 961 CTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGACACC-AAAAGAGCTAAGGAGCAA 1019
Query 1020 GCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTGAC 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTAAGATAACTATTCTCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTGAC 1079
Query 1080 TTGGCGTATCAGAGAGCTGCAAGCGACGGGGCTGATATTCTTGATTGCAATGTCCAGATG 1139
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1080 TTGGCGTATGAGAGAGCTGCAAGCGACGGGGCAGACATTCTTGATTGCAATGTCCAGATG 1139
Query 1140 TCTAAAGACAAGATTCCCTTTTGTATGAGCTCCTTTGATCTTATAAACAGCACTAATGTC 1199
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 TCTAAAGACAAGATTCCTTTTTGTATGAGCTCCATTGATCTTATAAACAGCACTAATGTT 1199
Query 1200 ATCGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATT-AACCCACGGAGAAG 1258
|| |||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 1200 ATTGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATTCAACC---G-AGAAG 1255
Query 1259 TGGTATCTACACTTTTAGCCTGACCATGTCTCAGATACAAACCTTGAAGCC------CAC 1312
||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1256 TGGGATCTACAGTTTCAGCCTGACCATGTCTCAGATACAAACCTTGAAGCGTAAGAGCAC 1315
Query 1313 TATTTCGAATCTTGAAAAGGACTCTGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGG 1372
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1316 TATTTCGAATCCTGAAAGGGACTGGGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGG 1375
Query 1373 GAAGTTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCGTTACAGCTCTCTCTTAGG 1432
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1376 GAAGTTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCATTACAGCTCTCTCTTAGG 1435
Query 1433 CCTCTTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGT 1492
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CATCTTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGT 1495
Query 1493 CGATGCGGTACTAGATGAATTGAAGAGAGCTACTACTCA--A-CAAAACAAGACAAGTGC 1549
|||||||||||||||||||||||||||||||| || | | | |||||||||||||||||
Sbjct 1496 CGATGCGGTACTAGATGAATTGAAGAGAGCTAATAATAATCAGCAAAACAAGACAAGTGC 1555
Query 1550 AAGAACAATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAA 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AAGAACAATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAA 1615
Query 1610 CAAAATGAATCATGACGAGCTGGTCTATAGAGTCGACGACA-ACATCCGTGATGTAGCAG 1668
||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||| ||
Sbjct 1616 CAAAATGAATCATGATGAGCTAGTCTATAGAGTCGATAA-AGACATCCGTGATGTAGAAG 1674
Query 1669 ATTCGGC-GATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCA 1727
|||| || | ||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1675 ATTCTGCAG-TCAGGGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGGAAGAACTCA 1733
Query 1728 GTCTTTCCCTACAAAGGGTTTATCATCCTTGAA-AAGGAGACAAATATTGCTTCAAAGCT 1786
|||||||| |||||||||||| ||||| || || |||| | ||||| ||| |||||||||
Sbjct 1734 GTCTTTCCTTACAAAGGGTTTTTCATCTTT-AAGAAGGGGCCAAATGTTGTTTCAAAGCT 1792
Query 1787 AAAATCAAACGGGCTTCGTGTTTACGTTGAAAGATTTAGCAACGAGTGTGTAACTCATGC 1846
|||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| |
Sbjct 1793 AAAATCAAGCGGGCTTCGTGTTTACGTAGAAACATTTAGCAATGAGTTTGTAACTCAAGA 1852
Query 1847 ATTTGACTTTTACGATGATCCAACGTTAGAGATAGACTCTTTTGTCCGCGATGTCCAAAT 1906
|| ||| |||||||| ||||||||||| |||||||||| ||||||||| ||| ||||| |
Sbjct 1853 ATATGATTTTTACGAGGATCCAACGTTGGAGATAGACTGTTTTGTCCGGGATATCCAAGT 1912
Query 1907 TGATGGCATCATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACAAGTGTTA 1966
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1913 TGATGGCATTATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACCAGTGTTA 1972
Query 1967 CGGCGAATTTGGTCTGACT-ACAACCGGTGAGCTCATAACTTTCGCGAATCCAATGCTTC 2025
|||| |||||| |||| || | |||||||||||||| |||||| | |||||||||| ||
Sbjct 1973 CGGCAAATTTGATCTGCCTGA-AACCGGTGAGCTCAGAACTTTGGGGAATCCAATGATT- 2030
Query 2026 TTC-CACCAGCTGAAGCTCCATATCCAGCACTACTTGA-CTCAGATGTGACGGAACCACC 2083
|| | ||||| ||||||||||||||| ||||| | | ||||||||| ||||||| ||
Sbjct 2031 TTGGCTCCAGCCGAAGCTCCATATCCATTACTACGT-ATCTCAGATGTCTCGGAACCTCC 2089
Query 2084 ATTGCCTGAAGCAAGAAGTCAGCCTCCTGCTTCTTCTCCATCAAAGGCAGAGGAAAAAGC 2143
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2090 ATTGCCTGAAGTAAGAAGTCAGACTCCTGCTTCTTCACCATCAAAGGCAGAGGAAAAAGC 2149
Query 2144 AATAGAAGTTCCCTTTGCATTTATAGCCATGGCTATTCTTGTGTGCTTCTTCATTTCAGT 2203
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 2150 AATAGAAGTTCCCTTTGCATTTATAGCCATGGCCATTCTTGTGAGCTTCTTTATTTCAGT 2209
Query 2204 TTAGTGATAAGTGTTTGTAACCGACTTCGACTGCAGTATCTGCAAGTGAACCTTATGAAT 2263
|||||| |||||| |||||||| ||||| |||||| || | | | ||||||||
Sbjct 2210 TTAGTGTTAAGTGCTTGTAACCTACTTCAACTGCA----CT--A--T---C-TTATGAAT 2257
Query 2264 AACAATGTCTAGTACTATATCATTCTTCTTTTTAAGGTTTCAATAAGATATCTAGAATT 2322
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2258 AACAGTGTCTAGTACTATATCATTCTTCTTTTTAATGTTTCAATAAGATATCTAGAATT 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87531383010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5