BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20530.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479578 jgi|Araly1|479578|fgenesh2_kg.3__2279__AT3G20530.1 2307 0.0
Ahg340899 jgi|Araly1|340899|fgenesh1_pg.C_scaffold_3000662 233 2e-60
> Ahg479578 jgi|Araly1|479578|fgenesh2_kg.3__2279__AT3G20530.1
Length=1415
Score = 2307 bits (1249), Expect = 0.0
Identities = 1372/1429 (96%), Gaps = 17/1429 (1%)
Strand=Plus/Plus
Query 11 CTCATTTTTGTTTGTTCCTTCTTTCTTTTGAGGCCAAAAGAGACCAGATTCATTTTTGGT 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCATTTTTGTTTGTTCCTTCTTTCTTTTGAGGCCAAAAGAGACCAGATTCATTTTTGGT 60
Query 71 TTCTTCAAAGGCCAAACC--TTATTTTCTTATTTTCTCAGACAAACCCTTTTGCCATATT 128
|||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||
Sbjct 61 TTCTTCAAAGGCCAAACCTTTTTTTTTCTTATTTTCTCAG-CAAACCCTTTTGCCATCTT 119
Query 129 ACAAAATAAAATTTATTCGTCTGAGAATTATCTTGATCCCTTTTGGATTCGAGGTTCAAG 188
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 ACAAAATAAAATCTGTTCGTCTGAGAATTATCTCGATCCCTTTTGGATTCGAGGTTCAAG 179
Query 189 AACATTCATGAACTTCGAGTAAATCA-ATCATCTTCTTGTAGTAATAATCCAGGAAGATA 247
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AACATTCATGAACTTCGAGT-AATCAGATCATCTTCTTGTAGTAATAATCCAGGAAGATA 238
Query 248 CATTATCAACACACATAAAACAGAATGAAAATCAATTGCTTGTTCTGTTGTATGTCCCAC 307
|| || | | |||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 239 CA-TAAC-A-ACACATAATACAGAATGAAAATAAATTGCTTGTTCTGTTGTATGTCCGAG 295
Query 308 AGACGATTTAACAGACGATCATCATCGAGACAAAGCATCAAAGACTGCATTGATGCAAAG 367
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGACGATTTACCAGACGATCATCATCGAGACAAAGCATCAAAGACTGCATTGATGCAAAG 355
Query 368 AACAATATAACTACATTTGACAACATCTCTTTTAAAACAGATAGCAGTAGGCGAAGATAC 427
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AACAATATAACTACGTTTGACAACATCTCTTTTAAAACAGATAGCAGTAGGCGAAGATAC 415
Query 428 ATATCCGAGGAGATAGCAAAACTCGGTAAAGGGAACATCAGTGCTCATATTTTTACATTC 487
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 416 ATATCCGAGGAGATAGCAAAACTCGGTAAAGGGAACATCAGTGCTCACATTTTCACATTC 475
Query 488 AGAGAGCTTTGCGTCGCTACCAAGAACTTCAACCCCGATAATCAGCTCGGTGAAGGCGGG 547
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGAGAGCTCTGCGTCGCCACCAAGAACTTCAACCCCGATAATCAGCTCGGTGAAGGCGGG 535
Query 548 TTTGGAAGGGTTTACAAAGGGCAGATAGAAACCCCGGAACAAGTTGTTGCGGTTAAGCAG 607
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTGGAAGGGTTTACAAAGGGCACATAGAAACCCCGGAACAAGTTGTTGCGGTTAAGCAG 595
Query 608 CTAGACAGGAATGGTTACCAAGGGAACAGAGAGTTTCTTGTGGAAGTCATGATGTTGAGT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTAGACAGGAATGGTTACCAAGGGAACAGAGAGTTTCTTGTGGAAGTCATGATGTTGAGT 655
Query 668 CTCTTACATCATCAAAACCTTGTCAATTTGGTCGGATATTGCGCAGACGGTGATCAACGG 727
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 656 CTCTTACATCATCAAAACCTTGTCAATTTGGTTGGATATTGCGCAGATGGCGATCAACGG 715
Query 728 ATTCTTGTCTATGAATACATGCAAAATGGCTCTTTAGAGGATCATCTTCTAGAATTGGCG 787
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 716 ATTCTTGTCTATGAATATATGCAAAATGGCTCTTTAGAGGATCATCTTCTTGAATTGGCG 775
Query 788 CGGAACAAGAAGAAGCCGTTGGATTGGGACACAAGAATGAAAGTTGCGGCAGGAGCAGCT 847
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 CGGAACAAGAAGAAGCCGTTGGATTGGGACACAAGAATGAAAGTTGCAGCAGGAGCAGCG 835
Query 848 AGAGGGCTTGAGTATCTACACGAAACAGCAGATCCTCCTGTTATCTACAGAGACTTCAAG 907
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 836 AGAGGGCTTGAGTATCTACACGAAACAGCTGATCCTCCTGTGATCTACAGAGATTTCAAG 895
Query 908 GCCTCAAATATATTACTTGACGAAGAATTCAACCCAAAGCTTTCGGATTTCGGTTTAGCT 967
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 896 GCCTCAAACATATTGCTTGACGAAGAATTCAATCCAAAGCTTTCGGATTTCGGTTTAGCT 955
Query 968 AAGGTTGGTCCGACCGGTGGAGAGACTCATGTGTCAACGAGAGTGATGGGAACATACGGC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAGGTTGGTCCGACCGGTGGAGAGACTCATGTGTCAACGAGAGTGATGGGAACATACGGC 1015
Query 1028 TATTGTGCGCCTGAGTATGCTCTCACAGGACAGCTCACTGTGAAATCCGATGTATACAGC 1087
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1016 TATTGTGCGCCTGAGTATGCTCTCACAGGACAGCTCACTGTGAAATCAGATGTATACAGC 1075
Query 1088 TTCGGAGTCGTGTTCTTGGAGATGATCACAGGAAGACGAGTCATTGACACAACAAAACCA 1147
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1076 TTTGGAGTCGTGTTCTTGGAGATGATCACAGGAAGAAGAGTCATTGACACCACAAAACCA 1135
Query 1148 ACTGAAGAACAGAACTTAGTCACTTGGGCGAGTCCATTGTTCAAAGATAGGAGAAAGTTC 1207
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 ACTCAAGAACAGAACTTAGTCACTTGGGCGAGTCCATTGTTTAAAGATAGGAGAAAGTTC 1195
Query 1208 ACGTTAATGGCAGATCCATTGCTTGAAGGAAAGTATCCAATAAAAGGATTGTATCAAGCG 1267
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1196 ACGTTAATGGCGGATCCATTGCTTGAAGGAAAGTACCCGATAAAAGGATTGTATCAAGCG 1255
Query 1268 CTTGCAGTAGCAGCAATGTGTCTTCAAGAAGAAGCAGCAACGAGACCAATGATGAGTGAT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTTGCAGTAGCAGCAATGTGTCTTCAAGAAGAAGCAGCAACGAGACCAATGATGAGTGAT 1315
Query 1328 GTAGTCACTGCGCTTGAGTACTTAGCCGTGACCAAAACCGAAGAAGATGGACAAACTGTa 1387
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1316 GTAGTCACTGCGCTTGAGTACTTAGCCATGACCAAAACCGAAGAAGATGGACAAACTGTA 1375
Query 1388 gaaggagaagaagaagaagaagaagacgaaagaTCCAAACTTTGAGCAA 1436
|||| | | ||||||||||| |||||||||||||||||||||||
Sbjct 1376 GAAG-A-A-GAAGAAGAAGA------CGAAAGATCCAAACTTTGAGCAA 1415
> Ahg340899 jgi|Araly1|340899|fgenesh1_pg.C_scaffold_3000662
Length=1245
Score = 233 bits (126), Expect = 2e-60
Identities = 592/806 (73%), Gaps = 75/806 (9%)
Strand=Plus/Plus
Query 534 TCGGTGAAGGCGGGTTTGGAAGGGTTTACAAAGGGCAGA-T--AGAAACCCCGGAACAAG 590
||||||||||||||||||||||||||||||| ||||| | | ||||| || || | |
Sbjct 254 TCGGTGAAGGCGGGTTTGGAAGGGTTTACAA-GGGCAAACTTGAGAAAACC-GGCATGA- 310
Query 591 TTGTTGCGGTTAAGCAGCTAGACAGGAATGG-TTACCAAGGGAACAGAGAGTTTCTT-GT 648
||||||| || ||||| |||| || ||||| || | ||||||||| |||||| | | ||
Sbjct 311 TTGTTGCAGTGAAGCAATTAGATAGAAATGGATTGC-AAGGGAACAAAGAGTT-CATCGT 368
Query 649 GGAAGTCATGATGTTGAGTCTCTTACATCATCAAA-ACCTTGTCAATTTGGTCGGATATT 707
|| ||| ||||||| ||||| || ||||| ||| | ||||| ||| | | || ||||
Sbjct 369 TGAGGTCTTGATGTTAAGTCTATTGCATCA-CAAGCATCTTGTGAATCTCATTGGGTATT 427
Query 708 GCGCAGACGGTGATCA-ACGGA-TTCTTGTCTATGAATACATGCAAAATGGCTCTTTAGA 765
| || || || ||||| | | | |||| |||||||| ||||||| ||||| | ||
Sbjct 428 GTGCTGATGGAGATCAGA-G-ACTTCTAGTCTATGAGTACATGCCTCGCGGCTCACTCGA 485
Query 766 GGATCATCTTCTAGAAT-TGGCGC-GGAACAAGAAGAAGCCGTTGGATTGGGACACAAGA 823
|||||||| || || | | | | ||| ||| | | || |||||||||||||| ||
Sbjct 486 AGATCATCTCCTCGA-TCTAACACCGGACCAA-AT-A--CCATTGGATTGGGACACGAGG 540
Query 824 ATGA-AAGTTGCGGC-AGGAGCAGCTAGAGGG-CTTGAGTATCTA-CACGAAACAG-CAG 878
|| | || | || | |||||| || | |||| ||||| || || || || | || ||
Sbjct 541 ATTAGAA-TCGCT-CTAGGAGCCGCAA-AGGGTCTTGAATA-CTTGCATGACA-AGGCAA 595
Query 879 ATCCTCCTGTTATCTACAGAGA-CTTCAAGGCCTCAAATATA-TTACTTGAC-GAAGAAT 935
||||||| || ||||||||||| || |||||| | ||||| || || ||| | ||||
Sbjct 596 ATCCTCCAGTGATCTACAGAGATCT-CAAGGCAGCTAATATCCTT-CTAGACAGT-GAAT 652
Query 936 TCAAC-CCAAAGCTT-TCGGATTTCGGTTTAGCTAAGGTTGGTCC-GACCGGTGGAGAGA 992
||||| |||| | || || ||||| ||| | || ||| | || || | | || ||| | |
Sbjct 653 TCAACGCCAA-G-TTATCCGATTTTGGTCTGGCAAAGCTAGGCCCTGTC-GG-GGACAAA 708
Query 993 CT-CATGTGTCAACGAGAGTGATGGGAACATACGGCTATTGTGCGCCTGAGTATGCTCTC 1051
| |||||||| | ||||| |||||||| ||||| |||||||| || |||||| |
Sbjct 709 CAACATGTGTCTTCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTAT-CAGAG 767
Query 1052 A-CAGGACAGCTCACTG-TGAAATCCGATGTATACAGCTTCGGAGTCGTGTTCTTGGAGA 1109
| | || ||| | ||| | ||||||||||| || ||||||||||| || || ||||||
Sbjct 768 AACCGGTCAGTTAACTACT-AAATCCGATGTTTATAGCTTCGGAGTTGTATTGTTGGAGT 826
Query 1110 TGATCACAGGAAGACGAGTCATTGACACAACAAAACC-AA-CTGAAGAACAGAA-CTTAG 1166
|||| || ||| || |||| |||||||| || | ||| || | | |||||||| || ||
Sbjct 827 TGATAACTGGACGAAGAGTTATTGACACTACCAGACCCAAAC--ATGAACAGAATCT-AG 883
Query 1167 TCACTTGGGCG-AGTCCATTGTTCAAAGATAG-GAGAA-AGTTCACGTTAAT-GGCAGAT 1222
| |||||||| | || |||||||||| | ||| | | ||| || | | ||| |||
Sbjct 884 TAACTTGGGCACAA-CCGGTGTTCAAAGA-ACCGAGTAGA-TTCCCGG-AGTTGGCGGAT 939
Query 1223 CC-ATTGCTTGAAGGAAAGTATCCAATA-AAAGGAT-TGTATCAAGC-GCTTGCAGTAGC 1278
|| | | || || ||| || ||| | |||| | || ||||||| | | ||||| ||
Sbjct 940 CCGAGT-CTGGAGGGAGTGT-TCCCGGAGAAAGC-TCTGAATCAAGCAG-TGGCAGTCGC 995
Query 1279 AGCAATGTGTCTT-CAAGAAGAAGCA 1303
|||||||||| || |||||||| |||
Sbjct 996 AGCAATGTGT-TTACAAGAAGAGGCA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5