BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20540.2
Length=3438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929992 jgi|Araly1|929992|scaffold_302449.1 4181 0.0
Ahg474208 jgi|Araly1|474208|fgenesh2_kg.1__4162__AT1G50840.1 2093 0.0
> Ahg929992 jgi|Araly1|929992|scaffold_302449.1
Length=3180
Score = 4181 bits (2264), Expect = 0.0
Identities = 2436/2520 (97%), Gaps = 8/2520 (0%)
Strand=Plus/Plus
Query 677 AAACCTCTTAACAGTGATACGACTCTTGACAATGCCAGCTATAAGAAAACAGCAACCATT 736
||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||
Sbjct 649 AAACCTCTTAACAGTGATACGTCTCTTGACAGTGCAAGCTATAAGGAAACAGCAACCATT 708
Query 737 TCCA-----AA-GTGGAAAAATGCACCAACCTATCGCAAGTCCGTGCAAACCTCAAGAAA 790
|||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 709 TCCATTTCCAATGTGGAAAAATGCACCAACCTGTCGAAAGTCCGAGCAAACCTCAAGAAA 768
Query 791 ATATACAATAGAGTTCGTGTTGTTGATAATGTGTCTAGTGCAAAGGAAACCGTGGCTCTG 850
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 769 ATATATAATAGGGTTCTTGTTGTTGATAATGTGTCTAGTGCAAAGGAAACCGTGGCTATG 828
Query 851 CTCATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTATCCAGGATTGAT 910
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 829 CTGATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTGTCCAGGATTGAT 888
Query 911 GTGAAGACTGAAACACCTGTAGACCATGGGGAGATGATTTGTTTCAGTATCTATTGTGGA 970
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 889 GTGAAGACTGAAACACCTGTGGACCATGGGGAGATGATATGTTTCAGTATCTATTGTGGA 948
Query 971 TCAGAAGCAGATTTTGGAGATGGTAAATCATGTATCTGGGTAGATGTGCTTGGCGAAAAT 1030
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 949 TCAGAAGCAGATTTTGGAGACGGAAAATCATGTATCTGGGTAGATGTGCTTGGCGAAAAT 1008
Query 1031 GGAAGGGATATCCTGGCTGAGTTTAAGCCATTTTTCGAAGACTCATCCATaaaaaaaGTA 1090
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1009 GGAAGGGATATCTTGGCTGAGTTTAAGCCATTTTTCGAGGACTCATCCATAAAAAAAGTA 1068
Query 1091 TGGCATAACTACAGCTTTGATAACCACATCATCAGAAATTATGGAATCAAGCTTTCTGGT 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGGCATAACTACAGCTTTGATAACCACATCATCAGAAATTATGGAATCAAGCTTTCTGGT 1128
Query 1151 TTTCATGGTGATACAATGCACATGGCACGATTGTGGGATTCATCTAGACGGATATCGGGT 1210
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TTTCATGGTGATACGATGCACATGGCACGATTGTGGGATTCATCTAGACGGATATCGGGT 1188
Query 1211 GGTTATTCGCTTGAAGCACTTACAAGTGACCCAAAAGTTCTTGGGGGAACTGAGACAAAG 1270
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1189 GGTTATTCTCTCGAAGCACTTACAAGTGACCCAAGAGTTCTTGGGGGAACTGAGACAAAG 1248
Query 1271 GAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAGATTTTCGGCAAGGGAAAATTG 1330
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1249 GAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAAATTTTCGGTAAGGGAAAATTG 1308
Query 1331 AAAAAAGATGGATCAGAAGGAAAATTGGTGATCATTCCTCCTGTTAAAGAGCTACAAATG 1390
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AAAAAAGATGGATCAGAAGGGAAATTGGTGATCATTCCTCCTGTTAAAGAGCTACAAATG 1368
Query 1391 GAGGATCGAGAAGCTTGGATTTCGTACTCAGCGTTGGATTCAATAAGCACTCTAAAGCTT 1450
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1369 GAGGATCGAGAAGCTTGGATTTCCTACTCGGCGTTGGATTCGATAAGCACTCTAAAGCTT 1428
Query 1451 TATGAGAGCATGAAGAAGCAACTGCAAGCGAAGAAATGGTTTCTTGATGGAAAACTAATT 1510
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1429 TATGAGAGCATGAAGAAGCAATTGCAAGCGAAGAAATGGTTTCTTGATGGAAATCTAATT 1488
Query 1511 TCAAAAAAGAACATGTTTGATTTCTACCAAGAATATTGGCAACCTTTTGGTGAACTTCTT 1570
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 TCAAAACAGAACATGTTTGATTTCTACCAAGAATATTGGCAACCTTTTGGTGAACTTCTT 1548
Query 1571 GCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTATTTGGCGCAGATTGAGATT 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTATTTGGCGCAGATTGAGATT 1608
Query 1631 GTAGCCAAAGCAGAACAAGAAATTGCTGTTTCGAGGTTCCGTAATTGGGCTTCAAAGCAT 1690
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1609 GTAGCCAAAGCAGAACAAGAAATTGCTGTTTCCAGGTTCCGTAGTTGGGCTTCAAAGCAT 1668
Query 1691 TGTCCAGATGCAAAGCATATGAATGTTGGCAGTGACACGCAATTGCGACAACTCTTTTTT 1750
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1669 TGTCCAGATGCGAAGCATATGAATGTTGGCAGTGACTCGCAATTGCGACAACTCTTTTTT 1728
Query 1751 GGTGGCATTTCTAACAGTTGTAATGATGAGGATCTTCCATATGAAAAACTTTTCAAAGTT 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 GGTGGCATTTCTAACAGTTGTAATGATGAGGATCTTCCATATGAAAAACTTTTCAAAGTT 1788
Query 1811 CCCAATGTGGATAAGGTGATTGAAGAAGGAAAAAAGAGAGCCACAAAATTCCGGAATATC 1870
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1789 CCCAATGTGGATAAGGTGATTGAAAAAGGAAAAAAGAGAGCCACAAAGTTCCGGAATATC 1848
Query 1871 AAACTGCATAGGATAAGCGACAGACCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGG 1930
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1849 AAACTGCATAGGATTAGCGACAGGCCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGG 1908
Query 1931 CCCTCTGTTAGTGGAGACACCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGAATATGAC 1990
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1909 CCCTCTGTTAGTGGAGACACCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGGATATGAC 1968
Query 1991 TATATGGAGGGCGTTTTAGATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATT 2050
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TATACAGAGGGCGTTTCAGATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATT 2028
Query 2051 TCGCTACCAGATGAAGTTGTAGAAACACAACACGTC-AATACCTCTGTTGAATCAGACAC 2109
|||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||
Sbjct 2029 TCGCTACCAGATGAAGTTTTAGAAACACAACAC-TCCAATACCACTGTTGAATCAGACAC 2087
Query 2110 ATCTGCTTATGGAACAGCATTTGATGCATTTGGAGGGGGTGAAAGTGGAAAGGAAGCTTG 2169
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 2088 ATCTGCTTATGGAACTGCATTTGATGCGTTTGGAGGGGGTGAAAGTGGAAAGGAGGCCTG 2147
Query 2170 CCATGCTATTGCTGCATTATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTAT 2229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 CCATGCTATTGCTGCATTATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTAT 2207
Query 2230 CCTTCCTTTACAGGGAAGTAACGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAA 2289
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2208 TCTTCCTTTACAGGGAAGTAATGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAA 2267
Query 2290 TATCAACACTGAAACTGGACGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGC 2349
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 TATTAACACTGAAACTGGGCGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGC 2327
Query 2350 ATTGGAGAAAGATCGGTACAAAATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACT 2409
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2328 ATTGGAGAAAGATCGGTACAAGATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACT 2387
Query 2410 TATTGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCGA 2469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2388 TATTGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCAA 2447
Query 2470 AAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTTCCACTCAAGAACAGCCATGAATAT 2529
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2448 AAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTTTCACTCAAGAACAGCTATGAATAT 2507
Query 2530 GTATCCTCATATTCGTGAAGCTGTTGAAAATGGTGAAGTGCTCCTTGAATGGCATCCACA 2589
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2508 GTATCCACATATTCGTGAAGCAGTTGAAAATGGTGAAGTGCTCCTTGAATGGCATCCACA 2567
Query 2590 ACCTGGACAAGAGAAGCCGCCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAG 2649
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2568 ACCTGGACAAGAGAAGCCACCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAG 2627
Query 2650 AAAAGCAAAGATGCTTAACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAG 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2628 AAAAGCAAAGATGCTTAACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAG 2687
Query 2710 AGATTGGAAGGTATCAAGAGAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAG 2769
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2688 AGATTGGAAGGTATCAATAGAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAG 2747
Query 2770 ACAAGAAGTCCGGAAATGGCAAGAACTACGCAAGAAAGAAGCTATACAAAAAGGGTATGT 2829
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2748 ACAAGAAGTCCGGAAATGGCAAGAACTACGCAAGAAAGAGGCTATACAAAATGGGTATGT 2807
Query 2830 ACTCACTTTGTTGGGAAGGGCTCGTAAATTCCCTGAATACCGTTCACGTGCCCAAAAGAA 2889
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2808 ACTCACTTTGTTGGGAAGGGCTCGTAAATTCCCTGTATACCGTTCACGTGCCCAAAAAAA 2867
Query 2890 CCATATCGAGCGAGCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTAT 2949
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2868 CCATATCGAACGAGCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTAT 2927
Query 2950 GTGCGCTATGCTGGAGATATCAAATAATCAACGGCTAAAAGAGCTTGGTTGGAAATTGCT 3009
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2928 GTGCGCTATGCTGGAGATATCAAAAAATCAACGTCTAAAAGAGCTTGGTTGGAAATTGCT 2987
Query 3010 TCTACAAGTTCATGATGAAGTAATCTTGGAAGGACCAAGTGAGTCAGCGGAGAACGCTAA 3069
||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 2988 TCTTCAAATTCATGATGAAGTAATCTTGGAAGGACCAAATGAGTCAGCGGCGAATGCTAA 3047
Query 3070 AGACATAGTTGTGAACTGCATGTCTGAACCCTTCAACGGCAAGAATATTCTCTCAGTCGA 3129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3048 AGACATAGTTGTGAACTGCATGTCTGAACCCTTCAACGGCAAGAATATTCTCTCAGTGGA 3107
Query 3130 CTTATCTGTTGATGCTAAGTGTGCTCAGAACTGGTATGCTGGCAAATAAGAGGAAAATAG 3189
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3108 CTTATCTGTTGATGCTAAGTGTGCTCAGAACTGGTATGCTGGAAAATAAGAGGAAAATAG 3167
Score = 664 bits (359), Expect = 0.0
Identities = 448/489 (92%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 195 TAGCAATCATAAAGGGAAATGCGGGATATTCGACTGCTACTGATTGTGGTGGTTCTCATG 254
|||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 143 TAGCCATCACAAAGGGAAATGCCAGATATTCCACTGCTACTGATTGTGGTGGTTCTCATG 202
Query 255 GGTTTCATCATTCA---GGTCATCAAAGGTCATCCTCTGTTGAGTTTAGTGGAGAGTGGA 311
||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 203 GGTTTCAGCATTCAGGTGGTCATCAACGGTCATCTTCTGTTGAGTTTAGTGGAGAGTGGA 262
Query 312 AACTTAATTTGGGATCTAAGACGGCGAGAATGGTTCCGCCAACTGTGAAACAAGCTGGAG 371
| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 263 AGCTTAATTTGGGATCTAACACGGCGAGAATGGTACCACCAACTGTGAAACAAGCTGGAG 322
Query 372 CTGTAAGTGCTTGGAGGGAGGAAGTCAATAATAAGTTAAGAGGAAGAAATAGAGAATATG 431
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 323 CTGTAAGTGCTTGGAGGGAGGAAGTCAATAATAAGTTAAGAGGAAGAAATGGCGAACATG 382
Query 432 CTAACAACCAGGATGATGCTTTTGGTAATGGCAGTTATATTTTAAAAGGCTTTGTCCCCA 491
||||||||||||||||||||||||||| | |||| || | | |||||||||||||
Sbjct 383 CTAACAACCAGGATGATGCTTTTGGTA--G----TTAT-TTC-AGA-GGCTTTGTCCCCA 433
Query 492 AAATAGATGATGTCCATTCTTATGGAAACGGCCAGAACTTTGATTACAATCTGAAGCCTG 551
|| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AATTAGATGATGTCCAATCGTATGGAAACGGCCAGAACTTTGATTACAATCTGAAGCCTG 493
Query 552 GAACTGATATTACCACACTTGGTAGAGAATTGAATGGCTTTATGCAAACGAATAGTATAA 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 494 GAACTGATATTACCACACTTGGTAGAGAATTGAATGGCTTTATGCAAACGAATAATGTTA 553
Query 612 GAGGATCGGTCGTAGCATTACCAAGCAAGGATATTGAGGTTGGGGAAACAAC-AGACGTG 670
||||| ||||| ||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 554 GAGGACCGGTCATAGCATTACCAAGCAAGGATATTGAGGTTGGGGGGA-AACCAGACGTG 612
Query 671 ACTCTGAAA 679
|||||||||
Sbjct 613 ACTCTGAAA 621
Score = 237 bits (128), Expect = 4e-61
Identities = 134/137 (98%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 8 TTAGCTTCACTTACTACGGCCATGGGGGTTTCTCTTCGTCACTTGTCTCCTTCCTCTTTC 67
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTAGCTTCACTTACTACGGCCATGGGGGTTTCTCTTCGCCACTTGTCTCCTTCCTCTTTC 60
Query 68 TGGGTTTCGCGTCGTCCTCGTGTTTCTTCTTCAATTCTTTCTTTTCTTGTCCCTCGCCGT 127
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TGGGTTTCGCGTCGTCCTCGCGTTTCTTCTTCAATTCTTTCTTTTCTTGTGCCTCGCCGT 120
Query 128 CGAATCCTTTGCACCAG 144
|||||||||||||||||
Sbjct 121 CGAATCCTTTGCACCAG 137
> Ahg474208 jgi|Araly1|474208|fgenesh2_kg.1__4162__AT1G50840.1
Length=3499
Score = 2093 bits (1133), Expect = 0.0
Identities = 2060/2500 (82%), Gaps = 94/2500 (4%)
Strand=Plus/Plus
Query 719 AAGAAAACAGCAACCATTTCCAAAGTGGA-AAAATGCAC-CAACCTATCGCAA-GTCCGT 775
||||| |||| |||||||||||||||| |||| |||| ||||| || ||| ||||||
Sbjct 855 AAGAATACAGTTGCCATTTCCAAAGTGGAGAAAA-GCACTGAACCT-TC-CAATGTCCGT 911
Query 776 GCAAACCTCAAGAAAATATA-CA-ATAGAGTTCGT-GTTGTTGATAATGTGTCTAG-TGC 831
| |||||| | ||||||||| | | || |||| | ||||||||||||||| | || |||
Sbjct 912 GAAAACCTTAGGAAAATATATGACA-AG-GTTC-TCGTTGTTGATAATGTG-CAAGCTGC 967
Query 832 AAAGGAAACCGTGGCTCTGCTCATGAATCAATATAGGAATCTTGTCCATGCTTGCGATAC 891
||||| ||||||||| |||||||||||| |||||||||| ||||||| |||| |||||
Sbjct 968 GAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCATGTCCATTCTTGTGATAC 1027
Query 892 AGAGGTATCCAGGATTGATGTGAA-GACTGAAACACCTGTAGACCATGGGGAGA-TGATT 949
|||||| ||| ||||||| ||||| || ||||| ||||| ||||| || || | | ||
Sbjct 1028 AGAGGTGTCCGGGATTGAGGTGAAGGA-AGAAACGCCTGTCGACCACGGTGA-ATTAATA 1085
Query 950 TGTTTCAGTATCTATTGTGGATCAGAAGCAGATTTTGGAG-ATGGTAAATCATGTATCTG 1008
||||||||||| || ||||| |||||||||||||||| | |||| |||||||| |||||
Sbjct 1086 TGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGG-GTATGGAAAATCATGCATCTG 1144
Query 1009 GGTAGATGTGCTTGGCGAAAATGGAAGGGATATCCTGGCTGAGTTTAAGCCAT-TTTTCG 1067
||| ||||| ||||| |||||||| ||||| | |||| |||||||| || | |||| |
Sbjct 1145 GGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTTTAAACCGTATTTT-G 1203
Query 1068 AAGACTCATCCATaaaaaaaGTATGGCATAACTACAGCTTT-GATAACCACATCATCAGA 1126
||||||| | ||| |||||||| ||||| |||||||| ||| |||| ||||||||| ||
Sbjct 1204 AAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAG-TTTCGATAGCCACATCATTAGG 1262
Query 1127 AATTATGGAATCAAGCTTTCTGGTTTTCATGGTGATACAATGCACATGGCACGATTGTGG 1186
|| ||||||| || ||||||||||||||| || || ||||||||||||||||| |||
Sbjct 1263 AACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACATGGCACGATTATGG 1322
Query 1187 GATTCAT-CTA-GACGGATATCGGGTGGTTATTCGCTTGAAGCACTTACAAGTGACCCAA 1244
||||| | | | |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1323 GATTC-TGC-ACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTACAAGTGACCCAA 1380
Query 1245 AAGTTCTTGGGGGAACTGAGACAAAGGAGGAAGCAGAATTATTTGGTAAAATATCAATGA 1304
||||||||||||| || |||||||||||||||| || || |||||||||| || ||||
Sbjct 1381 AAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAAAATTTCGATGA 1440
Query 1305 AGAAGATTTTCGGC-AAGGGAAAATTGAAAAAAGATGGATCAGAA-GGAAAATTGG-TGA 1361
||| ||||| ||| || || ||| |||||||||||||||| ||| |||||| ||| ||
Sbjct 1441 AGACTATTTTTGGCAAACGG-AAACTGAAAAAAGATGGATCTGAAGGGAAAA-TGGTTG- 1497
Query 1362 TCATTCCTCCTGTTAAAGAGCTACAAATG-GAGGATCGAGAAGCTTGGATTTCGTACTCA 1420
||||||| ||||| ||||||| | | | || |||||||| ||||||||||| || ||
Sbjct 1498 TCATTCCCCCTGTCGAAGAGCTTC-AGCGAGAAGATCGAGAGGCTTGGATTTCATATTCT 1556
Query 1421 GCGTTGGATTCAATAAGCACTCTAAAGCTTTATGAGAGCATGA-AGAAGCAACTGCAAGC 1479
|| |||||| | |||||||| ||||||||||| |||||||||| | ||| |||||||| |
Sbjct 1557 GCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACA-AAGAAACTGCAA-C 1614
Query 1480 -GAAGAAATGGTTTCTTGATGGAAAACTAATTTCAAAAAAGAAC-ATGTTTGATTTCTAC 1537
|| | | ||| |||||||||||| | | ||| | |||| || ||||| ||||| |||
Sbjct 1615 TGATGGATTGGCGTCTTGATGGAAAGCCAGTTT-TAGAAAGGACAATGTTGGATTTTTAC 1673
Query 1538 CAAGAATATTGGCAACCTTTTGGTGAACTTCTTGCCAAAATGGAATCGGAAGGAATGCTT 1597
|| || | ||||| ||| |||||||||||||||| ||||||||| | ||||| || |||
Sbjct 1674 CATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGATACTT 1733
Query 1598 GTAGATAGGGATTAT-TTGGC-GCAGATTGAGATTGTAGCCAAAGCAGAACAAGAAATTG 1655
|||||||| || ||| || || | |||| |||| ||||||||||| |||||| || |||
Sbjct 1734 GTAGATAGAGAGTATCTT-GCTG-AGATAGAGAAAGTAGCCAAAGCCGAACAACAAGTTG 1791
Query 1656 CTGTTTCG-AGGTTCCGTAATTGGGCTTCAAAGCATTGTCCAGATGCAAAGCATATGAAT 1714
||| | | ||||| ||||||||||| || ||| |||| || ||||||||| |||||| |
Sbjct 1792 CTG-GTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAGT 1850
Query 1715 GTTGGCAGTGACACGCAATTGCGACAACTCTTTTTTGGTGGCATTTCTAACAGTTGT-AA 1773
||||||||||||| |||||||| || |||||||||||||||||||| ||||| ||| ||
Sbjct 1851 ATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAG-TGTGAA 1909
Query 1774 TGATGAGGAT-CTTCCA-TATGAAAAACTTTTCAAAGTTCCCAATGTGGATAAGGTGATT 1831
|| |||| | |||||| | |||||| || |||||| |||||||| | |||||||| |||
Sbjct 1910 TGGCGAGG-TGCTTCCAGT-TGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATT 1967
Query 1832 GAAGAAGG-AAAAAAGAGAGCCACAAAATTCCGGAATATCAAACTGCATAGGATAAGC-G 1889
|||| ||| |||||| | ||| || || || || || ||||||||||||||||||| | |
Sbjct 1968 GAAGTAGGCAAAAAA-ACAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAA-CTG 2025
Query 1890 ACAGACCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGGCCCTCTGTTAGTGGAGACA 1949
|||| || || | |||||||| || |||||| || ||||| ||| | ||||| ||
Sbjct 2026 ACAGCCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATG 2085
Query 1950 CCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGAATATGACTATATGGAGGGCGTTTTAG 2009
||||||| |||||||||||||| ||||| ||||| |||| |||||| | || | ||
Sbjct 2086 TTTTGAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAG 2145
Query 2010 ATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATTTCGCTACCAGAT-GAAGTT 2068
||| || ||| |||| || ||| || ||||| || | | | ||||| || ||
Sbjct 2146 ATATTTCTCTGGAAG--AA-GTTGCTGAGGATGA-TG-A--T-G----CAGATCAAACTT 2193
Query 2069 GTAGAAACACAACACGT-CAATACCTCTGTTGAATCAGACACATCTGCTTATGGAACAGC 2127
| |||||||| | || ||| || |||| || | |||||||| |||||||||| |||
Sbjct 2194 -CAAAAACACAA-AAGTCCAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGC 2251
Query 2128 ATTTGATGCATTTGGAGGGGGTGAAAGTGGAAAGGAAGCTTGCCATGCTATTGCTG-CAT 2186
|| || ||| || |||||||||||||| |||||||| || || ||||||||||| | |||
Sbjct 2252 ATATGTTGCCTTCGGAGGGGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGC-GTCAT 2310
Query 2187 TATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTATCCTTCCTTTACAGGGAA 2246
|||||||||||||||| || ||| | || || ||||||||||| ||||| ||||||||||
Sbjct 2311 TATGTGAAGTTTGCTCAATAGATGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAA 2370
Query 2247 GTAACGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAATATCAACACTGAAACTG 2306
|||| || ||||| ||||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 2371 GTAATGTATCAGGCAAAGATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTG 2430
Query 2307 GACGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGCATTGGAGAAAGATCGGT 2366
| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2431 GGCGCTTATCAGCTAGAAGGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGT 2490
Query 2367 ACAAAATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACTTATTGTTGCTGATTATG 2426
|||| || ||| ||||||| |||| |||||||||||| |||| |||| ||||||||||
Sbjct 2491 ACAAGATTCGTAAGGCCTTTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATG 2550
Query 2427 GACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCGAAAGCATGAAGGAAGCTT 2486
| ||| ||||||| || ||||||||||||||| || |||| ||||||||| ||||||||
Sbjct 2551 GGCAGTTGGAACTCAGAATTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTT 2610
Query 2487 TCATAGCTGGTGGAGACTTCCACTCAAGAACAGCCATGAATATGTATCCTCATATTCGTG 2546
||| ||| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2611 TCAAAGCAGGCGGAGATTTCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTG 2670
Query 2547 AAGCTGTTGAAAATGGTG-AAGTGCTCCTTGAATGGCATCCACAACCTGGACAAGAGAAG 2605
||||||| |||||||| | ||||| |||| |||||||||||||||||||| |||| |||
Sbjct 2671 AAGCTGTAGAAAATGG-GCAAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAG 2729
Query 2606 CCGCCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAGAAAAGCAAAGATGCTT 2665
|| || ||||| ||||| ||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 2730 CCACCCGTGCCGTTGTTAAAGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTT 2789
Query 2666 AACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAGAGATTGGAAGGTATCA 2725
||||| || |||||||||||||| || || || ||||| ||||||||||||||||| |||
Sbjct 2790 AACTTTTCAATTGCGTATGGGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTCA 2849
Query 2726 AGA-GAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAGACAAGAAGTCCGGAA 2784
| ||||| ||||| || ||||| || |||||||| |||||||| |||||||| ||||
Sbjct 2850 -GTTGAAGAGGCTCAGGACACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAA 2908
Query 2785 ATGGCAAGAACTACGCAAGAAAGAAGCTATACAAAAAGGGTATGTACTCACTTTGTTGGG 2844
|||||||||| || ||||||||||||||| || | || ||||||| |||||| | ||
Sbjct 2909 ATGGCAAGAAAGGCGTAAGAAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGG 2968
Query 2845 AAGGGCTCGTAAATTCCCTGA---ATACCGTTCACGTGCCCAAAAGAACCATATCGAGCG 2901
|||| |||||| ||| || || ||| || ||||||| || ||||| |||||| | |
Sbjct 2969 AAGGTCTCGTAGATTTCC-GAGGTATAA-GT-CACGTGCGCAGAAGAATCATATCCAAAG 3025
Query 2902 AGCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTATGTGCGCTATGCT 2961
|||||||||||||||||| || ||||||||||| ||||||||||| ||||| || ||| |
Sbjct 3026 AGCAGCAATCAACACTCCAGTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTT 3085
Query 2962 GGAGATATCAA-ATAATCAACGGCTAAAAGA-GCTTGGTTGGAAATTGCTTCTACA-AGT 3018
||| ||||| | | ||||||| | | || || ||||||||||| |||||||||||| | |
Sbjct 3086 GGAAATATCGACA-AATCAACAGTTGAA-GAAGCTTGGTTGGAGATTGCTTCTACAGA-T 3142
Query 3019 TCATGATGAAGTAATCTTGGAAGGACCAAGTGAGTCAGCGGAGAACGCTAAAGACATAGT 3078
|||||||||||| ||||||||||| |||| ||| |||||||||| ||| || ||||||||
Sbjct 3143 TCATGATGAAGTGATCTTGGAAGGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGT 3202
Query 3079 TGTGAACTGCATGTCTGAACCCTTCAACGGCAAG-AATATTCTCTCAGTCGACTTATCTG 3137
|||| |||| |||||| ||||||| ||||| ||| ||||||||||| ||||| |||||||
Sbjct 3203 TGTGGACTGTATGTCTAAACCCTTTAACGG-AAGGAATATTCTCTCGGTCGATTTATCTG 3261
Query 3138 TTGATGCTAAGTGTGCTCAGAACTGGTATGCTGGCAAATA 3177
||||||| || |||||||||||||||||||||| ||||||
Sbjct 3262 TTGATGCAAAATGTGCTCAGAACTGGTATGCTGCCAAATA 3301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129814381503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5