BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20550.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479579 jgi|Araly1|479579|fgenesh2_kg.3__2280__AT3G20550.1 1807 0.0
Ahg932484 jgi|Araly1|932484|scaffold_400472.1 350 2e-95
> Ahg479579 jgi|Araly1|479579|fgenesh2_kg.3__2280__AT3G20550.1
Length=1190
Score = 1807 bits (978), Expect = 0.0
Identities = 1131/1203 (94%), Gaps = 17/1203 (1%)
Strand=Plus/Plus
Query 2 ATCTCTGCGATTATTATTATTCACTCTCTCCTCTTCTCTCCGCCGAAGTAGTCACAGTTC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATCTCTGCGATTATTATTATTCACTCTCTCCTCTTCTCTCCGCCGAAGTAGTCACAGCTC 60
Query 62 CGGCCACCAGGCAAAGAAGAGAGAAAACGACCCTGACTCCAATAATGGCTCCTAGTTCTA 121
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 CGGCCACCAGGCAAAGAAGAGAGAAAACGA-CCTGTCTCCAATAATGGCTCCTAGTTCTA 119
Query 122 GGTCTCCTTCACCACGTACgaagagactgagaagagctcga-g-gag-agaaggaaattg 178
||||||||||||||||||| |||||| |||||||||||| | | ||| ||||||| |||
Sbjct 120 GGTCTCCTTCACCACGTACTAAGAGATTGAGAAGAGCTCAAGGCGAGAAGAAGGAGGTTG 179
Query 179 ggagaagtagagagagagaagatgatggtagagaaagggagaagagaaacagtagggaaa 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GGAGAAGTAGAGAGAGAGAAGATGATGGTAGAGGAAGGGAGAAGAGAAACAGTAGGGAAA 239
Query 239 gggatagagatataggaagagatagggatagggagagaaaaggagaaggagaaagagata 298
||||| ||||||||||||||||| | |||| || |||| | || |||||||||
Sbjct 240 GGGATGGAGATATAGGAAGAGAT-----T-GGGACAG----GGAG-A-GAAAAAGAGATA 287
Query 299 gggaagttggggataagagaagacgatcagggagagaggATACTGAAAAAAGGAGAAGGA 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 288 GGGAAGTTGGGGATAAGAGAAGACGATCAGGGAGAGAGGATACTGAAGAAAGGGGAAGGG 347
Query 359 CAAGAACAGATGATGAGAGATACTCTAGAGGAAGACATGAGAGGTCTACTTCACCGTCAG 418
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 348 CAGGAAGAGATGATGAGAGATACTCTAAAGGAAGACATGAGAGGTCTACTTCACCGTCAG 407
Query 419 ATAGGAGTCACAGGAGTAGTAGGCGTTCACCTGAAAGAGCTATTGCCTCAAGGCATGATG 478
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATAGGAGTCGCATGAGTAGTAGGCGTTCACCTGAAAGAGCTATTGCCTCAAGGCATGATG 467
Query 479 AGGGGTCTAATGCAAGAGGGGGCAGCGAGGAGCCAAATGTCGAGGAAGATTCAGTCGCGA 538
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 468 AGGGGTCTAATGCAAGAGGGGGTGGCGAGGAGCCAAATGTTGAGGAAGATTCAGTCGCAA 527
Query 539 GAATGAGAGCAGTTGAAGAGGCTCTGGCAGCGAAGAAAAAGGAAGAACCATCATTTGAGC 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 528 GAATGAGAGCAGTTGAAGAGGCTCTGGCAGCAAAGAAAAAGGAAGAACCATCATTTGAGC 587
Query 599 TATCAGGGAAACTTGCTGAAGAAACTAACAGATACAGAGGTATCACACTCCTCTTCAATG 658
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 588 TATCAGGGAAACTTGCTGAAGAAACCAACAGATACAGAGGTATCACACTCCTGTTCAATG 647
Query 659 AGCCCCCAGAGGCTAGAAAACCCAGCGAACGATGGAGACTGTATGTTTTTAAGGATGGTG 718
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 648 AGCCCCCGGAGGCTAGAAAACCCAGCGAAAGATGGAGACTATATGTTTTTAAGGATGGTG 707
Query 719 AACCACTGAATGAGCCACTCTGCCTTCACCGCCAAAGCTGCTACCTCTTTGGACGTGAAA 778
||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 708 AACCACTGAATGAGCCACTCTGCCTCCATCGCCAAAGTTGCTATCTCTTTGGACGTGAAA 767
Query 779 GAAGGATTGCCGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCTGTCATTC 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 768 GAAGGATTGCCGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCAGTCATTC 827
Query 839 AGTACCGGGAAATGGAAAAGGAGAAACCAGATGGTATGATGGGGAAGCAAGTGAAGCCTT 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 828 AGTACCGGGAAATGGAAAAGGAGAAACCGGATGGTATGATGGGGAAGCAAGTGAAGCCTT 887
Query 899 ACATAATGGATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ACATAATGGATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCAC 947
Query 959 AAAGATATTATGAGCTTTTTGAGAAAGACACCATAAAGTTTGGCAACAGCAGCCGAGAGT 1018
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 948 AAAGATATTATGAGCTTTTTGAGAAAGACACCATAAAGTTCGGCAACAGCAGCCGAGAGT 1007
Query 1019 ACGTACTGTTGCACGAGAATTCTGCCGAGTGAATGAAATCAGAGTCAAGCAGAAACGAGT 1078
||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 1008 ACGTACTGTTGCACGAGAATTCTGCTGAGTGAATGAAATCAGAGTCGAGCAGCAAGGAGT 1067
Query 1079 AAATCACAAGATT-AGATAGTTGCGTTTCTCAGGGTTTTTAGAGATGTTTGAGCTGCTTC 1137
| ||| ||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 1068 ATATCTCAAGATTTAGATAGTTGCGTTTCTCAGAGATTTTAGAGATGCTTGAGCTGCTTC 1127
Query 1138 ATGTATGCTTTCTACCGTGCTGGTGATAATCTCAGACATCATTTAGAAATCTTTTGCTTG 1197
|| || ||||||| |||||||||| ||||||||| | |||||||||| |||||||||
Sbjct 1128 GTGCCTGTTTTCTACTGTGCTGGTGACAATCTCAGATAACATTTAGAAAGCTTTTGCTTA 1187
Query 1198 CTT 1200
|||
Sbjct 1188 CTT 1190
> Ahg932484 jgi|Araly1|932484|scaffold_400472.1
Length=424
Score = 350 bits (189), Expect = 2e-95
Identities = 305/360 (85%), Gaps = 12/360 (3%)
Strand=Plus/Plus
Query 673 AGAAAACCCAGCGAAC-GAT---GGAGACTGTATGTTTTTAAGGATGGTGAACCACTGAA 728
|||||||||| || || ||| ||||||| |||||||| || |||||||||||||||||
Sbjct 38 AGAAAACCCAACG-ACAGATGGAGGAGACTTTATGTTTTAAAAGATGGTGAACCACTGAA 96
Query 729 TGAGCCACTCTGCCTTCACCGCCAAAGCTGCTACCTCTTTGGACGTGAAAGAAGGATTGC 788
||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||
Sbjct 97 TGAGCCACTCTGCATTCATTACCAAAGCTGCTACCTCTTTGGACGTGAGAGAAAGATCGC 156
Query 789 CGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCTGTCATTCAGTACCGGGA 848
|||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 157 CGACATTCCTACTGATCACCCATCTTGTAGCAAGCAACATGCTGTTATTCAGTACCGCGA 216
Query 849 AATGGAAAAGGAGAAACCAG-ATGGTATGATGGGGAAGCAAGTGAAGCCTTACATAATGG 907
||||||| ||||||| | | | | | || ||||||| ||||||||| ||||
Sbjct 217 GGTGGAAAAAGAGAAACAACCA-GAAACAAAC---AACCAAGTGAGGCCTTACATTATGG 272
Query 908 ATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCACAAAGATATT 967
|||||||||||||||| || ||||| ||||| |||| ||| |||||||||||| | || |
Sbjct 273 ATCTTGGTAGTACCAATAATACTTACATCAACGAAACTCCGATTGAGCCACAACGGTACT 332
Query 968 ATGAGCTTTTTGAGAAAGACACCATAA-AGTTTGGCAACAGCAGCCGAGAGTACGTACTG 1026
| ||||||||||||||||| ||||||| | ||||||||||| |||| |||||||||||||
Sbjct 333 ACGAGCTTTTTGAGAAAGATACCATAAGA-TTTGGCAACAGAAGCCAAGAGTACGTACTG 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5