BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20555.1

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg887811 jgi|Araly1|887811|Al_scaffold_0126_3                       156    1e-37


> Ahg887811 jgi|Araly1|887811|Al_scaffold_0126_3
Length=1083

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 92/96 (96%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  46    ACCCGAGAAACTCATACTGACCCGTCTCTAAAGCTCGAGTCTATGAATGCTGTCTTCCAC  105
             ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  907   ACCCGAGAAACTCATACTGACCCGTCTCTCAAGCTCGAGTCTATGAATGCTATCTTCCAC  966

Query  106   ATAAGCTTCAAGGCCAACAGTTGCGACTACAAATCG  141
             |||||||||| |||||||||||||||||||| ||||
Sbjct  967   ATAAGCTTCAGGGCCAACAGTTGCGACTACACATCG  1002



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11790077001


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5