BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20555.1 Length=333 Score E Sequences producing significant alignments: (Bits) Value Ahg887811 jgi|Araly1|887811|Al_scaffold_0126_3 156 1e-37 > Ahg887811 jgi|Araly1|887811|Al_scaffold_0126_3 Length=1083 Score = 156 bits (84), Expect = 1e-37 Identities = 92/96 (96%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46 ACCCGAGAAACTCATACTGACCCGTCTCTAAAGCTCGAGTCTATGAATGCTGTCTTCCAC 105 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 907 ACCCGAGAAACTCATACTGACCCGTCTCTCAAGCTCGAGTCTATGAATGCTATCTTCCAC 966 Query 106 ATAAGCTTCAAGGCCAACAGTTGCGACTACAAATCG 141 |||||||||| |||||||||||||||||||| |||| Sbjct 967 ATAAGCTTCAGGGCCAACAGTTGCGACTACACATCG 1002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11790077001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5