BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20557.1

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929996 jgi|Araly1|929996|scaffold_302453.1                        673    0.0  


> Ahg929996 jgi|Araly1|929996|scaffold_302453.1
Length=433

 Score =  673 bits (364),  Expect = 0.0
 Identities = 409/431 (95%), Gaps = 2/431 (0%)
 Strand=Plus/Plus

Query  84   AATTATCTAAGAAAGTCTCAATGGAAAACTCAGCACTAAGCAACTGTGTGAGGCGAACAA  143
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  1    AATTATCTAAGAAAGTCTCAATGGAAAAATCAGCACTAAGCAACTGTGTGAGGCGAAC-A  59

Query  144  AT-TTCTCTAATCAACAGAGAACTATGCAAGAGGGTCTAGAAGAGAGTAGTTGGACAATG  202
            || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  60   ATATTCTCTAATCAACAGAGAACAATACAAGAGGGTCTAGAAGAGAGTAGTTGGACAATG  119

Query  203  TACTTTGAAACAGAAGATGGATTAGGCCATTACGATGATTCTTCAATGATGTCAGACGCT  262
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  120  TACTTTGAAACCGAAGATGGATTAGGCCATTACGATGATTCTTCGATGATGTCAGACGCT  179

Query  263  GCTTCTCCTATGGGTTGTGTCGAAGAAGACACCGCTTCATCTCCTTCTAACAGAACCGAG  322
            |||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct  180  GCTTCTCCTATGGGTTCTGTCGAAGAAGACACAGCTTCATCTCCTTCTAATAGAACCAAG  239

Query  323  GGTTACAGTGGAATGGAAGACAATACGATAGAAGAAAAAACCATGAACAATGGTAAGATT  382
            ||| |||||| |||||||||||||||||||||||||||||| |||||| ||  ||| |||
Sbjct  240  GGTCACAGTGAAATGGAAGACAATACGATAGAAGAAAAAACGATGAACGATACTAAAATT  299

Query  383  GAGGAGAAAATATTGAATAAAAATGGGATAAAGATTGAAGAATACTGCGCAGAATTGAAG  442
            |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct  300  GAGGAGAAAAGATTGAATAAAAACGGGATAATGATTGAAGAATACTGCGCAGAATTGAAG  359

Query  443  AAGAGAGGACTTTGCTTAGTCCCTTTGTCGATGTTATCTAACTATATTGGTTGAAACTTT  502
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  360  AAGAGAGGACTTTGCTTAGTCCCTTTGTCGATGTTGTCTAACTATATTGGTTGAAACTTT  419

Query  503  GATTACTCTTT  513
            |||||||||||
Sbjct  420  GATTACTCTTT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31222669023


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5