BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20560.1
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479582 jgi|Araly1|479582|fgenesh2_kg.3__2283__AT3G20560.1 2874 0.0
Ahg474215 jgi|Araly1|474215|fgenesh2_kg.1__4169__AT1G50950.1 1251 0.0
> Ahg479582 jgi|Araly1|479582|fgenesh2_kg.3__2283__AT3G20560.1
Length=1750
Score = 2874 bits (1556), Expect = 0.0
Identities = 1689/1754 (96%), Gaps = 6/1754 (0%)
Strand=Plus/Plus
Query 8 AATCACGAAATCACGACCGCATTagagaagaaagagagagagagagCTT-TTCTTCTTCT 66
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1 AATCACGAAATCACGACCGCATTAGAGAAGAAAGAGAGAGAGAGCTCTTCTTCTTCTTCC 60
Query 67 TCTTCCGCTCACTAGATCTGCTCCCTCTCGCAGTCTCCTGGGTTTTGGCAAATTGCTTTT 126
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 61 TCTTCCGCTCACTAGATCTGCTCTCTCTCGCAGTCTCCTGGGTTTTGGC-AATTGCTTTC 119
Query 127 GATTCTTCTCGGGTGGCAGCTATGGTTTCCTCCACCAAACTCAAATCCGTTGATTTCTAC 186
| |||||||| || |||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 120 GTTTCTTCTC-GGCGGCAGCCATGGTTTCATCCACCAAACTCAAGTCCGTTGATTTCTAC 178
Query 187 AGGAAAATTCCGAGAGATTTGACGGAGGCATCTCTATCAGGCGCTGGGTTATCAATTGTA 246
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 AGGAAAATCCCGAGAGATTTGACGGAGGCGTCTCTATCAGGCGCTGGGTTATCAATTGTA 238
Query 247 GCTGCTCTCTTTATGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGAAGTTAAC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCTGCTCTCTTTATGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGAAGTTAAC 298
Query 307 ACTACCACAGCTGTTATAGTTGACAAGAGCAGTGATGGTGACTTCTTACGCATTGATTTC 366
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 ACTACCACAGCTGTAATAGTTGACAAGAGCAGTGATGGAGACTTCTTACGCATTGATTTC 358
Query 367 AACATCAGTTTTCCTGCTCTTTCCTGTGAATTTGCATCCGTTGATGTGAGCGATGTCTTG 426
||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||
Sbjct 359 AACATCAGTTTTCCTGCCCTTTCATGTGAATTTGCATCTGTTGATGTGAGCGACGTGTTG 418
Query 427 GGAACGAATAGGTTGAATATAACAAAAACAGTTCGCAAGTTTCCAATTGATCCACATTTA 486
||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 419 GGAACAAATAGGTTGAATATAACAAAAACAATTCGCAAGTTTCCAATTGACCCGCATTTA 478
Query 487 AGGTCCACCGGCGCAGAATTCCACTCTGGCCTTGCATTACATAACATAAACCATGGAGAA 546
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 AGGTCCACCGGCGCAGAATTCCACTCTGGCCTTGCATTACATAACATTAACCATGGAGAA 538
Query 547 GAAACTAAGGAAGAGTTTCCTGATGGTGCTATACCATTGACCAGTGCTAGTTTTGAAGCA 606
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 GAAACTAAGGAAGAGTTTCCTGATGGTGCTATACCATTAACCAGTGCTAGTTTTGAAGCA 598
Query 607 TTATCACATCACTTTCCAATATTGGTTGTTAACTTTAATGCACCATGGTGCTACTGGAGT 666
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 599 CTATCACATCACTTTCCAATATTGGTTGTCAACTTCAATGCACCATGGTGCTACTGGAGT 658
Query 667 AATCGTCTGAAACCTTCATGGGAGAAAGCAGCTAATATAATAAAACAAAGATATGATCCT 726
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 AATCGTCTGAAACCTGCATGGGAAAAAGCAGCTAATATAATAAAACAAAGATATGATCCT 718
Query 727 GAAGCTGATGGCCGTGTTCTTCTAGGAAATGTTGATTGCACGGAAGAACCTGCGCTATGT 786
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 GAAGCTGATGGTCGTGTTCTTCTAGGAAACGTTGATTGCACGGAAGAACCTGCGCTATGT 778
Query 787 AAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGACCTT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGACCTT 838
Query 847 AGAGAGGACCATGGACACCACGAACATGAATCTTACTATGGAGATCGGGACACAGACAGT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 839 AGAGAGGACCATGGACACCACGAACATGAATCTTACTATGGAGATCGGGACACGGATAGT 898
Query 907 ATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAGACTCACAAGGTGGCT 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 ATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAGACTCACAAGGTAGCT 958
Query 967 TTGGATGGAAAATCCAATGATACTGTAAA-ACATCTTAAAAAGGGACCAGTTACAGGAGG 1025
|||||||| |||||||||||||| ||||| | |||||||||||| |||||||||||||||
Sbjct 959 TTGGATGGTAAATCCAATGATACCGTAAAGA-ATCTTAAAAAGGCACCAGTTACAGGAGG 1017
Query 1026 TTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGAAATCTCGTGATCTCAGC 1085
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1018 TTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGAAACCTCGTTATCTCAGC 1077
Query 1086 TCATTCAGGAGCTCATTCATTTGATTCTTCTCAAATGAACATGTCGCATGTTGTTTCTCA 1145
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1078 TCATTCAGGAGCTCATTCATTCGATTCTTCTCAAATGAACATGTCGCATGTTGTGTCCCA 1137
Query 1146 TTTTTCGTTTGGGAGGATGATTTCTCCTAGGCTGCTGACCGATATGAAGCGATTGTTGCC 1205
| ||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 1138 TCTTTCGTTTGGGAGGATGATTTCTCCTAGGTTGCTGACCGATATGAAACGGTTGTTGCC 1197
Query 1206 ATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAACATGAGTT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAACATGAGTT 1257
Query 1266 TGGTGCCAATGTCACTATCGAACACTACCTTCAAACAGTCAAAACAGAGGTCATTACAAG 1325
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 TGGTGCCAATGTCACTATCGAACACTACCTTCAAATAGTCAAAACAGAGGTCATTACAAG 1317
Query 1326 AAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCACAGCAGCGT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCACAGCAGCGT 1377
Query 1386 GGCTCAGACTTACTACTTACCCGTTGCGAAGTTTCACTTTGAGCTCTCTCCTATGCAGAT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 GGCTCAGACTTACTACTTACCCGTTGCGAAGTTTCACTTTGAGCTCTCTCCCATGCAGAT 1437
Query 1446 CTTAATAACCGAAAACCCGAAGTCCTTCTCACACTTCATCACAAATCTGTGTGCCATTAT 1505
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTTAATAACCGAAAACCCAAAGTCCTTCTCACACTTCATCACAAATCTGTGTGCCATTAT 1497
Query 1506 TGGTGGTGTTTTCACGGTTGCCGGAATACTAGATTCGATTTTTCACAATACAGTAAGACT 1565
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1498 TGGTGGTGTTTTCACGGTTGCCGGAATACTTGATTCGATTTTCCACAATACAGTAAGACT 1557
Query 1566 GGTAAAAAAGGTCGAACTTGGGAAAAACATTTGATCGTCCACTGGAGGTTAGAATTTTCC 1625
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1558 GATAAAAAAGGTCGAACTTGGGAAAAACATTTGATCGTCCACCGGAGGTTAGAATTTTCC 1617
Query 1626 ATTAATATATAAAACCATAGAAGAACCTCAGACTGTTTACTTTGAATAGCTGATCTACAC 1685
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1618 ATTAATCTATAAAACCATAGAAGAACCTCAGACTGTTTACTTCGAATAGCTGATCTACAT 1677
Query 1686 AGAAAAACTCaaaaaaaGAGAGAATTTTTGTTTGACACAATCTTAGTTTCTTTATGGTTC 1745
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1678 AGAAAACCTCAAAAAA-GAGAGAATTTTTGTTTGACACAATCTTAGTTTCTTTACGGTTC 1736
Query 1746 TTGTTCTATTAAAA 1759
||||||||||||||
Sbjct 1737 TTGTTCTATTAAAA 1750
> Ahg474215 jgi|Araly1|474215|fgenesh2_kg.1__4169__AT1G50950.1
Length=1776
Score = 1251 bits (677), Expect = 0.0
Identities = 1225/1486 (82%), Gaps = 51/1486 (3%)
Strand=Plus/Plus
Query 143 CAGCTATGGTTTCCTCCACCAA-ACTCAAATCCGTTGATTTCTACAGGAAAATTCCGAGA 201
|||| |||||||| ||||||| | |||| ||||||||||||||||||||||| || |||
Sbjct 151 CAGCCATGGTTTCAACCACCAAGA-TCAAGTCCGTTGATTTCTACAGGAAAATCCCAAGA 209
Query 202 GATTTGACGGAGGCATCTCTATCAGGCGCTGGGTTATCAATTGTAGCTGCTCTCTT--TA 259
|||||||| || |||||||| || || ||||| || || ||||||||||| | ||| ||
Sbjct 210 GATTTGACAGAAGCATCTCTCTCTGGTGCTGGTTTGTCCATTGTAGCTGC-C-CTTGCTA 267
Query 260 TGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGG-AAGTTAACACTACCACAGCT 318
|| |||||||||||||||||||||||||||||||||||| || | ||||||| |||| ||
Sbjct 268 TGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGCAA-TCAACACTAGCACATCT 326
Query 319 GTTATAGTTGACAAGAGCAGTGATGGTGACTTCTTACG-CATTGATTTCAACATCAGTTT 377
|| ||||||||||| ||| |||||| ||||||||| | |||||||||||||||||| ||
Sbjct 327 GTAATAGTTGACAAAAGCTCTGATGGGGACTTCTTA-GACATTGATTTCAACATCAGCTT 385
Query 378 TCCTGCTCTTTCCTGTGAATTTGCATCCGTTGATGTGAGCGATGTCTTGGGAACGAATAG 437
|||||| || || |||||||||||||| ||||||||||| || || || ||||| | ||
Sbjct 386 TCCTGCCCTCTCATGTGAATTTGCATCAGTTGATGTGAGTGACGTGTTTGGAACTCACAG 445
Query 438 GTTGAATATAACAAAAACAG-TTCG-CAAGTTTCCAATTGATCCACATTTAAG-GTCCAC 494
|||||||||||| ||||| | || | ||| ||||||||||||| |||||||| | ||||
Sbjct 446 GTTGAATATAACGAAAAC-GATTAGAAAAG-TTCCAATTGATCCGCATTTAAGAG-CCAC 502
Query 495 CGGCGCAGAATTCCACTCTGGCCT-TGCATTACATAACATAAACCATGGAGAAGAA-A-C 551
|| || ||||| ||||| | || | ||||||| ||| ||||||||||| ||| | |
Sbjct 503 TGGTGCGGAATTTCACTCCAG-CTCCGGATTACATCTCATCAACCATGGAGAGGAAGAGC 561
Query 552 -T-AAG-GAAGAGTTTCCTGATGGTGCTATACCATTGACCAGTGCTAG-TTTT--GAAGC 605
| | | || || | || ||| || ||||||||| || ||||| | |||| ||||
Sbjct 562 ATGATGACAATAG--TACTTATGCTGATATACCATTAACTGGTGCT-GCTTTTGAGAAG- 617
Query 606 ATTATCACATCACTTTCCAATATTGGTTGTTAACTTTAATGCACCATGGTGCTACTGGAG 665
||| ||||||| |||| ||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct 618 TTTA-CACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCGCCGTGGTGCTACTGGAG 676
Query 666 TAATCGTCTGAAACCTTCATGGGAGAAAGCAGCT-AATATAATAAAACAAAGATATGATC 724
|||||| |||||||| || |||||||||||| || || |||| | | | |||||| |||
Sbjct 677 TAATCGCCTGAAACCATCTTGGGAGAAAGCATCTCAA-ATAACGAGAGAGAGATATAATC 735
Query 725 CT-GAAGCTGATGGCCGTGTTCTTCTAGGAAATGTTGATTGCACGGAAGAACCTGCGCTA 783
|| ||| |||||| ||||||||| |||||| |||||||||||| ||||||||| | |||
Sbjct 736 CTGGAA-CTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACAGAAGAACCTACTCTA 794
Query 784 TGTAAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGAC 843
|||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 795 TGTAAGAGCAATCATATACAAGGCTACCCATCTATTCGAATTTTCCGCAAAGGCAGTGAT 854
Query 844 CTTAGAGAGGACCAT-GGACACCACGAACATGAATCTTACTATGGAGATCGGGACACAGA 902
||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 855 CTTAGGGAGGACCATGGGA-ATCACGAACATGAATCTTACTATGGAGATCGGGACACAGA 913
Query 903 CAGTATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAG-ACTCACAAGG 961
|| |||| |||||||| || | |||| || |||||| | |||| | ||| |||
Sbjct 914 TAGCCTAGTCAAGATGGTAGAAGAACTGCTCAAACCTATAAAAAAGGAGGA-TCATAAGT 972
Query 962 TGGCTTTGGATGGAAAATCCAATGATACTG-TAAAACATCTTAAAAAGGGACCAGTTACA 1020
||||||||||||| ||||| || || | | | ||| | ||||||||| ||| ||||
Sbjct 973 TGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAAC-TATTAAAAAGGCACCGGTTAGT 1031
Query 1021 GGAGGTTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGA-AATCTCGTGAT 1079
|||||||||||| ||||||| ||||| |||| |||||||||||| || || || || ||
Sbjct 1032 GGAGGTTGTAGAATTGAAGGATATGTCCGTGCAAAGAAGGTTCCCGGCGAA-CTTGTAAT 1090
Query 1080 CTCAGCTCATTCAGGAGCTCATTCATTTGATTCTTCTCAAATGAACATGTCGCATGTTGT 1139
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1091 CTCGGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATGTCGCATATTGT 1150
Query 1140 TTCTCATTTTTCGTTTGGGAGGATGATTTCTCCTAGGCTGCTG-ACCGATATGAAGCGAT 1198
| | ||| | || ||||| | ||| |||| ||| | || || |||||||| ||||
Sbjct 1151 TACCCATCTCTCATTTGGTACAATGGTTTCAGAAAGGTTA-TGGACTGATATGAAACGAT 1209
Query 1199 TGTTGCCATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAAC 1258
| |||| |||||||||| |||||||||||||||| ||||||| | |||||||||||||
Sbjct 1210 TACTGCCTTATCTTGGCCAAAGCCATGACAGGCTGAATGGAAAATCTTTCATAAATCAAC 1269
Query 1259 -ATGAGTTTGGTGCCAATGTCACTATCGAACACTACCTT-CAAACAGTCAAAACAGAGGT 1316
| | |||| || ||||| || || ||||||||| || |||| |||||||||||||||
Sbjct 1270 GAAAA-TTTGAAGCTAATGTTACCATAGAACACTAC-TTGCAAATAGTCAAAACAGAGGT 1327
Query 1317 CATTACAAGAAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCA 1376
|||| |||||||||||||| ||||||| ||| |||| |||||||||||||| || |||||
Sbjct 1328 CATTTCAAGAAGATCCGGTAAAGAACACTCATTGATTGAGGAATATGAATATACGGCTCA 1387
Query 1377 CAGCAGCGTGGCTCAGACTTACTACTTA-CCCGTTGCGAAGTTTCACTTTGAGCTCTCTC 1435
|||||||| |||| | |||| | ||| |||| || ||||||||||||||||||||||
Sbjct 1388 TAGCAGCGTATCTCATAGTTACCA-TTATCCCGAAGCAAAGTTTCACTTTGAGCTCTCTC 1446
Query 1436 CTATGCAGATCTTAATAACCGAAAACCCGAAGTCCTTCTCACACTTCATCACAAATCTGT 1495
| |||||| ||||||||| ||| || || ||||| ||||| ||||||||||||||| | |
Sbjct 1447 CAATGCAGGTCTTAATAAGCGAGAATCCAAAGTCATTCTCGCACTTCATCACAAATGTTT 1506
Query 1496 GTGCCATTATTGGTGGTGTTTTCACGGTTGCCGGAATACTAGATTCGATTTTTCACAATA 1555
| ||||| || || |||||||| ||||| || |||||||||||||| || ||||| || |
Sbjct 1507 GCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTTCAAAACA 1566
Query 1556 CAGTAAGACTGGTAAAAAAGGTCGAACTTGGGAAAAACATTTGATC 1601
|||| ||| |||| |||||| ||||||| |||||||||||||||||
Sbjct 1567 CAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATC 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5