BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20570.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479583 jgi|Araly1|479583|fgenesh2_kg.3__2284__AT3G20570.1 1375 0.0
> Ahg479583 jgi|Araly1|479583|fgenesh2_kg.3__2284__AT3G20570.1
Length=849
Score = 1375 bits (744), Expect = 0.0
Identities = 816/850 (96%), Gaps = 7/850 (1%)
Strand=Plus/Plus
Query 59 AGCTTACGAAATGGCACGAAACCTAAAGAGCATGATGCTTTGTGGGTTTGGTCTCTTGTG 118
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1 AGCTTACGAAATGGCACGAAACCTAAAGAACATGATGCTTTGTGGGTTTGGTCTCGTGTG 60
Query 119 TTTTCTTATGATCGTTGACCGAGCCTACGCTAGAGAGTTTACGGTCGGTGGTGCAACAGG 178
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCTTATGATCGTTGACAGAGCCTACGCTAGAGAGTTTACGGTCGGTGGTGCAACAGG 120
Query 179 TTGGACCGTCCCTTCTGGTTCTCAAGTGTACAGTCAATGGGCAGAACAGAGCAGATTCCA 238
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGGACTGTCCCTTCTGGTGCTCAAGTGTACAGTCAATGGGCAGAACAGAGCAGATTCCA 180
Query 239 AATTGGTGACTCTCTGTTGTTCGTCTACCAATCAAACCAAGATTCAGTGCTCCAAGTCAC 298
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCGGCGACTCTCTGTTGTTCGTCTACCAATCAAACCAAGATTCAGTGCTCCAAGTCAC 240
Query 299 AAGAGACGCTTACGACAGCTGCAACACGGACTCACCAACCGCTAAATTCGCCGATGGCAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGAGACGCTTACGACAGCTGCAACACGGACTCACCAACCGCTAAATTCGCCGATGGCAA 300
Query 359 AACTTCTGTCACGCTGAACCACTCTGGGCCATACTATTTCATTAGTGGAAACAAAGACAA 418
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 AACTTCCGTCACGCTGAACCACTCTGGGCCATACTATTTCATCAGTGGAAACAAAGACAA 360
Query 419 CTGCAAGAAAAACGAGAAGCTTGTGGTCATCGTCATGGCTGATAGAAGCGGCAACAAAAA 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CTGCAAGAAAAACGAGAAGCTTGTGGTCATTGTCATGGCTGATAGAAGCGGCAACAAAAA 420
Query 479 CACCGCATCATCACCGCCGTCCCCAGCCCCAGCTCCCTCAGGAGAATCCGCTCCTTCTCC 538
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 421 CACCACATCATCACCGCCGTCCCCTGCCCCAGCTCCCTCAGGAGAATCCTCTCCTTCTCC 480
Query 539 ACCTGTCTCGGGAACCTTTGAGATGACCCCAGCACCGACGCCTACTACTTCTGAAGACAC 598
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 481 GCCTGTCTCGGGAACCTTTGAGATGACCCCAGCACCGACGCCTACTACTTCTCAAGAAAC 540
Query 599 TCCAAACAGCGCAGCTTCTTC--CTT-ATCATTTGTCGCTGCTCTTCTTGGGGCTGCTCT 655
|||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 541 TCCAAACAACGCAGCTTCTTCTTCTTCATCCTTTGTCGCTGCTCTTCTTGGGGCTGCTCT 600
Query 656 AGCTTCCACTCTATTCCTACACTAAGAAGTTTCTCTTTTGTCTTCCCTTTTCATTCTGTA 715
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 601 AGCTTCCACTCTATTCCTACACTAAGAAGTTTCTCTTTTGTCTTCCGATTTCAATCTGTA 660
Query 716 TCGAGTCTTTTCCCTTTCCCTCTTCATCCAAgtttgtgtcaattggtgtttgttgtttga 775
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGAGTCTTTTCCCTTTCTCTCTTCATCCAAGTTTGTGTCAATTGGTGTTTGTTGTTTGA 720
Query 776 tttttt--accccatttgtttttCATGTATATGAATAAAAGTTCTACTCGTGTGTATTTT 833
|||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 721 TTTTTTTTACCCCATTTGTTTTTTATGTAAATGAATAAAAGTTCTACTTGTGTGTATTTT 780
Query 834 ACTGATGTCATATGTATATAGTAATGGAAGGATAAGAAAAACCAGGCGGATTTT-AATAG 892
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 781 ACTGATGTCATATGTATATAGTAATAGAAGGATAA-AAAAACCAGGCGGATTTTTAATAG 839
Query 893 AACAAGAACC 902
||||||||||
Sbjct 840 AACAAGAACC 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5