BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20580.1
Length=2372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479584 jgi|Araly1|479584|fgenesh2_kg.3__2285__AT3G20580.1 3794 0.0
> Ahg479584 jgi|Araly1|479584|fgenesh2_kg.3__2285__AT3G20580.1
Length=2372
Score = 3794 bits (2054), Expect = 0.0
Identities = 2275/2381 (96%), Gaps = 18/2381 (1%)
Strand=Plus/Plus
Query 1 AGATTTTTCACATTAAACCTTATTCGTTGATCAATCTTCGTCTTTGTTTAAAAGGCTT-G 59
|||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| || |
Sbjct 1 AGATTTCTCACACTAAACCTTATTCGTTGATCAATCTTCATCTTTGTCAAAAAGG-TTCG 59
Query 60 GTTGATTCCTAGtttttttttC--TCTCTCGCTGCCTTGCGGTTCCAGTAATCACAAGGC 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 GTTGATTCCTAGTTTTTTTTTCTTTCTCTCGCTGCCTTGCGGTTCCAGTAATCACAAGGC 119
Query 118 GGTGGGGAAGAAG-AAAAAGATTGATAACGATGAGGGCTATTGACGTTAAAACGGGGATG 176
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTGGGGAAGAAGAAAAAAAATTGATAACGATGAGGGCTATTGACGTTAAAACGGGGATG 179
Query 177 AAGATACCTTGGGACGTACGCTATTCATTAAGTCTATTTATTTTCTTATCATCAATTCTT 236
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 AAGATACCTTGGGACGTACGCTATTCATTAAGTCTATTTATTTTGTTATCATCAATTCTT 239
Query 237 TTTCTTTCCAACGGCCAAGATTATGGAA-TGCCGGGCGAGGATGGAGGAGGAGGAGCTGA 295
||| ||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 240 TTTGTTTGCAACGGCCAAGATTATGGAACT-CCGGGTGAGGA---CGGAGGAGGAGCTGA 295
Query 296 GCCACCGCCGGAGATGGCACATTGTAACGGTATTTTCATGAGCTACAACTTTGGTAGCCG 355
||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct 296 GCCACCGCCTGAGATGGCGCAATGCAATGGTATTTTCATGAGCTACAACTTTGGTAGCCG 355
Query 356 TGAAAGAGAGTACCCGCACGTGAAGAATGTAACCGCCCAATCATGGGCGTTTAAATCGAC 415
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 356 CGAAAGAGAGTACCCGCACGTCAAGAATGTGACCGCGCAATCATGGGCGTTTAAATCGAC 415
Query 416 TGCGATGATTGTAAACGCGGGTAGGGAAGAGCTTAAGGGATGGCAAATGTTCATAGGGTT 475
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 416 TGCGATGATTGTAAACGCGGGTAGGGAAGAACTTAAGGGTTGGCAAATGTTCATAGGGTT 475
Query 476 CCGTCACAAAGAACTGATCGTTTCCGCGACTGGTGCGACTCCTATGGACGGAGATTATCC 535
|||||||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||
Sbjct 476 CCGTCACAAAGAGCTGATCGTTTCTGCTACTGGTGCGGCTCCTATGGACGGTGATTATCC 535
Query 536 TCTAGACGCGAGCAATGGAACCACGTTCGTTGGATCGCCAAACATGGATTTAAAAACCTC 595
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 536 TCTAGACGCGAGCAATGGAACCACGTTTGTTGGATCGCCAAACACGGATTTGAAAACCTC 595
Query 596 TATTGAAACAGCCGGTGATTTCACTCAGATATCTGCGAATATCGAGATCACAGGAACTCT 655
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 596 GATTGAAACCGCTGGTGATTTTACTCAGATATCTGCGAATATCGAGATCACAGGAACTCT 655
Query 656 TTTTGGGGTTTCAAAAGCGGTCACGCCCATGCCAAGAACTATTAAGCTCACCAACGATGG 715
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TTTCGGGGTTTCAAAAGCCGTCACGCCCATGCCAAAAACTATTAAGCTCACCAACGATGG 715
Query 716 TTGGGAATGTCCCGCCGCTAAAAGAAAAGGAGGTAGTATGCACGTGTGTTGCAAGAGAAA 775
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 TTGGGAATGTCCCGCCGCTAAAAGAAAAGGAGGTAGTATGCACGTTTGTTGCAAGAGAAA 775
Query 776 CCCTAAGATCAAGAACAAGATC-GGACTAAAGACAAAGTTTGCACCGAGAAGGTACGGTG 834
||||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 776 CCCTAAGTTCAAGAACAAGA-CTGGACTAAAGACAAAGTTTGCACCGAGAAGGAACGGTG 834
Query 835 ACCTGAACATAGTCTACGATGTTCTGCAATCATTCGACAGCAACTACTTAGCCCAAGTGA 894
| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 835 ATTTGAACATAGTCTACGATGTTCTTCAATCGTTCGACAGCAACTACTTAGCCCAAGTGA 894
Query 895 CCATCGACAATGATAATCCTCTCGGGCGGTTAGACCGTTGGAACCTGACTTTTGAATGGA 954
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CCATCGACAATGATAATCCGCTCGGGCGGTTAGACCGTTGGAACCTGACTTTTGAATGGA 954
Query 955 TGCGAGGAGAGTTTATAAACACTATGCGAGGAGCTTACACTCATAAGAAAGATCCATCGG 1014
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 955 TGCGAGGAGAGTTTATAAACACTATGCGAGGAGCTTACACTCACAAGAAAGATCCATCAG 1014
Query 1015 AATGCCTTTATAGCAAAGCTGGACAGTATTACAAAGACTTAGATTTCTCCCAGGTCATGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1015 AATGCCTTTATAGCAAAGCTGGACAGTATTACAAAGACTTAGATTTCTCTCAGGTCATGA 1074
Query 1075 ATTGTCAGAGAAAACCAGCCATTTCCGATTTGCCTCCTGAGAAGAAGGAAGATAACATGA 1134
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1075 ATTGTCAGAGGAAACCAGCCATTTCCGATTTGCCTCCTGAGAAGAAGGAAGATAACGTGA 1134
Query 1135 CAGGAAAGTTACCTTTCTGTTGCAAAAACGGAACTCTCTTGCCACCTATTATGGATCCTT 1194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 CTGGAAAGTTACCTTTCTGTTGCAAAAACGGAACTCTCTTGCCACCTATTATGGACCCTT 1194
Query 1195 CGAAATCTAGATCTATGTTTCAATTGCAGGTTTTCAAGTTGCCTCCTGACCTAAACAGAA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1195 CGAAATCTAGATCTATGTTTCAATTGCAGGTTTTCAAGTTGCCTCCTGACCTAAATAGAA 1254
Query 1255 CAGCTCTATACCCACCTCAGCATTGGAAAATCGACGGTGTTCTCAATCCTCAGTACAAAT 1314
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1255 CAGCTCTATACCCACCTCAGCATTGGAAAATCGACGGTGTTCTCAATCCGCAGTACAAAT 1314
Query 1315 GCGGGCCACCGGTTCGTGTTGACCCGTCTCAATTCCCTGATCCTAGCGGTCTACTGGCTG 1374
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1315 GCGGGCCACCGGTTCGTGTTGACCCGTCTCAATTTCCTGATCCTAGTGGTCTACTGGCTG 1374
Query 1375 TAACCTACGCCATCTCCAGCTGGCAAGTGGTCTGCAACATAACCAAGCCTAAAGCCCAAG 1434
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1375 TAACCTACGCCATCTCCAGCTGGCAAGTGGTCTGCAACATAACCAAACCCAAAGCACAAG 1434
Query 1435 CCTCAAGATGTTGTGTCTCTTTCTCTGCATTTTACAACAACTCTGCAGTTCCTTGCAACA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CCTCAAGATGTTGTGTCTCTTTCTCTGCATTTTACAACAACTCTGCAGTTCCTTGCAACA 1494
Query 1495 CTTGTGCTTGCGGATGCAATGACATCGATACCGACACTTGCAATGCTAACAGTAACCCGC 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1495 CTTGTGCTTGCGGATGCAATGACATCGATACCGACACTTGCAATGCTAACAGTAACCCAC 1554
Query 1555 TCCTCCTCCCTCCTGACGCTCTCCTTGTTCCGTTCGATAACCGAACCTTAAAAGCTAAAG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1555 TCCTCCTCCCTCCTGACGCTCTCCTTGTTCCGTTCGATAACCGAACCTTAAAAGCTAGAG 1614
Query 1615 CTTGGGCTAAACAAAATCACATGCCAGTACCAAAGAAACTTCCTTGTCCAGATAACTGCG 1674
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1615 CTTGGGCTAAACAAAATCACATGCCAGTACCAAAGAAACTTCCTTGTCCGGATAATTGCG 1674
Query 1675 GAGTCAGCATTAACTGGCACGTTAGCACGGATTACAAAAATGGTTGGACCGCAAGGTTAA 1734
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GAGTCAGTATTAACTGGCACGTTAGCACGGATTACAAAAATGGTTGGACCGCAAGGTTAA 1734
Query 1735 CCGTTTTTAATTGGAGAGATTTCGCGTTTGAGGATTGGTTTGTGGCGATTGATATGGGAA 1794
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1735 CCGTTTTTAATTGGAGAGATTTCGCGTTTGAGGATTGGTTTGTCGCAATTGATATGGGAA 1794
Query 1795 AGGCAGGTCCAGGATATGAAAACGTTTACTCCTTTAATGGAACACGTGTTCCACCAAGCA 1854
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1795 AGGCAGGTCCAGGATATGAAAACGTTTACTCTTTTAATGGAACACGTGTTCCACCAAGCA 1854
Query 1855 ATCGAACCGTTATCTTCCAAGGCTTGCCTGGTATGAACTATCTTGTAGGTCAAGTTAATG 1914
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1855 ATAGAACCGTTATCTTCCAAGGCTTGCCTGGTATGAACTATCTTGTGGGTCAAGTTAACG 1914
Query 1915 GAACAAATCCATTAAGAGACCCTCCCGTGCCCGGAAAGCAACAATCTGTCATCTCCTTCA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GAACAAATCCATTAAGAGACCCTCCCGTGCCCGGAAAGCAACAATCTGTCATCTCCTTCA 1974
Query 1975 CCAAGAAAAACATCAAAGGACTGAATATTCCCGAAGGCGACGGTTTCCCAACAAAGCTTT 2034
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1975 CCAAGAAAAACATCAAAGCACTGAATATTCCTGAAGGCGACGGTTTCCCAACAAAGCTTT 2034
Query 2035 TCTTCAATGGAGAAGAATGTGCGCTTCCAAAACATTTCCCTAAGAAGAGCTCAGGGCATA 2094
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 2035 TCTTCAACGGAGAAGAATGCGCGCTTCCAAAACATTTCCCCAAGAAGAGCTCAGGACATA 2094
Query 2095 GACGCGGTATCAGTGTCTCAATGTCCTTTGTTTTCGCAACAATCGCGGCTTTTGCACTAA 2154
||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 2095 GACACGGTATCAGTGTCTTGATGTCCTTTGTTTTCGCAACAATGGCAGCTTTTGCACTAA 2154
Query 2155 TGATGGATTAATTACTGAGGAGATAACTATACTTACCATTCTTGATCAGtttttttGATC 2214
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 2155 TGATGGATTAATTACTGAGGAGATAACTAAACTTAGCATTCTTGATCAGTTTTTT-GATT 2213
Query 2215 TTCAAATTCTTAAGATTGGTGTTTTGATGATGTTGCTGAACA--GAGGAAGGATCAAAAG 2272
|||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2214 TTCAAATTCTAAAGATTGGTGTTTTGATGATGTTGGTGAACACAGAGGAAGGATCAAAAG 2273
Query 2273 GAGCAGATTGTTATATGATTGATCTAAGT-TGGAAAAATATTGACAATGTTGTATTAATA 2331
||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||
Sbjct 2274 GAGCAGATTGTTATATGATTGATCTAA-TATGGAAATTTATTGACAATGT-GTATTAATA 2331
Query 2332 CTTTTGTTTGGTCTATAAAAGTATTAAAGTGTATGTTGTTC 2372
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 CTTTTGTTTGGTCTATAAAAGTATTAAAGTGTATGTTGTTC 2372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89359714770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5