BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20590.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479585 jgi|Araly1|479585|fgenesh2_kg.3__2286__AT3G20590.1 1129 0.0
Ahg930001 jgi|Araly1|930001|scaffold_302458.1 749 0.0
> Ahg479585 jgi|Araly1|479585|fgenesh2_kg.3__2286__AT3G20590.1
Length=756
Score = 1129 bits (611), Expect = 0.0
Identities = 706/752 (94%), Gaps = 5/752 (1%)
Strand=Plus/Plus
Query 18 AGAAGAAGAACTTGGTCGAAAATGTTGTACCTGCTTCTTCAAGTTCATCTTCACAACTCG 77
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| || |
Sbjct 9 AGAAGAAGAACTTGGTCGAAAATGTTGTACTTGCTGCTTAAAGTTCATCTTCACAGCTGG 68
Query 78 TCTCGGCGCTCTTATCTTATGGCTTAGTCTCCGTGCCAAG-AAACCCAAATGCTCAATCC 136
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 69 TCTCGGCGCTCTTATCTTATGGCTTAGTCTCCGTGCC-GGCAAACCCAAATGCTCAATCC 127
Query 137 AAAACTTTTACATTCCTGCCCTCAGCAAAAACCTAAGCTCACGAGACAATACCACTCTAA 196
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 128 AAAACTTTTACATTCCTGCCCTCAGCAAAAACCTAAGTTCACGAGACAATACCACTCTAA 187
Query 197 ATTTCATGGTTCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCC 256
||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 188 ATTTCATGGTTCGTTGTGACAATCCAAATAGAGACAAAGGAATCTACTACAACGATGTCC 247
Query 257 ACCTTACTTTCTCCACCATCAACACGACCACGACCAATTCATCTGATCTTGTCTTAGTCG 316
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 248 ACCTTATTTTCTCCACCATCAACACGACCAAGACCAATTCATCTGCTCTTGTCTTAGTTG 307
Query 317 CTAACTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTAACTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTC 367
Query 377 AAGTTTGGCCGCTAAACAACCAGACGGTTTTACGAGCTGTTTTGCCTAATGGATCGGCGG 436
|||| ||||||||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 368 AAGTAAAGCCGCTAAACAACCAAACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTG 427
Query 437 TTTTCAGGCTGGATCTCAAGACTCATGTGAGATTCAAGATTGTTTTTTGGAAAACTAAAT 496
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 428 TTTTCAGGTTGGATCTCAAGACTCAAGTGAGATTCAAGATTGTTTTTTGGAAAACTAAAT 487
Query 497 GGTATAGGAGAATTAAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTA 556
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GGTATAGGAGAGTGGAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTA 547
Query 557 ATGAGAAAGAGATTAAGATGGAGAAATCTAATTTTTGGAAAACTCATGGATATTGGAGTG 616
||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 548 ATGAGAAAGAGATTATGATGAAGAAATCTGATTTTTGGAAAACTCAGGGATATTGGAGTG 607
Query 617 AATTTGGTTTTGACGATGATGTTGAACTCACCGGTGATGGAGCTCAAAAGAAAGGAAGTA 676
| |||||| |||||||| | | || ||||||||||||||||||||||| ||||||||||
Sbjct 608 ACTTTGGTGCTGACGATG-T-T-GATCTCACCGGTGATGGAGCTCAAAATAAAGGAAGTA 664
Query 677 AGACGAAGAAATCGGATTCTTCTTTACCATTAAGAAGCTCTTTTCCGATTTTTGTTTTGA 736
||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 665 AGATGAAGAAATCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTTGTGTTTTAA 724
Query 737 TGAATTTGCTCGTATTCTTTGCTATTCGTTAA 768
||||||||||||||||||| ||||||||||||
Sbjct 725 TGAATTTGCTCGTATTCTTCGCTATTCGTTAA 756
> Ahg930001 jgi|Araly1|930001|scaffold_302458.1
Length=698
Score = 749 bits (405), Expect = 0.0
Identities = 519/572 (91%), Gaps = 15/572 (3%)
Strand=Plus/Plus
Query 24 AGAACTTGGTCGAAAATGTTGTACCTGCTTCTTCAAG-TTCATCTTCACAACTCGTCTCG 82
||||| |||| |||| |||||||| |||| ||| ||| |||||||||||| || |||||
Sbjct 41 AGAACGTGGTGGAAACTGTTGTACTTGCTGCTT-AAGCTTCATCTTCACAGCTGGTCTCA 99
Query 83 GCGCTCTTATCTTATGGCTTAGTCTCCGTGCCAAG-AAACCCAAATGCTCAATCCAAAAC 141
| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 100 CCTCTCTTTTCTTATGGCTTAGTCTCCGTGCC-GGCAAACCCAAATGCTCAATCCAAAAC 158
Query 142 TTTTACATTCCTGCCCTCAGCAAAAACCTAAGCTCACGAGACAATACCACTCTAAATTTC 201
|||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 159 TTTTACATTCCTGCCCTCGGCAAAGACCTAAATTCACGAGACAATACCACTCTAAATTTC 218
Query 202 ATGGTTCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTT 261
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 219 ATGGTTCGTTGTGACAATCCAAATAGAGACCAAGGAATCTACTACGACGATGTCCACCTT 278
Query 262 A-CTTTCTCCACCATCAACACGACCACGACCAATTCATCTGATCTTGTCTTAGTCGCTAA 320
| ||| |||||||||||||||||||| || |||||| |||| |||||||||||| |||||
Sbjct 279 AACTT-CTCCACCATCAACACGACCAAGATCAATTCCTCTGCTCTTGTCTTAGTTGCTAA 337
Query 321 CTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGT 380
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CTACACAGTGCCTAAGTTTTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGT 397
Query 381 TTGGCCGCTAAACAACCAGACGGTTTTACGAGCTGTTTTGCCTAATGGATCGGCGGTTTT 440
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 398 AAAGCCGCTAAACAACCAGACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCGGTTTT 457
Query 441 CAGGCTGGATCTCAAGACTC-ATGTGAGATTCAAGATTGTTTTTTGGAAAACTAA-ATGG 498
|||| ||||||| ||||||| | ||||||||||||||| |||||||||||||||| | ||
Sbjct 458 CAGGTTGGATCTGAAGACTCGA-GTGAGATTCAAGATTATTTTTTGGAAAACTAAGA-GG 515
Query 499 TATAGGAGAATTAAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCT-AA 557
||| || || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 516 TAT-GG-GA-TTGAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAA 572
Query 558 TGAGAAAGAGATTAAGATGGAGAAATCTAATT 589
|||||| |||||||||| |||||||| |||
Sbjct 573 A-AGAAAGGGATTAAGATGAAGAAATCTGATT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5