BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20600.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930001 jgi|Araly1|930001|scaffold_302458.1 1090 0.0
Ahg479585 jgi|Araly1|479585|fgenesh2_kg.3__2286__AT3G20590.1 821 0.0
> Ahg930001 jgi|Araly1|930001|scaffold_302458.1
Length=698
Score = 1090 bits (590), Expect = 0.0
Identities = 666/702 (95%), Gaps = 8/702 (1%)
Strand=Plus/Plus
Query 13 TCTTGAAAACaaaaaaaaaaTGAATAATCAAAAT-GAAGACACAGAAGGTGGTCGAAACT 71
|||||||||||||||||||||| |||||| || | |||||||||| ||||| ||||||
Sbjct 2 TCTTGAAAACAAAAAAAAAATG---AATCAAGATCG-AGACACAGAACGTGGTGGAAACT 57
Query 72 GTTGTACTTGCTGCTTAAGCTTCATCTTCACAGCTGGTCTCACCTCTCTTTTCTTATGGC 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTTGTACTTGCTGCTTAAGCTTCATCTTCACAGCTGGTCTCACCTCTCTTTTCTTATGGC 117
Query 132 TTAGTCTCCGTGC-GGACAAACCCAAATGCTCAATCCAAAACTTTTTCATTCCTGCCCTC 190
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 118 TTAGTCTCCGTGCCGG-CAAACCCAAATGCTCAATCCAAAACTTTTACATTCCTGCCCTC 176
Query 191 GGAAAAGACCCAAATTCACGAGACAATACCACTCTAAATTTCATGGTTCGTTGTGACAAT 250
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGCAAAGACCTAAATTCACGAGACAATACCACTCTAAATTTCATGGTTCGTTGTGACAAT 236
Query 251 CCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTTAATTTTTCCACCATCAAC 310
|| |||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 237 CCAAATAGAGACCAAGGAATCTACTACGACGATGTCCACCTTAACTTCTCCACCATCAAC 296
Query 311 ACGACCAAGATCAATTCATCTGCTCTTGTCTTAGTTGGTAACTACACAGTGCCTAAGTTC 370
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 297 ACGACCAAGATCAATTCCTCTGCTCTTGTCTTAGTTGCTAACTACACAGTGCCTAAGTTT 356
Query 371 TATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGCCGCTAAACAACCAG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGCCGCTAAACAACCAG 416
Query 431 ACGGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGTTGGATCTCAAGACT 490
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 417 ACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCGGTTTTCAGGTTGGATCTGAAGACT 476
Query 491 CAAGTTAGATTCAAGATTGTTTTTTGGAAAACTAAGAGGTATGGGGTTGAAGTTGGAGCT 550
| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 477 CGAGTGAGATTCAAGATTATTTTTTGGAAAACTAAGAGGTATGGGATTGAAGTTGGTGCT 536
Query 551 GATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAGAAGAAAGGAATTAAGATGAAGAAA 610
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 537 GATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAAAAGAAAGGGATTAAGATGAAGAAA 596
Query 611 TCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTAGTGTTTTGATGAATTTACTC 670
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 TCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTTGTGTTTTGATGAATTTACTC 656
Query 671 GTATTCTTTGCTATTCGTTAACTTC-ATTAATGGTgttgatt 711
|||||||| || |||||||||||| ||||||||||||||||
Sbjct 657 GTATTCTTGGCGATTCGTTAACTTTGATTAATGGTGTTGATT 698
> Ahg479585 jgi|Araly1|479585|fgenesh2_kg.3__2286__AT3G20590.1
Length=756
Score = 821 bits (444), Expect = 0.0
Identities = 529/567 (93%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 61 TGGTCGAAACTGTTGTACTTGCTGCTT-AAGCTTCATCTTCACAGCTGGTCTCACCTCTC 119
||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 21 TGGTCGAAAATGTTGTACTTGCTGCTTAAAG-TTCATCTTCACAGCTGGTCTCGGCGCTC 79
Query 120 TTTTCTTATGGCTTAGTCTCCGTG-CGGACAAACCCAAATGCTCAATCCAAAACTTTTTC 178
|| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 80 TTATCTTATGGCTTAGTCTCCGTGCCGG-CAAACCCAAATGCTCAATCCAAAACTTTTAC 138
Query 179 ATTCCTGCCCTC-GGAAAAGACCCAAATTCACGAGACAATACCACTCTAAATTTCATGGT 237
|||||||||||| | |||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 139 ATTCCTGCCCTCAGCAAAA-ACCTAAGTTCACGAGACAATACCACTCTAAATTTCATGGT 197
Query 238 TCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTTAATTT 297
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct 198 TCGTTGTGACAATCCAAATAGAGACAAAGGAATCTACTACAACGATGTCCACCTT-ATTT 256
Query 298 T-TCCACCATCAACACGACCAAGATCAATTCATCTGCTCTTGTCTTAGTTGGTAACTACA 356
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 257 TCTCCACCATCAACACGACCAAGACCAATTCATCTGCTCTTGTCTTAGTTGCTAACTACA 316
Query 357 CAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGC 376
Query 417 CGCTAAACAACCAGACGGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGT 476
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CGCTAAACAACCAAACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGT 436
Query 477 TGGATCTCAAGACTCAAGTTAGATTCAAGATTGTTTTTTGGAAAACTAAGA-GGTAT-GG 534
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 437 TGGATCTCAAGACTCAAGTGAGATTCAAGATTGTTTTTTGGAAAACTAA-ATGGTATAGG 495
Query 535 -G-GTTGAAGTTGGAGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCA-GAAGAA 591
| || |||||||| |||||||||||||||||||||||||||||||||||| | || |||
Sbjct 496 AGAGTGGAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTAATGA-GAA 554
Query 592 AG-GAATTAAGATGAAGAAATCTGATT 617
|| || ||| |||||||||||||||||
Sbjct 555 AGAGA-TTATGATGAAGAAATCTGATT 580
Score = 176 bits (95), Expect = 2e-43
Identities = 158/186 (85%), Gaps = 13/186 (7%)
Strand=Plus/Plus
Query 511 TTTTTGGAAAACTAAGAGG-TA-TGGGGTTGAAGTTGGAGCT---GATGTTGAAGTCAAC 565
||||||||||||| || || || ||| | ||| |||| ||| |||||||| ||| |
Sbjct 579 TTTTTGGAAAACTCAG-GGATATTGGAG-TGACTTTGGTGCTGACGATGTTGATCTCACC 636
Query 566 GGTGATGGAGTTAAAGCTCAGAAGAAAGGAATTAAGATGAAGAAATCTGATTCTTCTTTT 625
|||||| | | |||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 637 GGTGAT-G-G----AGCTCAAAATAAAGGAAGTAAGATGAAGAAATCTGATTCTTCTTTT 690
Query 626 CCATTAAGAAGCTCTTTTCCGATTAGTGTTTTGATGAATTTACTCGTATTCTTTGCTATT 685
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||
Sbjct 691 CCATTAAGAAGCTCTTTTCCGATTTGTGTTTTAATGAATTTGCTCGTATTCTTCGCTATT 750
Query 686 CGTTAA 691
||||||
Sbjct 751 CGTTAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5