BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20610.1

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479587 jgi|Araly1|479587|fgenesh2_kg.3__2288__AT3G20610.1         375    2e-103


> Ahg479587 jgi|Araly1|479587|fgenesh2_kg.3__2288__AT3G20610.1
Length=591

 Score =  375 bits (203),  Expect = 2e-103
 Identities = 222/231 (96%), Gaps = 1/231 (0%)
 Strand=Plus/Plus

Query  235  GGAATCTATTACGAAGACCTTCACTTATCTTTCTCCACACGTATCAACAACTCCTCTCTT  294
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  192  GGAATCTATTACGACGACCTTCACTTATCTTTCTCCACAAGTATCAACAACTCCTCTCTT  251

Query  295  -CTTGTGGCTAACTACACAGTGCCAAGATTCTATCAAGGACACGAGAAGAAGGCCAAGAA  353
             | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  CCATGTGGCTAACTACACAGTGCCAAGATTCTATCAAGGACACGAGAAGAAGGCCAAGAA  311

Query  354  GTGGGGACAGGCCTTGCCTTTTAACAACCAGACGGTTATTCAAGCGGTTTTACCTAATGG  413
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct  312  GTGGGGACAGGCCTTGCCTCTTAACAACCAGACGGTTTTTCAAGCGGTTTTGCCTAATGG  371

Query  414  CTCGGCGATTTTTCGTGTGGATTTGAAGATGCAGGTGAAATACAAAGTCAT  464
            ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  372  CTCGGCGATTTTTCGTGTGGAATTGAAGATGCAGGTAAAATACAAAGTCAT  422


 Score =  259 bits (140),  Expect = 2e-68
 Identities = 174/190 (92%), Gaps = 3/190 (2%)
 Strand=Plus/Plus

Query  481  AGGTACAAAT-TAAAGGCTAGTGTGAATCTTGAAGTCAACGAGGATGGAGCCACTAAAGT  539
            ||||| ||||  |||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct  404  AGGTA-AAATACAAAGTC-ATTGTGAATCTTGAAGTCAACGAGGATGGAGCCACTAAAGT  461

Query  540  CAAGGACAAAGAGGATGGGATTAAGATGAAGATATCAGATTCGTCTCCACAACGACTAAC  599
            |||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||
Sbjct  462  CAAGAACAAAGAGGATGGGATTAAAATGAAGATATCAGATTCTTCTCCGCGACGACTAAC  521

Query  600  ATTTTTCCAAGTTTGCTTTTCGATTATTTGTGTTTTGATGAATTGGCTCATCTTCTTGGC  659
             ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct  522  CTTTTTCCAACTTTGCTTTTCGATTATTTGTGTTTTGATGAATTGGCTCGTCTTTTTGGC  581

Query  660  TATTCGTTAA  669
            |||| |||||
Sbjct  582  TATTTGTTAA  591


 Score =  217 bits (117),  Expect = 1e-55
 Identities = 138/148 (93%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  59   TCCTCTATGTATCGTTTCTCCTGGCTTTATGTCTCTGG-TTATCTACTTTGGTCCACCAC  117
            ||||||||||||||||||| |||||||| | ||||||| ||| |||||||||||||| ||
Sbjct  47   TCCTCTATGTATCGTTTCTTCTGGCTTTCTTTCTCTGGATTA-CTACTTTGGTCCACGAC  105

Query  118  ATACCTAGATGCTCAATCCATTACTTTTACATTCCTGCCCTAAACAAATCCCTCATTTCA  177
            |||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct  106  ATACCTCGATGCTCAATCCATTACTTTTACATTCCTGTCCTAAACAAATCTCTCAATTCA  165

Query  178  TCAGACAACACCACTCTCAACTTCATGG  205
            ||||||||||||||||||||||||||||
Sbjct  166  TCAGACAACACCACTCTCAACTTCATGG  193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24551158548


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5