BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20620.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479588 jgi|Araly1|479588|fgenesh2_kg.3__2289__AT3G20620.1 2239 0.0
> Ahg479588 jgi|Araly1|479588|fgenesh2_kg.3__2289__AT3G20620.1
Length=1721
Score = 2239 bits (1212), Expect = 0.0
Identities = 1580/1752 (90%), Gaps = 48/1752 (3%)
Strand=Plus/Plus
Query 17 AACACGAATTGTTTCTTCTTCTCCA-AACACGTGTTCTTCAAATTCGCTCATATTATTCT 75
||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 1 AACACGACTTGTTTCTTCTTCT-CACAACACGTGTTCTTCAAATTCGCTCGTATTATTCT 59
Query 76 CGATTCCCACAAACAGAAAAAGAAGATACTAAAAATTATAAAATCCCGATAAT-AGAATC 134
||||| || | || | ||||| || | | |||||||||||||||||||| || ||||||
Sbjct 60 CGATT-CC-C-AA-A-AAAAA-AA-A-A--AAAAATTATAAAATCCCGAT-ATCAGAATC 108
Query 135 ATGAAATTGTTTCC-GTTTATGGGTGTTTTAATTGCGTCTAATCGGAATCTCTTGCCGTT 193
|||||||||||||| | || |||| ||||||||||||| |||||||||||||||||||||
Sbjct 109 ATGAAATTGTTTCCTGATT-TGGGGGTTTTAATTGCGTTTAATCGGAATCTCTTGCCGTT 167
Query 194 ATCGTCTGCTTA-TCA-GGGTAAT-CAAAGAGGCACTACTGATTTCATGGATCATTGTGA 250
||| ||| | || | | | || | ||||||||||| ||| ||||||||||||| ||
Sbjct 168 ATCTTCTAC-TACTTATGAGT--TCCAAAGAGGCACGACTAATTTCATGGATCA--ATG- 221
Query 251 TTGAAGTTTTGAGAGTTGGTGAATCAGCAAGCTTCTGTTACAGAGCCTTAGCAACAGAAA 310
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 222 -TG-A---CTGAGAGTTGGTGAATCAGCAAGCTTCTGTTGCAGAGCCTTAGCAACAGAAA 276
Query 311 GCAAACAGAAAATGGTCAAAACTCGTGCTCAGCGTATCAAGCGGATGAGTGTTGTAGATG 370
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 277 GCAAACAGAAAATGGTCAAAACTCGTGCTCAGAGTATCAAGCGGATGAGTGTTGTAGATG 336
Query 371 CACTTTGCATCCGGTCTCAGATCTCGGTCAAATCTGCCCGGTATTGTAAGACAGTTAGTA 430
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 337 CACTTTGCATCCGGTCTCAGATCTCAGTCAAATCTACCCGGTATTGTAAGACAGTTAGTA 396
Query 431 AGCACCTTGCAAAGCTACAGTTAGCAGAATCTGGAAAGAATTCATCATTGGTAGTCTGTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AGCACCTTGCAAAGCTACAGTTAGCAGAATCTGGAAAGAATTCATCATTGGTAGTCTGTC 456
Query 491 CTAG-TATGGGGAAAACAATGAAGTTGTATTCGATGGATGCAAAGAGATGTAAACTTTCC 549
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 457 CT-GCTATGGGGAAAACAATGAAGTTGTATTCGATGGATGCAAGGAGATGTAAACTTTCC 515
Query 550 CTCCTCAGTACTATTGATCCATCTCAAAGAACCCCTGAGGTGTTCATGTACATGATATCA 609
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 516 CTCCTCAGTACTATTGATCCATCTCAAAGAAGCCCTGAGGAGTTCATGTACATGATATCA 575
Query 610 TCCTATAACGGGATCATCTGCTGTGTGAATATGATTTATGATGAAGACGTAGAAAACAAG 669
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TCCTATAATGGGATCATCTGCTGTGTGAATATGATTTATGATGAAGACGTAGAAAACAAG 635
Query 670 TTCTGTGATCTCCAGATATGGATATGCAACCCCAT-TACAAAGGAGACTCTCCTTCTTCC 728
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 636 TTCTGTGATCTCCAGATATGGATATGCAACCCT-TGTACAAGGGAGACTCTCCTTCTTCC 694
Query 729 CCAAGGAACACCCTCATTTGAGTTTGAGCCTAGTATAGGAGTGGCTTATGGCTCTGATGT 788
||||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||
Sbjct 695 CCAAGGAACACCCTCGTTTGAGTTTGAGCCAAGCATTGGAGTAGCTTATGGCTCTGATGT 754
Query 789 AAGTGACTACAA-AGTTTACCGTATTTTTTGCACTGGGAAGATAATTCCTGAAGAAAGAG 847
|||||||| | | ||| |||||| || ||||||| |||||||||||||||||||| |
Sbjct 755 CAGTGACTATAGGATTTT-CCGTATATTCCGCACTGGAAAGATAATTCCTGAAGAAAGGG 813
Query 848 GACCTGCAGAGGGATTTTATGTTCAAGAAGGTCGGTTTTTTACAAAATACGGTCAC-TCT 906
||||||| ||||||| |||| ||||||||||||||| ||||||||||||| ||||| | |
Sbjct 814 GACCTGCGGAGGGATATTATTTTCAAGAAGGTCGGTATTTTACAAAATACAGTCACGT-T 872
Query 907 TTAGCCTATGAATGCGAGGTTTATTCGTCCAGCACGGGTTCTTGGAAAAACATTGGCACC 966
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 873 TTAGCTTACGAATGCGAGGTTTATTCGTCCAGCACGGGTTCTTGGAAAAACATCGGCCCC 932
Query 967 GTGCCTTGTCTTCCTATGAGTTGTAGTCTTAGGCCATACAGAAGAACTGGACATATTTTT 1026
||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||| |||
Sbjct 933 GTGCCTTGTGTTCCTATGAGTTGTGGTCTTAGGCCATTCAGAAGAACTGGTCATATATTT 992
Query 1027 GTCGGA-GGAAAAGTTTACTGGCTCGTTTCTTTAGATGCGCCAGGTAAGATTCTCTCAGT 1085
|||| | |||||||| || ||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 993 GTCG-ATGGAAAAGTGTATTGGCTTGTTTCTTTAGATGGGCCTGGTAAGATCCTCTCAGT 1051
Query 1086 AGATTTGGAAGGGAAATTCGAGGTTATAAACTTGCCTGCATATGCAGATGGACTAAGAGA 1145
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1052 AGATTTGGAAGGGAGATTCGAGGTCATAAACTTGCCTGCATATCCAGATGGACTAAGAGA 1111
Query 1146 AGACGAGCAGATTACAGAAGCTAGTCATTTGATAAACCTGAAAGGTTCTCTTGGGTTGCT 1205
|| ||| |||| ||||| || ||||||||| ||||||||||||||||||| ||||||||
Sbjct 1112 GGAAGAGAAGATCACAGAGGCAAGTCATTTGGTAAACCTGAAAGGTTCTCTCGGGTTGCT 1171
Query 1206 CGTTCTACATCCAGAGAACATGGATGTCTGGGTTTGGAAACACGACGGCGAGAGATATAG 1265
||| |||| ||||| ||||||||| | ||||||||||||||||||||| ||| ||||||
Sbjct 1172 TGTTATACAACCAGATAACATGGATCTATGGGTTTGGAAACACGACGGCCAGAAATATAG 1231
Query 1266 TTGGGTTTTTCAATTTAAAGATGTTGTTCCAATAAAAGATGATGAATTGATTTTAGCCGT 1325
||||| | || |||| | |||| ||||||||||||| |||| ||||||||| |||||||
Sbjct 1232 TTGGGATATTGAATTGAGCGATGATGTTCCAATAAAAAATGACGAATTGATTATAGCCGT 1291
Query 1326 AACTGCATTAGATAACAAGATCATATGTGTGAATGAAACACATTGGCGTATATATGATAT 1385
||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1292 AACTGCATTCGATAACAAGATCATATGTGTGAATGATACACACTGGCGTGTATATGATAT 1351
Query 1386 GGAGACTGAAAAGTGGAAGAGAAGAAAGAGCCCTCGTACTGGATTTAGGAATCCTGTTGT 1445
||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| | |
Sbjct 1352 GGAGACTAAAAAGTGGAAGAGAAGAAGGGGCCCTCGTACTGGATTTAGGAATCCTGCTAT 1411
Query 1446 GCTCCCATTCACCGAAAGCGTTCTTCCTTGTAACGGCGGTGTGAAACAGTAGAAGGAAAC 1505
| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1412 GTTCCCATTCACCGAAAGCGTTCTTCCATGTAATGGCGGTGTGAAGCAGTAGAAGGAAAC 1471
Query 1506 CGCAAGAGTATCGATGTGATGCGGAGATTGTTGAAT-TG-GTCAGGCTATGTGTTTCTCT 1563
|||| ||| |||||| ||||| |||| |||||||| || | ||| |||||||||||||
Sbjct 1472 AGCAACAGTGTCGATGGGATGCAGAGAATGTTGAATCTGAG--AGGTTATGTGTTTCTCT 1529
Query 1564 TAGGAACTTTCATATTGGtttctgttttaggactatttttctaca-gt--cagtttttgt 1620
||||||| |||||||||||||| |||||| |||| ||||| | | || ||||||||||
Sbjct 1530 TAGGAACCTTCATATTGGTTTCGGTTTTAAGACTTTTTTTTTGCTTGTGTCAGTTTTTGT 1589
Query 1621 ctct-ttttaagattttCAACTTGGTTTATGCATTTTCTTATTTTAAGACTTCATTGAAA 1679
|||| |||| | ||||||||||||||||||| |||| ||||||||||||||||||| |
Sbjct 1590 CTCTCTTTTTTCAATTTCAACTTGGTTTATGCAGTTTCATATTTTAAGACTTCATTGATA 1649
Query 1680 CTAAATAAGCTGTGGTTGCTTTGTCTCTGGACAAAGTTTTAATGTTATAAAAACCATTAA 1739
||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1650 CTAAATAAGTTGTGGTTGCTTCGTCTCTCAACAAAGTTTTAATGTTATAAAAACCATTAA 1709
Query 1740 TGTTCTTATGCT 1751
||||||||||||
Sbjct 1710 TGTTCTTATGCT 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5