BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20640.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342218 jgi|Araly1|342218|fgenesh1_pg.C_scaffold_3001981 1576 0.0
> Ahg342218 jgi|Araly1|342218|fgenesh1_pg.C_scaffold_3001981
Length=1314
Score = 1576 bits (853), Expect = 0.0
Identities = 989/1052 (94%), Gaps = 20/1052 (2%)
Strand=Plus/Plus
Query 101 ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTAtcttcttcttct 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTATCTTCTTCTTCT 60
Query 161 tcaccatcttcttcttcttcCATGAGAGCAAGCTCTATTGAATCTGGTGGTTCTGCTGTT 220
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCACCATCTTCTTCATCTTCCATGAGAGCAAGCTCTATTGAATCCGGTGGTTCTGCTGTT 120
Query 221 TTCCATG---ATAAG------C-T--TCATCATCATTCTTTAG---CTACTGATCACCAT 265
||||||| ||||| | | ||||||||||||||||| |||||||||| |||
Sbjct 121 TTCCATGATCATAAGCTTCATCATCATCATCATCATTCTTTAGCTACTACTGATCATCAT 180
Query 266 CTTCAGATGATTGGTTTAGGACTTTCTTCACAATCACCTGTTGATCAATGGAACCAATCT 325
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCAGATGATTGGTTTAGGGCTTTCTTCACAATCACCTGTTGATCAATGGAACCAATCT 240
Query 326 CTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTC 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTC 300
Query 386 AATTTAGATGCCACTTCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAG 445
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTTAGATGCGACTTCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAG 360
Query 446 CTGCAAGAATCTGATTCCTCTCACCATCATCAAGCTTTGTGGCGAGATCCACAAAGCGAT 505
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 CTGCAAGAATCTGATTCCTCTCACCAGCACCAAGCTTTGTGGCGAGATCCACAAAGCGAT 420
Query 506 TTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGCGGGTTTTTCTTAGATCATCAGTTC 565
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 TTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGTGGGTTTTTCTTAGATCATCAATTC 480
Query 566 AGTCCTCATGGTAGCTCAAGTACCGACAGTAGCACAGTAACATGTCAAGGTTTCGCTGTT 625
|| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 AGCCCTCACGGGAGCTCAAGTACCGACAGTAGCACAGTGACATGTCAAGGTTTCGCTGTT 540
Query 626 GACAACTCGTCAAACGCCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGT 685
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACAACTCTTCCAACACCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGT 600
Query 686 ATGTTTCATCATCAGCAAGCAGGTGGTTTTGGCTCTTCTGATCAACAACCGTCGAGGAAT 745
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 601 ATGTTTCATCATCAACAAGCAGGTGGTTTTGGCTCTTCCGATCAACAACAGTCGAGGAAT 660
Query 746 CATCAACAGTCA-TCTCTTGGCTATTCTCAGTTTGGATCATCCACCGGAAACTATGATCA 804
|| || ||| || ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAGCAGCAG-CAATCTCTCGCCTATTCTCAGTTTGGATCATCCACCGGAAACTATGATCA 719
Query 805 AATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCGCCGCCAAAACCACA 864
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 720 AATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCACC---AAAACCACA 776
Query 865 CAGTCCTTTGAGATTCTCTAATAACGCAACGTTTTGGAACCCCGCGGCTGCGGGAAACGC 924
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 777 CAGTCCTTTGAGATTCTCTAACAACGCAACGTTTTGGAACCCTGCGGCTGCCGGAAACGC 836
Query 925 CGGTGCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCGGCGTTACAACCGCCGCA 984
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 CGGTCCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCTGCGTTACAACCGCCGCA 896
Query 985 GATTCATCCGCAGAGTTTTGACGAACAACCAAAGAATATATCGGAGATTAGAGATTCAAG 1044
|||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 897 GATTCACCCGCCGAGTTTTGACGAACAACCAAAGAATATAGCGGAGATTCGAGATTCGAG 956
Query 1045 TAGCAACGAAGTAAAGAGAGGAGGAAACGATCATCAGCCGGCGGCGAAAAGAGCTAAGAG 1104
||||| ||||||||||||||||||| | |||| ||||||||||| ||||||| ||||||
Sbjct 957 TAGCAGCGAAGTAAAGAGAGGAGGAGGCCATCAGCAGCCGGCGGCAAAAAGAGTTAAGAG 1016
Query 1105 CGAAGCAGCGTCTCCGTCACCAGCTTTCAAGA 1136
|||||||||||||||||| || ||||||||||
Sbjct 1017 CGAAGCAGCGTCTCCGTCGCCCGCTTTCAAGA 1048
Score = 477 bits (258), Expect = 1e-133
Identities = 266/270 (99%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1196 AAGACTGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 AAGACTGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAA 1104
Query 1256 CAAGTTTCTGCTCTGAGCAACCCATACATGAAAAGTGGAGCTTCTTTACAACATCAACAG 1315
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1105 CAAGTTTCAGCTCTGAGCAACCCATACATGAAAAGTGGAGCCTCTTTACAACATCAACAG 1164
Query 1316 AGTGATCATTCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTA 1375
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AGTGATCATCCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTA 1224
Query 1376 TGCTTAGTGCCAGTTTCAAGCACATTTCCAGTGACACACGATACTACAGTAGATTTCTGG 1435
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1225 TGCTTAGTGCCAGTTTCAAGCACATTTCCAGTGACACACGATACTACTGTAGATTTCTGG 1284
Query 1436 ACTCCTACATTTGGTGGGACTTTTAGATAG 1465
||||||||||||||||||||||||||||||
Sbjct 1285 ACTCCTACATTTGGTGGGACTTTTAGATAG 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5