BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20650.1 Length=1633 Score E Sequences producing significant alignments: (Bits) Value Ahg479592 jgi|Araly1|479592|fgenesh2_kg.3__2293__AT3G20650.2 2001 0.0 Ahg314476 jgi|Araly1|314476|fgenesh1_pm.C_scaffold_1003256 1114 0.0 > Ahg479592 jgi|Araly1|479592|fgenesh2_kg.3__2293__AT3G20650.2 Length=1400 Score = 2001 bits (1083), Expect = 0.0 Identities = 1187/1236 (96%), Gaps = 11/1236 (1%) Strand=Plus/Plus Query 147 TTGTTATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCA 206 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 34 TTGTAATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGGTCCTCCTCCTTCTTCCA 93 Query 207 GATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATT 266 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 94 GATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAAACCACAAAGAATT 153 Query 267 TTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAG 326 ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 154 TTGCCCGGAAAGTTGCTGATCATTACAGTCGGAGAACTAACCAAACATTGGAAGAGCGAG 213 Query 327 AAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGATCC 386 |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 214 AAGCTAGTCCCATCATCCATTTGAAGAAGCTTAACAATTGGATTAAAAGTGTGTTGATCC 273 Query 387 AGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATT 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 AGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATT 333 Query 447 TGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGT 506 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 334 TGATCAAATGGGATAAGGCGAGAATCGGGTACTATGTTGGAATCGATATTGCTGAAGGGT 393 Query 507 CGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAA 566 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 394 CGATTGAAGATTGTCGTACGCGTTATAATGGTGATGCAGACCATCATCAACGGCGTAAAA 453 Query 567 AGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGA 626 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 AGTTCAGTTTTCCGTCCCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGA 513 Query 627 TTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCAT 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 TTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCAT 573 Query 687 GGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGTCCAG 746 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 574 GGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGCCCAG 633 Query 747 GAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATaaaaaaaCTCAGAGAAG 806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 634 GAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATAAAAAAACTCAGAGAAG 693 Query 807 CTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCC 866 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 694 CTGAAGGTTTGGAGATTGGTAATAGTGTATACTGGATTCGTTTTGGTGAAGAGTATTCCC 753 Query 867 AAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTGTTTCATCTCGAGGATG 926 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 754 AAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTATTTCATCTGGAGGATG 813 Query 927 CTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCGGAGGAGT 986 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 814 CTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCAGAAGAGT 873 Query 987 ATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAA 1046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 874 ATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAA 933 Query 1047 AGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAGCAATGATC 1106 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 934 AGCCAGAGTTTGTGGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAACAATGATC 993 Query 1107 AGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCTCTTTTGTCTTGA 1166 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 994 AGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATCTATACCTCTCTTTTGTCTTGA 1053 Query 1167 GAAAGAGGGGAGAATCAGATGGAGCTCGAAGGAGCGGGCGGAGGAAGAATGGGAAAATGA 1226 | |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1054 GGAAGAGGGGAGAACCAGATGGAGCTCGAAGGAGCGGACGGAGGAAGAATGGGAAAATGA 1113 Query 1227 ACTTGTCGAAAGATGATGTTTTGTATATCGATAGCTGAAGTGTCAAAGAGTGTTTCTTTT 1286 |||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| Sbjct 1114 ACTTATCGAAAGACGATGTTTTGTATATCGATAGCTGAAGTGTAAAAGAATGTTCCTTTT 1173 Query 1287 A--CTCTT-AG------A-GTCTCTGTTTTTGGTCTCACTTCGTTGTCTTACGTTTTTGG 1336 | | | || | ||||||||||| |||||||||||||| |||||||||||||| Sbjct 1174 ATACACCAGAGTGTCTCAAGTCTCTGTTTT-GGTCTCACTTCGTTCTCTTACGTTTTTGG 1232 Query 1337 CCATTTGAATTGAGAGATTGCATTACTTTAGAAAAA 1372 |||||||||||||||||||| ||||||| |||||| Sbjct 1233 CCATTTGAATTGAGAGATTGTTTTACTTTCGAAAAA 1268 Score = 128 bits (69), Expect = 1e-28 Identities = 77/81 (95%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1405 AAGCCAAATAATATTATAGTCGTTGAACACTTGTGTTTTCAAGTGTATAGGCTTTGATAT 1464 ||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1268 AAGCCCAATAATATGATAGTCGTTGAACACTTATGTTTTCAAGTGTGTAGGCTTTGATAT 1327 Query 1465 ACCATCAGGATGATGAACATG 1485 ||||||||||||||||||||| Sbjct 1328 ACCATCAGGATGATGAACATG 1348 > Ahg314476 jgi|Araly1|314476|fgenesh1_pm.C_scaffold_1003256 Length=1128 Score = 1114 bits (603), Expect = 0.0 Identities = 960/1128 (85%), Gaps = 41/1128 (4%) Strand=Plus/Plus Query 152 ATGAAACGAGG--ATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCAGAT 209 ||||||||||| ||| | ||| ||||| ||||| |||| || |||| |||| || |||| Sbjct 1 ATGAAACGAGGAAATT-T-CGAATCTCCCTCAAGTTCTGATCTTCCTTCTTCATCAAGAT 58 Query 210 TCAAATCT-AATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGA-GACTA-CA--AAGAA 264 ||||| || |||||||||||||||||| ||||| | ||||||| || || || ||||| Sbjct 59 TCAAA-CTAAATCCCGAAGGTGATTCTGAGTTTTTAAAAGATGATGA-TAGCACCAAGAA 116 Query 265 TTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCG 324 |||||| || || || ||||||||||||||||| |||||||| ||||| || ||||| | Sbjct 117 TTTTGCTCGTAAGGTCGCTGATCATTACAGTAGAAGAACAAATCAAACTTTAGAAGAAAG 176 Query 325 AGAAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGAT 384 |||| | ||||| ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct 177 AGAATCAAGTCCTATCATTCATTTAAAAAAACTTAATAATTGGATTAAAAGTGTGTTGAT 236 Query 385 CCAGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGA 444 ||||||||| |||||| ||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct 237 TCAGCTTTATACTCGTCGTGATGATGCAGTTCTAGACCTTGCTTGTGGGAAGGGTGGTGA 296 Query 445 TTTGATCAAGTGGGATAAGGCGA-GAATCGGGTACTATGTTGGAATTGATATTGCTGAAG 503 |||||| |||||||| ||||||| | ||||| ||||||||||| || ||||||||||||| Sbjct 297 TTTGATTAAGTGGGAGAAGGCGATG-ATCGGTTACTATGTTGGTATCGATATTGCTGAAG 355 Query 504 GGTCGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTA 563 | ||||||||||||||||| || |||||||| |||||||| ||||||||||| || | || Sbjct 356 GATCGATTGAAGATTGTCGGACACGTTATAATGGTGATGCGGACCATCATCATCGCCATA 415 Query 564 AAAAGT-TCAGTTTTCC-GTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGA 621 ||||| | ||||| || | | || ||||| ||||| |||||||||||| | ||||| || Sbjct 416 GAAAGTAT-AGTTTCCCAG-CCCGTTTATTGTGTGGAGATTGTTTTGAGATTGAGCTTGA 473 Query 622 CAAGATTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTA 681 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 474 CAAGATTCTTGAAGAGGATGCTCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTA 533 Query 682 CTCATGGACTACTGAGGCACGTGC-ACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTC 740 ||| ||||| |||||| | ||||| | ||||||| ||| ||||||||||||| ||||||| Sbjct 534 CTCTTGGACAACTGAGACCCGTGCTA-GACGAGCCTTGTCAAATGTTTCAGCATTACTTC 592 Query 741 GTCCAGGAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATaaaaaaaCT-C 799 |||| ||||| ||||||| |||||||||||||| ||||||||||| |||||||| || | Sbjct 593 GTCCTGGAGGCATCTTTATTGGAACAATGCCAGACGCCAATGTTATCATAAAAAAGCTTC 652 Query 800 AGAGAAGCTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAG 859 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 653 -GAGAAGCTGAAGGTCTGGAGATTGGTAATAGTGTATACTGGATTCGTTTTGGTGAAGAG 711 Query 860 TATTCCCAAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAA-TACGTGTTTCATCT 918 ||||| ||||||||||| ||| |||||||||| ||||||||| || || || |||||||| Sbjct 712 TATTCTCAAAAGAAGTTTAAAGCTAGCAGCCCCTTTGGTATC-AAGTATGTATTTCATCT 770 Query 919 CGAGGATGCTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGC 978 |||||||| |||||||||||||||||||||||||| ||| |||||||||| || ||||| Sbjct 771 TGAGGATGCCGTTGATTGTCCTGAATGGATTGTGCCATTTCACGTCTTCAAATCCTTAGC 830 Query 979 GGAGGAGTATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTA 1038 || ||||||||||||||| ||||||| |||||||||| || |||||||| || ||||| Sbjct 831 AGAAGAGTATGATTTAGAGCTGGTATTAGTGAAGAACTTTCATGAGTTTGTGCACGAGTA 890 Query 1039 TATG-AAAAAGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTA 1097 ||| ||||| || |||||| | || |||||| ||| |||||||||||| |||||||||| Sbjct 891 CATGCAAAAA-CCTGAGTTTTTGGAGCTCATGCGAAAGCTTGGTGCTTTAGGTGATGGTA 949 Query 1098 G-C-AATGATCAGA-GCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCT 1154 | || | || | ||||| ||||||| |||||||||||||| || ||| | ||||||| Sbjct 950 ATCGAA--A-CAAAAGCACACTATCAGCGGATGAATGGGAAGCCGCGTATCTCTACCTCT 1006 Query 1155 CTTTTGTCTTGAGAAAGAGGGGAGAATCAGAT-GGAGCTCGAAGGAG--CGGGC-GGA-G 1209 ||||||| || |||||||| ||| |||| ||| || ||| ||| || | | | ||| | Sbjct 1007 CTTTTGTGTTTAGAAAGAGAGGACAATCTGATAGG-GCTGGAACAAGAACTG-CAGGAAG 1064 Query 1210 GAAGAA---TGGGAAAATGAACTTGTCGAAAGATGATGTTTTGTATAT 1254 ||| || ||||||||||||| | ||||| || ||| |||||||||| Sbjct 1065 GAATAACAATGGGAAAATGAACATATCGAAGGACGATATTTTGTATAT 1112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61211023715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5