BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20650.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479592 jgi|Araly1|479592|fgenesh2_kg.3__2293__AT3G20650.2 2001 0.0
Ahg314476 jgi|Araly1|314476|fgenesh1_pm.C_scaffold_1003256 1114 0.0
> Ahg479592 jgi|Araly1|479592|fgenesh2_kg.3__2293__AT3G20650.2
Length=1400
Score = 2001 bits (1083), Expect = 0.0
Identities = 1187/1236 (96%), Gaps = 11/1236 (1%)
Strand=Plus/Plus
Query 147 TTGTTATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCA 206
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 34 TTGTAATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGGTCCTCCTCCTTCTTCCA 93
Query 207 GATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATT 266
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 94 GATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAAACCACAAAGAATT 153
Query 267 TTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAG 326
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 154 TTGCCCGGAAAGTTGCTGATCATTACAGTCGGAGAACTAACCAAACATTGGAAGAGCGAG 213
Query 327 AAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGATCC 386
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 214 AAGCTAGTCCCATCATCCATTTGAAGAAGCTTAACAATTGGATTAAAAGTGTGTTGATCC 273
Query 387 AGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 AGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATT 333
Query 447 TGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGT 506
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 334 TGATCAAATGGGATAAGGCGAGAATCGGGTACTATGTTGGAATCGATATTGCTGAAGGGT 393
Query 507 CGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAA 566
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 394 CGATTGAAGATTGTCGTACGCGTTATAATGGTGATGCAGACCATCATCAACGGCGTAAAA 453
Query 567 AGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGA 626
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AGTTCAGTTTTCCGTCCCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGA 513
Query 627 TTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCAT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCAT 573
Query 687 GGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGTCCAG 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 574 GGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGCCCAG 633
Query 747 GAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATaaaaaaaCTCAGAGAAG 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATAAAAAAACTCAGAGAAG 693
Query 807 CTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCC 866
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 694 CTGAAGGTTTGGAGATTGGTAATAGTGTATACTGGATTCGTTTTGGTGAAGAGTATTCCC 753
Query 867 AAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTGTTTCATCTCGAGGATG 926
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 754 AAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTATTTCATCTGGAGGATG 813
Query 927 CTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCGGAGGAGT 986
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 814 CTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCAGAAGAGT 873
Query 987 ATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAA 933
Query 1047 AGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAGCAATGATC 1106
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 934 AGCCAGAGTTTGTGGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAACAATGATC 993
Query 1107 AGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCTCTTTTGTCTTGA 1166
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 994 AGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATCTATACCTCTCTTTTGTCTTGA 1053
Query 1167 GAAAGAGGGGAGAATCAGATGGAGCTCGAAGGAGCGGGCGGAGGAAGAATGGGAAAATGA 1226
| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1054 GGAAGAGGGGAGAACCAGATGGAGCTCGAAGGAGCGGACGGAGGAAGAATGGGAAAATGA 1113
Query 1227 ACTTGTCGAAAGATGATGTTTTGTATATCGATAGCTGAAGTGTCAAAGAGTGTTTCTTTT 1286
|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1114 ACTTATCGAAAGACGATGTTTTGTATATCGATAGCTGAAGTGTAAAAGAATGTTCCTTTT 1173
Query 1287 A--CTCTT-AG------A-GTCTCTGTTTTTGGTCTCACTTCGTTGTCTTACGTTTTTGG 1336
| | | || | ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1174 ATACACCAGAGTGTCTCAAGTCTCTGTTTT-GGTCTCACTTCGTTCTCTTACGTTTTTGG 1232
Query 1337 CCATTTGAATTGAGAGATTGCATTACTTTAGAAAAA 1372
|||||||||||||||||||| ||||||| ||||||
Sbjct 1233 CCATTTGAATTGAGAGATTGTTTTACTTTCGAAAAA 1268
Score = 128 bits (69), Expect = 1e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1405 AAGCCAAATAATATTATAGTCGTTGAACACTTGTGTTTTCAAGTGTATAGGCTTTGATAT 1464
||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1268 AAGCCCAATAATATGATAGTCGTTGAACACTTATGTTTTCAAGTGTGTAGGCTTTGATAT 1327
Query 1465 ACCATCAGGATGATGAACATG 1485
|||||||||||||||||||||
Sbjct 1328 ACCATCAGGATGATGAACATG 1348
> Ahg314476 jgi|Araly1|314476|fgenesh1_pm.C_scaffold_1003256
Length=1128
Score = 1114 bits (603), Expect = 0.0
Identities = 960/1128 (85%), Gaps = 41/1128 (4%)
Strand=Plus/Plus
Query 152 ATGAAACGAGG--ATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCAGAT 209
||||||||||| ||| | ||| ||||| ||||| |||| || |||| |||| || ||||
Sbjct 1 ATGAAACGAGGAAATT-T-CGAATCTCCCTCAAGTTCTGATCTTCCTTCTTCATCAAGAT 58
Query 210 TCAAATCT-AATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGA-GACTA-CA--AAGAA 264
||||| || |||||||||||||||||| ||||| | ||||||| || || || |||||
Sbjct 59 TCAAA-CTAAATCCCGAAGGTGATTCTGAGTTTTTAAAAGATGATGA-TAGCACCAAGAA 116
Query 265 TTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCG 324
|||||| || || || ||||||||||||||||| |||||||| ||||| || ||||| |
Sbjct 117 TTTTGCTCGTAAGGTCGCTGATCATTACAGTAGAAGAACAAATCAAACTTTAGAAGAAAG 176
Query 325 AGAAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGAT 384
|||| | ||||| ||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 177 AGAATCAAGTCCTATCATTCATTTAAAAAAACTTAATAATTGGATTAAAAGTGTGTTGAT 236
Query 385 CCAGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGA 444
||||||||| |||||| ||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 237 TCAGCTTTATACTCGTCGTGATGATGCAGTTCTAGACCTTGCTTGTGGGAAGGGTGGTGA 296
Query 445 TTTGATCAAGTGGGATAAGGCGA-GAATCGGGTACTATGTTGGAATTGATATTGCTGAAG 503
|||||| |||||||| ||||||| | ||||| ||||||||||| || |||||||||||||
Sbjct 297 TTTGATTAAGTGGGAGAAGGCGATG-ATCGGTTACTATGTTGGTATCGATATTGCTGAAG 355
Query 504 GGTCGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTA 563
| ||||||||||||||||| || |||||||| |||||||| ||||||||||| || | ||
Sbjct 356 GATCGATTGAAGATTGTCGGACACGTTATAATGGTGATGCGGACCATCATCATCGCCATA 415
Query 564 AAAAGT-TCAGTTTTCC-GTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGA 621
||||| | ||||| || | | || ||||| ||||| |||||||||||| | ||||| ||
Sbjct 416 GAAAGTAT-AGTTTCCCAG-CCCGTTTATTGTGTGGAGATTGTTTTGAGATTGAGCTTGA 473
Query 622 CAAGATTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTA 681
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAAGATTCTTGAAGAGGATGCTCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTA 533
Query 682 CTCATGGACTACTGAGGCACGTGC-ACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTC 740
||| ||||| |||||| | ||||| | ||||||| ||| ||||||||||||| |||||||
Sbjct 534 CTCTTGGACAACTGAGACCCGTGCTA-GACGAGCCTTGTCAAATGTTTCAGCATTACTTC 592
Query 741 GTCCAGGAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATaaaaaaaCT-C 799
|||| ||||| ||||||| |||||||||||||| ||||||||||| |||||||| || |
Sbjct 593 GTCCTGGAGGCATCTTTATTGGAACAATGCCAGACGCCAATGTTATCATAAAAAAGCTTC 652
Query 800 AGAGAAGCTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAG 859
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 653 -GAGAAGCTGAAGGTCTGGAGATTGGTAATAGTGTATACTGGATTCGTTTTGGTGAAGAG 711
Query 860 TATTCCCAAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAA-TACGTGTTTCATCT 918
||||| ||||||||||| ||| |||||||||| ||||||||| || || || ||||||||
Sbjct 712 TATTCTCAAAAGAAGTTTAAAGCTAGCAGCCCCTTTGGTATC-AAGTATGTATTTCATCT 770
Query 919 CGAGGATGCTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGC 978
|||||||| |||||||||||||||||||||||||| ||| |||||||||| || |||||
Sbjct 771 TGAGGATGCCGTTGATTGTCCTGAATGGATTGTGCCATTTCACGTCTTCAAATCCTTAGC 830
Query 979 GGAGGAGTATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTA 1038
|| ||||||||||||||| ||||||| |||||||||| || |||||||| || |||||
Sbjct 831 AGAAGAGTATGATTTAGAGCTGGTATTAGTGAAGAACTTTCATGAGTTTGTGCACGAGTA 890
Query 1039 TATG-AAAAAGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTA 1097
||| ||||| || |||||| | || |||||| ||| |||||||||||| ||||||||||
Sbjct 891 CATGCAAAAA-CCTGAGTTTTTGGAGCTCATGCGAAAGCTTGGTGCTTTAGGTGATGGTA 949
Query 1098 G-C-AATGATCAGA-GCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCT 1154
| || | || | ||||| ||||||| |||||||||||||| || ||| | |||||||
Sbjct 950 ATCGAA--A-CAAAAGCACACTATCAGCGGATGAATGGGAAGCCGCGTATCTCTACCTCT 1006
Query 1155 CTTTTGTCTTGAGAAAGAGGGGAGAATCAGAT-GGAGCTCGAAGGAG--CGGGC-GGA-G 1209
||||||| || |||||||| ||| |||| ||| || ||| ||| || | | | ||| |
Sbjct 1007 CTTTTGTGTTTAGAAAGAGAGGACAATCTGATAGG-GCTGGAACAAGAACTG-CAGGAAG 1064
Query 1210 GAAGAA---TGGGAAAATGAACTTGTCGAAAGATGATGTTTTGTATAT 1254
||| || ||||||||||||| | ||||| || ||| ||||||||||
Sbjct 1065 GAATAACAATGGGAAAATGAACATATCGAAGGACGATATTTTGTATAT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5