BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20660.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930011 jgi|Araly1|930011|scaffold_302468.1 2516 0.0
> Ahg930011 jgi|Araly1|930011|scaffold_302468.1
Length=1623
Score = 2516 bits (1362), Expect = 0.0
Identities = 1541/1628 (95%), Gaps = 9/1628 (1%)
Strand=Plus/Plus
Query 64 tgtaaaaatcaaaaca-taaaTTATGGAATCTCCGGAGGATAGAAACGGTAACGATGTCC 122
||||||||| |||| | |||| |||||||||||| || || |||||||||||||| ||||
Sbjct 1 TGTAAAAATTAAAAAATTAAA-TATGGAATCTCCAGATGAAAGAAACGGTAACGACGTCC 59
Query 123 GACAACCGCTGCTAGAGAAAATTCCGGTGAAGAAAGAAGCGGAGGGAGAGGAGAGATTAT 182
|||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 60 GACAACCGTTGCTGGAGAAAATTCCGGCGAAGAAAGAAGCGGAGGGAGAAGAGAGATTGT 119
Query 183 GCATAGATGAGATGTTACAAAGATATTGCGGCGAGTTTGGGAGGTGGCAGTTGAAACACT 242
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 120 GCATAGATGAGATGTTACAAAGATACTGCGGCGAGTTTGGTAGGTGGCAGCTGAAACACT 179
Query 243 TCGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTGATGATATTTG 302
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TTGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTTATGATATTTG 239
Query 303 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTCGGATTGTCGGGTCGGGTCAT-TGAAC 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 240 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTTGGATTGTCGGGTCGGGTCATCT-AAC 298
Query 362 TGCGAGT-TGGATCCGAGTTCTTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 420
||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGCGA-TATGGATCCGAGTTCCTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 357
Query 421 GGAGTGGGGATTGATTTGCGGCGACAAGTATAAAGTTGGTCTTGTTCAGGCTCTCTTCTT 480
||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 358 GGAGTGGGGATTGATTTGCGGTGAGAAGTATAAAGTTGGTCTTGTTCAAGCTCTTTTCTT 417
Query 481 CGCCGGCTGCATGATCGGTGCAGGAGTATTCGGACATTTATCGGACTCTAAGCTAGGAAG 540
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 418 CGCCGGATGCATGATCGGTGCAGGAGTATTCGGACATCTATCGGACTCCAAGCTAGGAAG 477
Query 541 AAAAGGCTCGCTAACAGTTGTATGCATTATCAACGCAATCTTTGGTATCGCGACAGCTTT 600
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 478 AAAAGGCTCGCTAACAGTTGTTTGCATTATCAACGCAATCTTTGGTATCGCAACAGCTTT 537
Query 601 CTCCCCAAACTACTGGACCTATGTAGTTCTCCGTTTCTTGACTGGTTTCAGCACCGGTGG 660
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 538 CTCCCCAAACTATTGGACCTATGTGGTTCTCCGGTTCTTGACTGGTTTCAGCACCGGTGG 597
Query 661 TGTTGGCCTAACCGCGTTTGTCTTAGCCACTGAACCCATTGGACCGAGCAAACGCGGTGT 720
|||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| |||||
Sbjct 598 TGTTGGCCTAACTGCGTTTGTCCTAGCCACTGAACCCATAGGACCAAGCAAACGTGGTGT 657
Query 721 AGCCGGAATGTCAACTTTCTACTTCTTCTCCGCGGGCATTGCAGTTTTATCCGGCATCGC 780
|||||||||||||||||||||||||||||| || ||||||||| || | |||||||| ||
Sbjct 658 AGCCGGAATGTCAACTTTCTACTTCTTCTCTGCCGGCATTGCACTTCTCTCCGGCATTGC 717
Query 781 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCATCTCTCTTGTT 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCGTCTCTCTTGTT 777
Query 841 CCTACTCATTGTTATCCCATTCATATCCGAGTCCCCAAGGTGGTATCTCGTGAGAGGCAA 900
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 778 CCTACTCATTGTTATCCCATTCATCTCCGAGTCCCCTAGGTGGTATCTCGTGAGAGGCAA 837
Query 901 AGTAGATGAGGCGATGAAGCTGATGCATTCGATCGCTAAAACGAACGGACGTCACATTCC 960
|||||| |||||||||||| ||||||||| |||||||||||||||||| || ||||||||
Sbjct 838 AGTAGACGAGGCGATGAAGTTGATGCATTTGATCGCTAAAACGAACGGGCGCCACATTCC 897
Query 961 AGCTGGTGTCACTCTTGCT-TTAGACGACGATGTGGAAAATAACAACGGGGAGAGGAATA 1019
||||| |||||||||||| || |||||||| ||||||||||| ||||| ||||||||||
Sbjct 898 CGCTGGAGTCACTCTTGCTCTT-GACGACGACGTGGAAAATAAAAACGGAGAGAGGAATA 956
Query 1020 CCGCTGTTGAGGGTTCGCTGAAAGATGTTATACTGTCGCCTCTCATGCGGATGAGACTTG 1079
| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 957 CTGCTGTTGAGGGTTCGCTCAAGGATGTTATACTGTCGCCTCTCATGCGGATCAGACTTC 1016
Query 1080 TCATTTCGGTTGCCATAAGTTTCACAGTCTCTATTGTATACTACGGACTAAGCCTCAACG 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 TCATTTCGGTTGCCATAAGTTTCACAGTCTCGATTGTATACTACGGACTAAGCCTCAACG 1076
Query 1140 TAGGCAACCTCAAGACCAATCTTTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1199
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 TAGTCAACCTCAAGACCAATCTCTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1136
Query 1200 CGGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1259
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1196
Query 1260 GGACACAGTGGTTCAGCTGCGTTTTCTGCCTCGTTGGATTCTCTGTATGGGGAGCTGGTC 1319
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 1197 GGACACAGTGGTTCAGCTGCGTTTTCTGTCTCGTAGGATTCGCTGTATGGGGAGCTGGTC 1256
Query 1320 CATGGAAATCAGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1379
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CATGGAAATCGGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1316
Query 1380 ACAATCTTCTGTTCATATACATCGCGGAGCTGTTTCCAACAGTGGTGAGGAACGCGGCAT 1439
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1317 ACAATCTTCTGTTCATATACATCGCAGAGCTGTTTCCAACAGTGGTGAGGAACGCAGCAT 1376
Query 1440 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCGATTCTGGCGCCGTTTGTGGTGGTTT 1499
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1377 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCAATTCTGGCGCCTTTTGTGGTGGTTT 1436
Query 1500 TAGGGGAAGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1559
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TAGGGGAGGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1496
Query 1560 CGTTTTACTTGCCAGAGACGTTAAACAAGCCGTTGTATGATACAATGTTTGGGATGCACG 1619
||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1497 CGTTTTACTTGCCGGAGACGTTAAACAAGCCGTTGTATGACACAATGTCTGGAATGCACG 1556
Query 1620 AAGCTGAGAGTGAGAGTAACAGAGAAAGAGGAGAAGTAATATGTTAAAAGAAACAGAATT 1679
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1557 AAGCTGAGAGTGAGAGTAACAGAGGAAGAGGAGAAGTAATATGTTAAA-GAAACAGAATT 1615
Query 1680 TACACTTA 1687
||| ||||
Sbjct 1616 TACTCTTA 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5