BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20670.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930013 jgi|Araly1|930013|scaffold_302470.1 691 0.0
Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 451 3e-126
Ahg950114 jgi|Araly1|950114|scaffold_802001.1 302 3e-81
> Ahg930013 jgi|Araly1|930013|scaffold_302470.1
Length=441
Score = 691 bits (374), Expect = 0.0
Identities = 419/441 (95%), Gaps = 2/441 (0%)
Strand=Plus/Plus
Query 46 TCTCTCTTCCCAAATCACAAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTA 105
|||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 2 TCTCTCTTCCAAAATCACAAATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGTTGCTA 61
Query 106 AGAAATCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTC 165
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 AGAAGTCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTC 121
Query 166 GTTTTCTAAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAG 225
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 GTTTTCTGAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTCTACTTAG 181
Query 226 CCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGG 285
|||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct 182 CCGCTGTTCTCGAATACCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGG 241
Query 286 ATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGG 345
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 242 ATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGG 301
Query 346 AGCTGAGTAAACTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTC 405
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGCTGAGTAAGTTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTC 361
Query 406 ACAGTCTTCTTCTTCCCAAGAAAGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGA 465
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 362 ACAGTCTTCTTCTTCCCAAGAAGGCTGGTGCTTCCAAACCTTCCGCTGATGAAGACTAGA 421
Query 466 TTAGGGATTTG-TGTTGTGGT 485
||||| |||| |||||||||
Sbjct 422 TTAGGT-TTTGGTGTTGTGGT 441
> Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1
Length=581
Score = 451 bits (244), Expect = 3e-126
Identities = 356/409 (87%), Gaps = 11/409 (3%)
Strand=Plus/Plus
Query 65 AATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGT-TGCTAAGAAATCAACATCGAGAA 123
|||||||||||| |||||||||||||||||||| | ||| ||||| ||||| | ||||
Sbjct 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGG-ATCTGCGAAGAAGGCAACAACAAGAA 120
Query 124 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTC-TAAAGAACGGC 182
|||||||||||||||| |||||||| || |||||||||||||| |||| | ||||| |||
Sbjct 121 GCAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTGAAGAAAGGC 179
Query 183 AAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 241
|| |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAATACGCCGA-ACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 238
Query 242 CCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGACTAG 301
||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 239 CCTCGCCGCCGAGGTTTTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACAAG 298
Query 302 GATTGTGCC-ACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAACTGC 360
|||||| || | | || ||||| | |||||||| |||||||| || |||| ||| |||
Sbjct 299 GATTGTTCCGAGG-CATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGC 357
Query 361 TTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTC 420
|||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 358 TTGGTGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTCTTC 417
Query 421 CCAAGAA-AGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGATTA 468
| ||||| | |||||||||| || || || ||||| || |||| |||||
Sbjct 418 CTAAGAAGA-CTGGTGCTTCCAAGCCATCTGCTGAAGACGATT-GATTA 464
> Ahg950114 jgi|Araly1|950114|scaffold_802001.1
Length=434
Score = 302 bits (163), Expect = 3e-81
Identities = 315/387 (81%), Gaps = 16/387 (4%)
Strand=Plus/Plus
Query 64 AAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTAAGAAATCAACATCGAGAA 123
||||||| ||||| || |||||||| ||||| || | || |||||| | ||||| | |
Sbjct 20 AAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGCGGCGAAGAAAGCCACATCTCGGA 79
Query 124 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTC-T-AAAGAACGG 181
| |||||||| ||||| ||||| || || |||||||||||||| ||| | |||| |||
Sbjct 80 GTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCG-ATTCTTGAAAG-CCGG 137
Query 182 CAAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTTTACT-TAGCCGCCGTTCTCGAA 239
|| |||| | | |||||||||||| || |||||||| || | | ||||||||||| ||
Sbjct 138 TAAATACGCCGA-ACGTGTTGGTGCTGGTGCTCCGGTCTA-TCTCGCCGCCGTTCTTGAG 195
Query 240 TACCTCGCCGCTGAGG-TATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGAC 298
|| | ||||| |||| | || ||||| ||||| |||||||| || || |||||||||||
Sbjct 196 TATTTGGCCGCCGAGGTTCTT-GAATTAGCTGGGAACGCAGCAAGAGACAACAAGAAGAC 254
Query 299 TA-GGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAAC 357
| | ||||| || ||||| ||||||||||| || ||||||||||||||||| || || |
Sbjct 255 -ACGTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGC 313
Query 358 TGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTC 417
| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 314 TTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTC 373
Query 418 TTCCC-AAGAAAG-CTGGTGCTTCAAA 442
| ||| ||||| | ||||| |||||||
Sbjct 374 T-CCCTAAGAA-GTCTGGTCCTTCAAA 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23712454374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5