BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20670.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value Ahg930013 jgi|Araly1|930013|scaffold_302470.1 691 0.0 Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 451 3e-126 Ahg950114 jgi|Araly1|950114|scaffold_802001.1 302 3e-81 > Ahg930013 jgi|Araly1|930013|scaffold_302470.1 Length=441 Score = 691 bits (374), Expect = 0.0 Identities = 419/441 (95%), Gaps = 2/441 (0%) Strand=Plus/Plus Query 46 TCTCTCTTCCCAAATCACAAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTA 105 |||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| Sbjct 2 TCTCTCTTCCAAAATCACAAATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGTTGCTA 61 Query 106 AGAAATCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTC 165 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 62 AGAAGTCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTC 121 Query 166 GTTTTCTAAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAG 225 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 122 GTTTTCTGAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTCTACTTAG 181 Query 226 CCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGG 285 |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| Sbjct 182 CCGCTGTTCTCGAATACCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGG 241 Query 286 ATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGG 345 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 242 ATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGG 301 Query 346 AGCTGAGTAAACTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTC 405 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 AGCTGAGTAAGTTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTC 361 Query 406 ACAGTCTTCTTCTTCCCAAGAAAGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGA 465 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 362 ACAGTCTTCTTCTTCCCAAGAAGGCTGGTGCTTCCAAACCTTCCGCTGATGAAGACTAGA 421 Query 466 TTAGGGATTTG-TGTTGTGGT 485 ||||| |||| ||||||||| Sbjct 422 TTAGGT-TTTGGTGTTGTGGT 441 > Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 Length=581 Score = 451 bits (244), Expect = 3e-126 Identities = 356/409 (87%), Gaps = 11/409 (3%) Strand=Plus/Plus Query 65 AATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGT-TGCTAAGAAATCAACATCGAGAA 123 |||||||||||| |||||||||||||||||||| | ||| ||||| ||||| | |||| Sbjct 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGG-ATCTGCGAAGAAGGCAACAACAAGAA 120 Query 124 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTC-TAAAGAACGGC 182 |||||||||||||||| |||||||| || |||||||||||||| |||| | ||||| ||| Sbjct 121 GCAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTGAAGAAAGGC 179 Query 183 AAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 241 || |||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AAATACGCCGA-ACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 238 Query 242 CCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGACTAG 301 ||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| || Sbjct 239 CCTCGCCGCCGAGGTTTTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACAAG 298 Query 302 GATTGTGCC-ACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAACTGC 360 |||||| || | | || ||||| | |||||||| |||||||| || |||| ||| ||| Sbjct 299 GATTGTTCCGAGG-CATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGC 357 Query 361 TTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTC 420 |||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 358 TTGGTGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTCTTC 417 Query 421 CCAAGAA-AGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGATTA 468 | ||||| | |||||||||| || || || ||||| || |||| ||||| Sbjct 418 CTAAGAAGA-CTGGTGCTTCCAAGCCATCTGCTGAAGACGATT-GATTA 464 > Ahg950114 jgi|Araly1|950114|scaffold_802001.1 Length=434 Score = 302 bits (163), Expect = 3e-81 Identities = 315/387 (81%), Gaps = 16/387 (4%) Strand=Plus/Plus Query 64 AAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTAAGAAATCAACATCGAGAA 123 ||||||| ||||| || |||||||| ||||| || | || |||||| | ||||| | | Sbjct 20 AAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGCGGCGAAGAAAGCCACATCTCGGA 79 Query 124 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTC-T-AAAGAACGG 181 | |||||||| ||||| ||||| || || |||||||||||||| ||| | |||| ||| Sbjct 80 GTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCG-ATTCTTGAAAG-CCGG 137 Query 182 CAAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTTTACT-TAGCCGCCGTTCTCGAA 239 || |||| | | |||||||||||| || |||||||| || | | ||||||||||| || Sbjct 138 TAAATACGCCGA-ACGTGTTGGTGCTGGTGCTCCGGTCTA-TCTCGCCGCCGTTCTTGAG 195 Query 240 TACCTCGCCGCTGAGG-TATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGAC 298 || | ||||| |||| | || ||||| ||||| |||||||| || || ||||||||||| Sbjct 196 TATTTGGCCGCCGAGGTTCTT-GAATTAGCTGGGAACGCAGCAAGAGACAACAAGAAGAC 254 Query 299 TA-GGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAAC 357 | | ||||| || ||||| ||||||||||| || ||||||||||||||||| || || | Sbjct 255 -ACGTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGC 313 Query 358 TGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTC 417 | ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||| Sbjct 314 TTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTC 373 Query 418 TTCCC-AAGAAAG-CTGGTGCTTCAAA 442 | ||| ||||| | ||||| ||||||| Sbjct 374 T-CCCTAAGAA-GTCTGGTCCTTCAAA 398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23712454374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5