BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20680.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479594 jgi|Araly1|479594|fgenesh2_kg.3__2295__AT3G20680.1 1506 0.0
> Ahg479594 jgi|Araly1|479594|fgenesh2_kg.3__2295__AT3G20680.1
Length=1059
Score = 1506 bits (815), Expect = 0.0
Identities = 973/1049 (93%), Gaps = 11/1049 (1%)
Strand=Plus/Plus
Query 25 ATCAGCCATGGCTTCTTCGACTCTCTTCAAACTCAATTCACAGACATTCAAAGCTCTAAA 84
||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct 18 ATCAGCCATGGCTTCTTCGACTCTCTTCAAACTTAATTCACAGACTTTGAAAGCACTAAA 77
Query 85 CCCATCTCCTCCTTCGTTATCTCCTCCCAATTCCAGAATTTTCCATCTTCATTTCTCCAA 144
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 78 CCCTTCTCCCCCTTCGTTATCTCCTCCTAATTCCAGAATTTTCCATCTTCATTTCTCCAA 137
Query 145 ATCACTCT--C-ACAACAGCATTCAAAGCTCAACCACAAATCAACCACTACTCGTTTATT 201
|||||||| | |||||| ||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 138 ATCACTCTCACAACAACAACATTCAAAGCTCAGCCACAAATCAACAACTACTCGTTTCTT 197
Query 202 CGctcctctctgttcctctcttccttcaccttcttcttcttctcctcccctttccAAAGA 261
|| ||||||||||| ||||||||||||| | ||||||||||||| ||||||||||
Sbjct 198 CGTTCCTCTCTGTTTCTCTCTTCCTTCA----C--CTTCTTCTCCTCCAATTTCCAAAGA 251
Query 262 AGAAGCCATTAATCAAGCCAAAACTTGTCTCCTTTCATGTCTCATCAAACCCTTAAACAA 321
|||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 252 AGAAGCCATTCTTCAAGCCAAGACTTGTCTCCTTTCTTGTCTCATCAAACCCTTAAACAA 311
Query 322 CCCAAAACTCGCTTCCCCAAAACTCAGGAAGCTCAAACAACCAAGATTCCGTCTTGAAAT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CCCAAAACTCGCTTCCCCAAAACTCAGGAAGCTCAAACAACCAAGATTCCGTCTTGAAAT 371
Query 382 CCCAATCCTTGACGATGATTCTCCTTCGTCACTCTCTCAGCTCGCTTTCTCGATCTTTCA 441
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 372 CCCAATCCTTGACGATGATTCTCCTTCGTCTCTCTCTCAGCTCGCTTTTTCGATCTTCCA 431
Query 442 TGACTTACCCATCTCGAGAAGAGGCTCTAATGTCAAGCTTCTCTTCCTCTGGCCTAACCC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 432 TGACTTACCCATCTCGAGAAGAGGCTCTAATGTCAAGCTTCTCTTCCTCTGGCCTGACCC 491
Query 502 TTCATTCATCGATCCCGCCGTTAAAGCTTTCCGGTCAGACTCTATCCACCACATTGCCAT 561
||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 492 TTCATTCATCGATTCCGCCGTTAAAGCTTTCCGGTCAGACTCTGTTAACCACATTGCCAT 551
Query 562 GTCTCCGGTCTCAGACTCTCTTAA-AACAGCTCTGAGATCTGCTGACGTGGCGATCTTCA 620
|||||| || ||||||||| |||| || ||||||||||||||||||||||||| | ||||
Sbjct 552 GTCTCCTGTTTCAGACTCTGTTAACAA-AGCTCTGAGATCTGCTGACGTGGCGGTTTTCA 610
Query 621 TGGCTCCGGAGAAATCGCAGCTGGAGGATGTTAAGACCGCGAGTGAAGCTTTTTCTACAA 680
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | | |
Sbjct 611 TGGCTCCGGAGAAATCGCAGCTGGAGGATGTGAAGACGGCGAGTGAAGCTTTTTTTTCGA 670
Query 681 AACCTGTAGTAATGATCAATCCGAGATGGTTGTTTGAAGAAGAGAAAAGCTTTGGAGATG 740
||||||| || |||||||||||||||||||||||||| ||||||||| | ||||| ||||
Sbjct 671 AACCTGTGGTGATGATCAATCCGAGATGGTTGTTTGAGGAAGAGAAAGGATTTGGTGATG 730
Query 741 GCTTTATTGGTTCCTTTGAAGTGATTTATGCGTTCACTGGCTTAGAAGTGAGAGGAGTGT 800
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 731 GCTTTATTGGTTCCTTTGAAGTGATTTATGCGTTCACAGGTTTAGAAGTGAGAGGAGTGT 790
Query 801 TTAGTAAGAGAAAAGGAGTGATCTTTAAGTGTGTAAGAGACGGTGTTGTGAGTGGAGAAA 860
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 791 TGAGTAAGAGAAAAGGAGTGATCTTTAAGTGTGTGAGAGATGGTGTTGTGAGTGGAGAGA 850
Query 861 GATGGAATGTTCTCGTTGAAGAAGAAGAAGGTAATGGTACTTTGAAAGTTGTTTCACAAT 920
||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 851 GATGGAATGTTCTTGTTGAAGAAGAAGAAGGTAATGGAACTTTGAAAGTGGTTTCACAGT 910
Query 921 TCAATTCTCGACCATCAATCGAAGAAGTTGAGCTTGTTCTGTATAACTTGATGGCTATGA 980
|||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 911 TCAACTCTCGGCCATCAATGGAAGAAGTTGAGCTTGTTCTGTATAATTTGATGGCTATGA 970
Query 981 ATTCTCCTATTACCAAATCAGCTAAGTTTCTTAGTGATTTGGTTTCAAATATCACTGGGA 1040
|||||||||| |||||||||||||||||||| | ||||||||||| || ||||||||||
Sbjct 971 ATTCTCCTATCACCAAATCAGCTAAGTTTCTGAAAGATTTGGTTTCGAACATCACTGGGA 1030
Query 1041 AGAAGTAGTTTGTTAGGACTTCAATGTGT 1069
||||||| |||||||||| ||||||||||
Sbjct 1031 AGAAGTAATTTGTTAGGAGTTCAATGTGT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5