BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20690.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930018 jgi|Araly1|930018|scaffold_302475.1 499 2e-140
Ahg929853 jgi|Araly1|929853|scaffold_302310.1 106 4e-22
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 69.4 5e-11
Ahg952175 jgi|Araly1|952175|scaffold_43900002.1 56.5 4e-07
Ahg948509 jgi|Araly1|948509|scaffold_800396.1 56.5 4e-07
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 56.5 4e-07
Ahg907520 jgi|Araly1|907520|Al_scaffold_0002_601 56.5 4e-07
Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667 56.5 4e-07
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 52.8 5e-06
> Ahg930018 jgi|Araly1|930018|scaffold_302475.1
Length=1136
Score = 499 bits (270), Expect = 2e-140
Identities = 875/1150 (76%), Gaps = 110/1150 (10%)
Strand=Plus/Plus
Query 1 ATGATGATGTCCGATCTTCCACATGATTTGGTGGAGGAGATTCTCTCTAGGCTTCCGTTG 60
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 22 ATGATGATGTCCAATCTTCCACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTG 81
Query 61 ATATCTTTAAAAGCAATGCGATCTACTTGCAAAACCTGGAACG-TTCTATCCAAACATCG 119
| |||||| ||| || |||||||||||||||||| ||||||| || || ||||| |||
Sbjct 82 ACATCTTTGAAATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTT-TAACCAAATATCA 140
Query 120 GAGCTTTGCAAATAAGCACATCGGCAATGTAACC-GCATCAGGGAAAAGAGA-TTT--GA 175
||| ||| |||||||||||||| |||||||| | | ||||||| ||||||| ||| ||
Sbjct 141 GAGTTTTACAAATAAGCACATCCGCAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCTGA 199
Query 176 TAATGATTAAAGATTGTA-AGGTTTATTCAATTGGCGTCAATCTCCATGGTATTCAGAAC 234
| ||||| | || | || || || ||| |||||||||||||||||||| ||||| ||
Sbjct 200 TCATGATCATGGAGTATAGAGCTT-ATTTGATTGGCGTCAATCTCCATGGAATTCA-AA- 256
Query 235 AACAACAACATTATTGATCTATCTATAAAG-AATAAAGGTATTCTT--CA-CCTAGAAAA 290
| |||||||||| ||||||||||||||| || ||||||| ||| || |||||| |
Sbjct 257 A-CAACAACATT---GATCTATCTATAAAGCAA-AAAGGTAAACTTATCAGCCTAGACTA 311
Query 291 TTTAGATCTAATATTCAAGGAA-AT---ATTCA-ATGTCTTTCACTGCAACGGTTTATTG 345
|| |||| || | | | | | || |||| | |||||||||||| | |||||||||
Sbjct 312 TTCAGATG-AAGAAT-ATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTG 369
Query 346 TTGTTATACGGAAGCATCACTGATGATAGTATTAGGCTTGTGGTTTGTAACCCGTATTGG 405
|| || || || | ||| || | | || | || || ||| ||||||||| ||
Sbjct 370 TTATT---CGTAAACGCCAC-GA-GCT--TAGT-GG-TT-TGG-----AACCCGTATCGG 414
Query 406 GGGAAACGTGAATGGGTCAAACGCATAAATAATTTTGCAAGTTTTGACAAACTT-GCTTT 464
||||||| ||| |||||||| || | | |||| | || | || |||||
Sbjct 415 GGGAAACCAAAATACATCAAACGCGGG--TA-TGT-GCAACTAG-GA-ATG-TTCGCTTT 467
Query 465 CGGATACGACAAATCTTGTGGTTGCCACAAAATCTTAAGGGTTTTCGAT-AGTTACCCTA 523
||||||||||||||| || ||| |||||||||| || ||| |||||| | | ||||| ||
Sbjct 468 CGGATACGACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCA-TTACC-TA 525
Query 524 A-TAGACTT-GAAATCTACAATTTGAGGTCTAATTCACGGATGGTTTCTAGTTTCCCTCT 581
| || || | |||||||| ||||||| ||||||||| |||||||| | ||| | |||
Sbjct 526 AATA-ACATCGAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCT 584
Query 582 TAAATGGGATAT-AGCGTTTATGCAAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGT 640
| |||||| ||| | || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 585 TGAATGGGGTATGAT-GTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGT 643
Query 641 ATGCTAAAGATAGAAGA-TCAGAAGATTGTTATTTAATATGCTTTGATTTTACTAGAGAG 699
|| ||| |||| | || |||| ||||| | ||||| | || ||||||||||| ||||||
Sbjct 644 GTGGTAAGGATA-AGGAATCAGTAGATTATCATTTACTCTGTTTTGATTTTACAAGAGAG 702
Query 700 AGATTCGGACCGCGTCTGCCTCTACCTCAACCCTTCATCGATGAATTTT-TGGGGAGTCT 758
|| || ||||||||||||| ||| || || | || | || ||| |||| |||
Sbjct 703 AGGTTTGGACCGCGTCTGCTTCTGCC-CA----T-CAAAG--GA-TTTGATGGGTC-TCT 752
Query 759 ATATGTGGT-AAGAGAAGAGAAGCTTGCGGTGTTAGTAAAGCGGTGGCGGGGTGGCAAAT 817
|| || || || ||||||| |||| || |||||| | ||||||| | | | ||
Sbjct 753 ATCTGCAGTTAA-AGAAGAGCAGCTAGCAGTGTTAATTAAGCGGTAT-GA--T---ATAT 805
Query 818 CTGAGATCGATATTTGGGTTACGAACAAGATTGAGCCCGATGAAGTCTCGTGGAGCAAGT 877
||| ||| || |||||||||||||||||||||||||| |||| || ||||||| || |
Sbjct 806 CTGCGATAGAGATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCT 865
Query 878 TCTTAAAAGTTGATAACACACCAA-GATTTTTTCTGACTGAGGGATA-CTTGATTTATGA 935
|||||||| |||||| | ||| | | | || || ||| | || ||||||| | ||
Sbjct 866 TCTTAAAATTTGATATGA-ACCTATG-TGATTA-TG-CTGCGA-ATTTCTTGATTGACGA 920
Query 936 TGAAGAGAAA-GTCGTAGTGTTTTTTAATAAAG--AGGAGACA-GAGGG-G-C-TCAAA- 987
|| || ||| |||| |||| ||||| ||| || ||| | || | ||| | | | |||
Sbjct 921 GGA-GATAAAAGTCGCAGTGGTTTTTGATACAGTCAGG-G-CATGGGGGAGTCCT-AAAC 976
Query 988 TC-CACTG--T--C-C--ACATAGCTTACATCGTTGGAGAGAATGGTTATTTCAGAAGAG 1039
|| |||| | | | |||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 977 TCACACTCACTTACACCGACATAGCTTACATCATTGGAGAGAATGGTTGTTTTAGAAGAG 1036
Query 1040 CGGATCTCCGTGAACCTCTATATCAACCACTTTG-CCGTCTTG-TGTGCTCTTATGTACC 1097
|||||||||| || ||| ||| | | ||| | | || |||| | ||||||||||| ||
Sbjct 1037 TGGATCTCCGTAAATCTCGATACCCATCACCTCGTCCA-CTTGCT-TGCTCTTATGTTCC 1094
Query 1098 AAGTTCTGTG 1107
||||||||||
Sbjct 1095 AAGTTCTGTG 1104
> Ahg929853 jgi|Araly1|929853|scaffold_302310.1
Length=935
Score = 106 bits (57), Expect = 4e-22
Identities = 96/114 (84%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 3 GATGATGTCCGATCTTCCACATGATTTGGTGGAGGAGAT-TCTCTCTAGGCTTCCGTTGA 61
|||||||||||||||||||||||||||| | |||||||| | | |||||| |||| ||||
Sbjct 26 GATGATGTCCGATCTTCCACATGATTTGTTAGAGGAGATAT-TATCTAGGGTTCCATTGA 84
Query 62 TAT-CTTTAAAAGCAATGCGATCTACTTGCAAAACCTGGAACG-TTCTATCCAA 113
|| | ||| ||| ||||||||||||||||||| |||||| || |||||||
Sbjct 85 CATGCCTTAGG-GCAGTGCGATCTACTTGCAAAACATGGAACAATT-TATCCAA 136
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 69.4 bits (37), Expect = 5e-11
Identities = 78/97 (80%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 608 ATGGCGTGTCTTTGAAGGGAAATACTTACTGGTATGCTAAAGATAGAAGATCAGAAGATT 667
|||| |||||||||||||||||||||||||||| |||| |||| || || || ||| ||
Sbjct 303 ATGGTGTGTCTTTGAAGGGAAATACTTACTGGTTTGCTTTAGAT-GATGA-CACAAG-TT 359
Query 668 GTTATTTAATATGCTTTGATTTTACTAGAGAGAGATT 704
| || | | | ||||||||||| | |||||||||
Sbjct 360 -TC-TT-ACTCGGTTTTGATTTTACAACAGAGAGATT 393
> Ahg952175 jgi|Araly1|952175|scaffold_43900002.1
Length=1157
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 613 GTGTCTTTGAAGGGAAATACTTACTGGTATGCT 645
|||||||||||||||||||||||||||| ||||
Sbjct 564 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCT 596
> Ahg948509 jgi|Araly1|948509|scaffold_800396.1
Length=197
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 613 GTGTCTTTGAAGGGAAATACTTACTGGTATGCT 645
|||||||||||||||||||||||||||| ||||
Sbjct 114 GTGTCTTTGAAGGGAAATACTTACTGGTGTGCT 146
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 56.5 bits (30), Expect = 4e-07
Identities = 83/106 (78%), Gaps = 13/106 (12%)
Strand=Plus/Plus
Query 605 AAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTAT-GC-TAAAGATAGAAGATCAGA 662
||| ||||||||||||||||||||||||||||| || | || || ||| | || |||
Sbjct 635 AAG-TGGCGTGTCTTTGAAGGGAAATACTTACTTGT-TCGCGTAT-GAT-GTTGA--AGA 688
Query 663 AGATTGTT-ATTTA-A-T-ATGCTTTGATTTTACTAGAGAGAGATT 704
| ||| | |||| | | ||| ||||||||||| | |||||||||
Sbjct 689 AAATTCTAGATTTTTACTTATG-TTTGATTTTACAACAGAGAGATT 733
> Ahg907520 jgi|Araly1|907520|Al_scaffold_0002_601
Length=957
Score = 56.5 bits (30), Expect = 4e-07
Identities = 38/42 (90%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 610 GGCGTGTCTTTGAAGGGAAATACTTACTGGTATGCTAAAGAT 651
|||||||||||||||||||||||||||| | |||| |||||
Sbjct 346 GGCGTGTCTTTGAAGGGAAATACTTACTTTTTTGCTCAAGAT 387
> Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667
Length=2421
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 611 GCGTGTCTTTGAAGGGAAATACTTACTGGT 640
||||||||||||||||||||||||||||||
Sbjct 1880 GCGTGTCTTTGAAGGGAAATACTTACTGGT 1909
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 610 GGCGTGTCTTTGAAGGGAAATACTTACT 637
||||||||||||||||||||||||||||
Sbjct 632 GGCGTGTCTTTGAAGGGAAATACTTACT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5