BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20700.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479595 jgi|Araly1|479595|fgenesh2_kg.3__2296__AT3G20700.1 1074 0.0
Ahg930018 jgi|Araly1|930018|scaffold_302475.1 453 1e-126
Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216 440 8e-123
Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 281 5e-75
> Ahg479595 jgi|Araly1|479595|fgenesh2_kg.3__2296__AT3G20700.1
Length=844
Score = 1074 bits (581), Expect = 0.0
Identities = 703/763 (92%), Gaps = 4/763 (1%)
Strand=Plus/Plus
Query 1 ATGCGATCTACTTGCAAAAAGTGGTACGTTTTAACCAAAGATCAGAGGTTTGCaaaaaaa 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGATCTACTTGCAAAAAGTGGAACGTTTTAACCAAAGATCAGAGGTTTGCAAAAAAG 60
Query 61 CGGGGAAAAGAGTTTCTAATGATAATGAATCGTAGGGTATATTTGATTGGCGTCAATCTC 120
|| |||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 61 CGAGGAAAAGAGTTTCTGATGATAATGAATCATAGGGTGTATCTGATTGGCGTCAATCTC 120
Query 121 CACAACAACATTGATCTATCTATAAAGTGTAGAGGTAGACTTATTAGCAGAGACGAAACA 180
||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||
Sbjct 121 CACGACAACATTGATCTATCTATTAAGTGTAAAGGTAAACTTATTAGCAGAGACAAAACA 180
Query 181 GCTCAGGGATTCTATGTGTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCGTATCA 240
| | ||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 181 GGTGAGGAATTATATGTGTCTCGAGTCTTTCACTGCAATGGTTTATTGTTATGCGTATCA 240
Query 241 GGAAAAACTATTGATGACACTAGGCTTGTGGTTTGTAACCCGTA--TGGGGTAAAACCAA 298
|||||||||| | |||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 241 GGAAAAACTAGTCATGATACTAGGCTTGTGGTTTGTAATCCGTATTTGGGG--AAACCAA 298
Query 299 AATGGATCAATCCCAAAGATAATTACGGGAGATTAGACATATTTTCTCTCGGATTTGACA 358
||||| |||| |||||| ||||||| |||| | |||||| |||| ||||||||| |||||
Sbjct 299 AATGGGTCAAACCCAAAAATAATTATGGGATACTAGACAAATTTGCTCTCGGATATGACA 358
Query 359 AATTATGCGGTAGCTACAAAATCTTGAGGATTTACGATTTCGATAATAAACTCCAAATCT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 AATTATGCGGTAGCTACAAAATCTTGAGGATTTACGATTTCGATAATAAACTAGAAATCT 418
Query 419 ACGATTTGAGCTCTAATTCATGGATGATTCCAAGAGACACTCTTGGACGGGATATAGAGT 478
|||| |||||||||||||||||||||||||| || |||||| |||||||||||| |||||
Sbjct 419 ACGAATTGAGCTCTAATTCATGGATGATTCCTAGTGACACTTTTGGACGGGATAAAGAGT 478
Query 479 ATATGCAAAATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAGAGATAAACAAT 538
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 479 GTATGCAACATGGCGTGTCTTCCAAGGGAAATACTTATTGGTGTGCTAGAGATAAAGAAT 538
Query 539 CACAATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCGGACCGCGTCTAC 598
||||||||||| | |||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 539 CACAATATTGTAATCTGTTCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGCCTGC 598
Query 599 CACTGCCCTTCAATGGAGCTTATGTGTCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAG 658
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
Sbjct 599 CACTGCCCTTCAATGGAACTTATGTGTCTCTATCTACGGTTAAAGAAGAGCAGCTTACGG 658
Query 659 TGTTATTTCAGCCATCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGC 718
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGTTATTACAGCCGTCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGC 718
Query 719 CTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGAAATGAA 761
|||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 719 CTGATGAAGTGTCGTGGAGCATCTTCTTGAAAGTTGAAATGAA 761
Score = 130 bits (70), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 805 AAATTCGCAGTTGTTTTTGATAAAGACAAGGCAAAGGGGTTTAAAACCAATTACGACATA 864
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 763 AAATTCGCAGTTGTTTTTGATAAAGACAAGGGAAAGGGGTTTAAAACCATTTACAACATA 822
Query 865 GCTTACGTCATTGGAGAAAATG 886
||||||||||||||||| ||||
Sbjct 823 GCTTACGTCATTGGAGAGAATG 844
> Ahg930018 jgi|Araly1|930018|scaffold_302475.1
Length=1136
Score = 453 bits (245), Expect = 1e-126
Identities = 692/897 (77%), Gaps = 74/897 (8%)
Strand=Plus/Plus
Query 122 ACAACAACATTGATCTATCTATAAAGTGTAGAGGTAGACTTATTAGCAGAGACGAAACAG 181
|||||||||||||||||||||||||| | ||||| |||||| ||| |||| | |||
Sbjct 257 ACAACAACATTGATCTATCTATAAAGCAAAAAGGTAAACTTATCAGCCTAGACTATTCAG 316
Query 182 CTCAGGGAT-TC-T--ATGT--GTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCG 235
| | | || || | || | ||||| |||||||||||| ||||||||||||||
Sbjct 317 ATGAAGAATATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTA---- 372
Query 236 TATCAGGAAAAACTATTGATGACACTAGGCTT-GTGGTTTGTAACCCGTAT-GGGGTAAA 293
| || | |||| | ||| | |||| |||||||| ||||||||| |||| ||
Sbjct 373 T-TC--G-TAAAC-------GCCACGA-GCTTAGTGGTTTGGAACCCGTATCGGGG-GAA 419
Query 294 ACCAAAATGGATCAATCCCAAAGATAATTACG-GGAGATTA-GACATATTTTCTCTCGGA 351
|||||||| ||||| | | | | | | | | | | || || || || || |||||
Sbjct 420 ACCAAAATACATCAAACGC--GGGT-A-T--GTGCA-ACTAGGA-ATGTTCGCTTTCGGA 471
Query 352 TTTGACAAATTATGCGGTAGCTACAAAATCTTGAGGATTTAC-G--ATT-TCGATAATAA 407
| ||||||| ||||||||| ||||||| |||||| ||| | | ||| | | ||| |
Sbjct 472 TACGACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTACCTA-AAT-A 529
Query 408 AC-TCCAAATCTACGATTTGAGCTCTAATTCATGGATGATTCCAAGAGACACTCTTGGAC 466
|| || ||||||| |||||||||||||||||||||||| |||| || | || ||||| |
Sbjct 530 ACATCGAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCTTGAAT 589
Query 467 GGGATATAGA-GTATATGCAAAATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCT 525
||| ||| || |||||||| | |||||||||||| |||| ||||||||| ||||||| |
Sbjct 590 GGGGTAT-GATGTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGT 648
Query 526 -AGAGATAAACAATCACAATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATT 584
|| ||||| ||||| | ||| | ||| ||||||||||||||||||| ||||| ||
Sbjct 649 AAG-GATAAGGAATCAGTAGATTATCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTT 707
Query 585 CGGACCGCGTCTACCACTGCCCTTCAATGGAGCTT-ATGTGTCTCTATCTGCGGTTAAAG 643
||||||||||| | |||||| |||| ||| || ||| |||||||||||| |||||||
Sbjct 708 TGGACCGCGTCTGCTTCTGCCCATCAAAGGA-TTTGATGGGTCTCTATCTGCAGTTAAAG 766
Query 644 AAGAGCAGCTTGCAGTGTTATTTCAGCCATCGGATAAATCTGAGATAGAGATTTGGGTTA 703
|||||||||| ||||||||| || ||| | |||| ||||| |||||||||||||||||
Sbjct 767 AAGAGCAGCTAGCAGTGTTAATTAAGCGGTATGATATATCTGCGATAGAGATTTGGGTTA 826
Query 704 CGAACAAGATTGAGCCTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGAAATGAAAC 763
||||||||||||||||||| | |||||||||| | ||||||| ||| |||| ||||| |
Sbjct 827 CGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTGATATGAACC 886
Query 764 TACGTG-TTCTGTCTTG-GAATTTCTTGATTGACAAGGAAA-AGAAATTCGCAGTTGTTT 820
|| ||| || || || | |||||||||||||||| |||| | | ||| ||||||| ||||
Sbjct 887 TATGTGATTATG-CT-GCGAATTTCTTGATTGACGAGGAGATA-AAAGTCGCAGTGGTTT 943
Query 821 TTGATAAAGACAAGGCAAAGGGGT-T--TAAAA-C-CA---A-TTAC---GACATAGCTT 868
|||||| || || |||| |||| | |||| | || | |||| ||||||||||
Sbjct 944 TTGATACAGTCAGGGCATGGGGGAGTCCTAAACTCACACTCACTTACACCGACATAGCTT 1003
Query 869 ACGTCATTGGAGAAAATGGTTATTACAGAAGAGTGGATCTCCGTGAATCTCCAAACAAAC 928
|| |||||||||| ||||||| || |||||||||||||||||| |||||| | || |
Sbjct 1004 ACATCATTGGAGAGAATGGTTGTTTTAGAAGAGTGGATCTCCGTAAATCTCGATACCCAT 1063
Query 929 CACTTTG-CCGTATTGTGTCTTG-T-T-ATGTTCCAAGTTGTGTGCAAATCGAGTAA 981
||| | | || | | || |||| | | |||||||||||| |||||||||| |||||
Sbjct 1064 CACCTCGTCC--ACT-TG-CTTGCTCTTATGTTCCAAGTTCTGTGCAAATCAAGTAA 1116
> Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216
Length=1044
Score = 440 bits (238), Expect = 8e-123
Identities = 589/751 (78%), Gaps = 53/751 (7%)
Strand=Plus/Plus
Query 265 CTTGTGG--TT-TGTAACCCGTA-TGGGGTAAAACCA-AAATGGATCAATCCCA-AAGAT 318
||||||| || | ||||||||| ||||| ||| || |||||| |||| | || || ||
Sbjct 301 CTTGTGGTTTTATTTAACCCGTATTGGGG-GAAA-CATAAATGGTTCAAACGCACAA-AT 357
Query 319 AATTACGGGAGATTAGACATATTTTCTCTCGGATTTGACAAATTATGCGGTAGCTACAAA 378
||||| |||||||| |||| |||| || |||||| ||||||| ||||||||| |||||
Sbjct 358 AATTATGGGAGATTCGACAAATTTGCTTTCGGATACGACAAATCCTGCGGTAGCCACAAA 417
Query 379 ATCTTGAGGATTTAC---GATT-TCGATAATAAAC-TCCAAATCTACGATTTGAGCTCT- 432
|| |||||| ||| | |||| | | ||| ||| | |||||||| |||||||||||
Sbjct 418 ATATTGAGGCTTTTCGGTGATTACCTA-AAT-AACATAGAAATCTACAATTTGAGCTCTG 475
Query 433 A-----ATTCATGGATGATTCCAAGAGACACTCTTGGACGGGATATAGAGTATATGCAAA 487
| ||||||||||| |||| || | |||||||| | ||||||||| | |||||||
Sbjct 476 ATTCTGATTCATGGATGGTTCCTAGTGTCACTCTTGAATGGGATATAGTGGATATGCATG 535
Query 488 ATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAGAGATAAACAATCACAATATT 547
||| |||||||| |||| ||||| || |||| ||||| ||||||| ||||| || |||
Sbjct 536 ATGACGTGTCTTTGAAGGGCAATACATACTGGTATGCTAAAGATAAAGAATCAGAAGATT 595
Query 548 GTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCGGACCGC----G--TCTACCAC 601
|| ||| || ||||||||||||||||| |||||||||||||||| | ||| || |
Sbjct 596 ATTATTTATTATGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTTTGCCTCTTCCTC 655
Query 602 TGCCC-T--TCAATGGAGCTTATGTGTCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAG 658
|||| | |||||| || || || ||||||||||| |||| ||||||| |||||||||
Sbjct 656 AGCCCTTCATCAATGAAGGTTGTGGGTCTCTATCTGTGGTTGGAGAAGAGAAGCTTGCAG 715
Query 659 TGTTATTTCAGCCA-TCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAG 717
||||||| ||| || | || | ||| || || |||||||||||||||||||||||||||
Sbjct 716 TGTTATTACAG-CATTGGGGTGCATCAGAAATGGAGATTTGGGTTACGAACAAGATTGAG 774
Query 718 CCTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGA-AATGAAACTACGT-GTTCTGT 775
||||| ||||||||||||||| |||||||||||| | || || | || | ||| | |
Sbjct 775 CCTGATGAAGTGTCGTGGAGCAAGTTCTTGAAAGTTTATAA-GAGGCCACATTGTTTT-T 832
Query 776 -C-TTG-GAATTTCTTGATTGAC-AAGGAAAAGAAATTCGCAGTTGTTTTTGATAAAGAC 831
| ||| ||||||||||||||| ||| | |||||| ||||||| ||||||||| | |
Sbjct 833 ACGTTGCGAATTTCTTGATTGAGGAAG-AGAAGAAAGTCGCAGTGGTTTTTGATGATTAT 891
Query 832 AAGGCAAAGGGGTTTAAAACCAAT-TACGACAT-A--GCTTACGTCATTGGAGAAAATGG 887
|| ||||| | |||||| ||||| | | || | |||||| ||||| |||| |||||
Sbjct 892 GAGACAAAGAGTTTTAAATCCAATATT-GTCAGCAACGCTTACATCATTAGAGAGAATGG 950
Query 888 TTATTACAGAAGAGTGGATCTCCGTGAATCTCCAAACA-AACCACTTTGCCGTATTG-T- 944
||||| ||||| |||||||||| |||||| |||| ||| ||| || |||| || ||| |
Sbjct 951 TTATTTCAGAACAGTGGATCTCAGTGAATATCCATACACAAC-ACGTTGCGGTCTTGCTT 1009
Query 945 GTCTTGTTATGTTCCAAGTTGTGTGCAAATC 975
| || |||||| ||||||| ||||||||||
Sbjct 1010 G-CTC-TTATGTACCAAGTTCTGTGCAAATC 1038
> Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1
Length=1128
Score = 281 bits (152), Expect = 5e-75
Identities = 691/933 (74%), Gaps = 110/933 (12%)
Strand=Plus/Plus
Query 122 ACAACAACATTGATCTATCTATAAAG-TGTAGAGGTAGACTTATTAGCAGAGACGAAACA 180
||||||| |||||||||||||| || | || ||||| |||| ||||||||||| |||||
Sbjct 233 ACAACAATGTTGATCTATCTATAGAGCT-TAAAGGTAAACTTGTTAGCAGAGACAAAACA 291
Query 181 GCTCAGGGATTCTATGTGTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCGTATCA 240
| | | |||| | ||||||||| |||||||||| ||| |||| |||| || | |
Sbjct 292 GATGATTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCA-C- 349
Query 241 GGAAAAACTATTGATGACACTAGGCTTGTGG-TTTGTAACCCGTA-TGGGGTA-AAACCA 297
|| || | | | | | |||||||| |||| |||||||| ||||| | ||| ||
Sbjct 350 GG--GAA--A---A--A-A-T--GCTTGTGGTTTTG-AACCCGTATTGGGG-ACAAA-CA 393
Query 298 AAATGGATCAATCCCAAAGA--TAATTACGGGAGATTAGACATATTTTCTCTCGGATTTG 355
||||||||| || || |||| | || |||| | | ||||| | | ||||||| | |
Sbjct 394 AAATGGATC-ATGCC-AAGACCTCCTTTCGGGTGCTCAGACAGGTATGCTCTCGGCTACG 451
Query 356 ACAAAT-TATGCGGTAGCTACAAAATCTTGAGGATTTACGAT-TT--CGATAATAAACTC 411
|||||| | |||||||| |||||||| ||||| ||| || | || | | || || |||
Sbjct 452 ACAAATCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTC 510
Query 412 CAAATCTACGATTTGAGCTCTAATTCATGGATGATTCC--AAGA-GACACTCTTGGACGG 468
| | |||||||||||||||| |||||||||| |||| | || | |||||||| | ||
Sbjct 511 GATGTATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGG 570
Query 469 GATATAGAGTATATGCAA-AATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAG 527
||||| | ||||||||| || |||||||||| |||| | ||||||| |||| |||||
Sbjct 571 GATAT--A-TATATGCAACAA-GGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAA 626
Query 528 AGATAAACAATCACA-ATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCG 586
|||| | | ||| | | || ||| || || ||||||||||||||||| |||||||| |
Sbjct 627 AGATGAGGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTG 685
Query 587 GACC------GCGTCTACCACTGCCCTTCAAT---GG--A-G--CT-T----A---TGTG 624
|||| || ||| || | |||||| ||| || | | || | | | ||
Sbjct 686 GACCGTGTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATG 745
Query 625 --TCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAGTGTTATTTCAGCCATCGGATA-AA 681
||||||||| |||| ||||||| ||||||| |||||||| |||| | ||||| ||
Sbjct 746 CAACTCTATCTGTAGTTACAGAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAA 805
Query 682 TCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGCCTGAAGAAGTGTCGTGGAGCGTC 741
| | | | ||||||||||||||||||||||||||||| | ||||| |||||| ||
Sbjct 806 -C-G-G-T---TATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATC 858
Query 742 TTCTTGAAA---G-T-TGA-AATGAAACTAC-GTGTTC-TGTCT-TG-GAATTTCTTGAT 791
||||| ||| | | ||| |||| ||| | | ||| | || | ||||||||| ||
Sbjct 859 TTCTTAAAACTTGATATGATAATGGAACCAAAGA-TTCATCACTATCAGAATTTCTTCAT 917
Query 792 TGACAAGGAAAAGAAATTCGCAGTTGTTTTTGATAAAGACAAGG-CA----AA---GG-- 841
|||| ||||||||||| |||||||||||||||| |||||||| | || || ||
Sbjct 918 TGACGAGGAAAAGAAAGTCGCAGTTGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCC 977
Query 842 G----G--T-TT-AAAACCAATTACGACATAGCTTACGTCATTGGAGAAAATGGTTATTA 893
| | | || ||||||| |||| ||| ||||||| || |||||| ||||||||||
Sbjct 978 GCCTTGGATGTTTAAAACCATTTACAACAGAGCTTACATCGCTGGAGAGAATGGTTATTT 1037
Query 894 CAGAAGAGTGGATCTCCGTGAATCTCCAAACAAAC--CA-CTTTGCCGTATTGTGT-CTT 949
|||||| |||||||| | | |||||||||||| || || ||| |||| |||||| ||
Sbjct 1038 CAGAAGTGTGGATCTTCTTAAATCTCCAAACACACGACAACTTGGCCGCCTTGTGTGCTC 1097
Query 950 GTTATGTTCCAAGTTGTGTGCAAA-TCGAGTAA 981
|||||||||||||| | || ||| || |||||
Sbjct 1098 -TTATGTTCCAAGTTCTATG-AAAGTCAAGTAA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5