BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20705.1 Length=1137 Score E Sequences producing significant alignments: (Bits) Value Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218 1413 0.0 Ahg930018 jgi|Araly1|930018|scaffold_302475.1 656 0.0 Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 464 6e-130 Ahg929852 jgi|Araly1|929852|scaffold_302309.1 102 5e-21 Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 76.8 3e-13 Ahg925743 jgi|Araly1|925743|scaffold_201304.1 75.0 1e-12 Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 69.4 5e-11 Ahg929120 jgi|Araly1|929120|scaffold_301577.1 67.6 2e-10 Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 67.6 2e-10 Ahg929853 jgi|Araly1|929853|scaffold_302310.1 65.8 7e-10 Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 65.8 7e-10 Ahg930371 jgi|Araly1|930371|scaffold_302828.1 52.8 5e-06 > Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218 Length=1101 Score = 1413 bits (765), Expect = 0.0 Identities = 998/1108 (90%), Gaps = 26/1108 (2%) Strand=Plus/Plus Query 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTGTGACG 60 |||||||| ||||||||| | |||||||||||||||||||||| | | | || ||| || Sbjct 4 ATGATGTCCAATCTTCCACAGGATTTGGTTGAGGAGATTCTCTAT-GAG-AACAGTG-CG 60 Query 61 -TTTATGAG-AACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGATAGGA 118 | ||| | || | |||||||||||||||||| |||||||||||| |||||||| || Sbjct 61 ATCTATTTGCAA-A-AGCGATCTATTTGCAAAAACTGGAACGCTTTATCCAAAGATCCGA 118 Query 119 GCTTTACAAATAAGTACATCCGCAATATAGCCGCATTAGGGGAAAGAGAGTTTCTGATGA 178 |||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 119 TCTTTACAAATAATTACATCCGCAATGTAGCCGCATCAGGGGAAAGAGAGTTTCTGATGA 178 Query 179 TCAAGGAATTTAGTATTTATTTGGTAGGCGTCAATCTCCATGGTATTCAAAACAACAACT 238 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 179 TCAAGGAATTTAGTGTTTATTTGGTCGGCGTCAATCTCCATGGTATTCAAAACAACAA-T 237 Query 239 -TTGATCTCTCTATAGAA-CTTAAAGGTAAACTTATTAGCATGGACAATACAATTCGGAG 296 ||| ||| |||||| || | |||||||| |||||||||||||||||||||| ||||||| Sbjct 238 GTTGGTCTATCTATA-AAGCGTAAAGGTAGACTTATTAGCATGGACAATACAGTTCGGAG 296 Query 297 ATTCTGTATATCTCAAATCTTTCACTGCAATGGCTTATTTTTATGTGTTTC-ACAAAAAG 355 |||||||||||| ||| |||||||||||||||| ||||| |||| ||||| |||| Sbjct 297 ATTCTGTATATCCCAAGTCTTTCACTGCAATGGTTTATTGCTATGCGTTTCGGGGAAAA- 355 Query 356 ACATGG---ATAATAGGCTTGTGGTTTGGAACCCGTATTGTTCG-AAACCAAGATGGATC 411 |||||| |||||||||||| ||||||||| ||||| |||| | ||||||| ||||||| Sbjct 356 ACATGGATAATAATAGGCTTGCGGTTTGGAATCCGTACTGTT-GCAAACCAAAATGGATC 414 Query 412 AAA--C-CCAG-T-TA-TAATTATAGGACAGTTGACAGGTTTGCTCTCGGATATGACAAA 465 ||| | |||| | || | ||||| |||||| || |||||||||||||||||||||||| Sbjct 415 AAACCCACCAGATATACTTATTATGGGACAGCAGAGAGGTTTGCTCTCGGATATGACAAA 474 Query 466 TCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAATC 525 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 475 TCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACATCGAAATC 534 Query 526 TACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGATATAGTA 585 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 TACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGATATAGTG 594 Query 586 TATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAAAGAA 645 |||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 595 TATATGCAACAAGGTGTGTCTTTGAAGGAAAAGACTTATTGGTATGCTAGAGATAAGGAA 654 Query 646 TCAGAAAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTG 705 |||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 655 TCAGAAGATAAATACTTATTTTCTTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTG 714 Query 706 CCTTTGCCCTTCATGAATTTGGATGATGTGTCTCTATCTGTGGTCAAAGAAGAGAAGCTT 765 ||||||||||||||| |||| |||||||| ||||||||||| || ||||||||| ||||| Sbjct 715 CCTTTGCCCTTCATGTATTTCGATGATGTATCTCTATCTGTTGTTAAAGAAGAGCAGCTT 774 Query 766 GCGATGTTATTAAAGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGACAAGATT 825 ||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 775 GCGGTGTTAGTAAAGAGGTGGGATACATGTGAGATGGAGATTTGGGTGACGGACAAGATT 834 Query 826 GAGCCCGATGTGTCGTGGAGCAAGTTCTTAAAAGTTGGTATTAAACCACGTTTTGATTTT 885 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 835 GAGCCCGATGTGTCGTGGAGCAGGTTCTTAAAAGTTGATATTAAACCACGTTTTGATTTT 894 Query 886 GCAAATTTCGTCGTGATTGATGTGGTGAAGAAAGTCGCATTGGTTTTTGATAAAAACAAG 945 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 895 GCAAATTTCGCCGTGATTGATGTGGAGAAGAAAGTCGCATTGGTTTTTGATAAAAATGAG 954 Query 946 GCAGAGAAGTTTCAATACAGTTACAACATAGCTTACATCATCGGAGAGAAAGGTTATTGT 1005 ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| || | Sbjct 955 GCAGAGAAGTTGCAATCCAGTTACAGCATAGCTTACATCATCGGAGAGAAAGGTTGTT-T 1013 Query 1006 -AGAGAAGTGGATCTCGGTGAATCTCCATACACGCCACTTTCCTATCTTGCGTGCTCTTA 1064 | |||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| Sbjct 1014 CAAAGAAGTGGATCTCGGTGAATCTCCATACACACCACTTTCCTGTCTGGCATGCTCTTA 1073 Query 1065 TGTTCCAAGTTACGTGCAACTCGAGTAA 1092 |||||||||||||||||| ||| ||||| Sbjct 1074 TGTTCCAAGTTACGTGCAGCTCAAGTAA 1101 > Ahg930018 jgi|Araly1|930018|scaffold_302475.1 Length=1136 Score = 656 bits (355), Expect = 0.0 Identities = 905/1154 (78%), Gaps = 103/1154 (9%) Strand=Plus/Plus Query 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59 |||||||| ||||||||| ||||||||| ||||||||||||||||||||| | | |||| Sbjct 25 ATGATGTCCAATCTTCCACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTGAC 83 Query 60 GT-TTATGAGAA-CAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGAT-AG 116 | || ||| || |||||||||||| |||||||||||||||||||||||||||| || || Sbjct 84 ATCTT-TGA-AATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTTTAACCAAATATCAG 141 Query 117 GAGCTTTACAAATAAGTACATCCGCAATATAGCC-GCATTAGGGGAAAGAGAGTTTCTGA 175 || |||||||||||| ||||||||||| |||| | || |||||||||||||||||||| Sbjct 142 -AGTTTTACAAATAAGCACATCCGCAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCTGA 199 Query 176 T---GATCAAGGAATTTAGTAT-TTATTTGGTAGGCGTCAATCTCCATGGTATTCAAAAC 231 | ||||| ||| | ||| | ||||||| | ||||||||||||||||| ||||||||| Sbjct 200 TCATGATCATGGAGTATAG-AGCTTATTTGATTGGCGTCAATCTCCATGGAATTCAAAAC 258 Query 232 AACAACTTTGATCTCTCTATAGAA-CTTAAAGGTAAACTTATTAGCATGGACAATACA-A 289 |||||| ||||||| |||||| || | |||||||||||||| ||| | ||| || || | Sbjct 259 AACAACATTGATCTATCTATA-AAGCAAAAAGGTAAACTTATCAGCCTAGACTATTCAGA 317 Query 290 TTCGGAGA-T-TCTGTATATCTCAA----A--TCTTTCACTGCAATGGCTTATTTTTATG 341 | | ||| | || ||| |||||| | ||||||||||| |||| ||||| |||| Sbjct 318 T--GAAGAATATC-GTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTAT- 373 Query 342 T-GTTTCACAAAAAGACATGGATAATAGGCTT-GTGGTTTGGAACCCGTATTGTTCGAAA 399 | || | || | || | | | ||| |||||||||||||||||| | |||| Sbjct 374 TCGT---A-AAC--GCCACG-A-----G-CTTAGTGGTTTGGAACCCGTATCGGGGGAAA 420 Query 400 CCAAGATGGATCAAACCCAGTTATAATTATAGGAC-AGTTGACAGGTTTGCTCTCGGATA 458 |||| || ||||||| | | ||| | | || || || | ||| ||| ||||||| Sbjct 421 CCAAAATACATCAAACGCGGGTATG-TGC-A--ACTAG--GA-ATGTTCGCTTTCGGATA 473 Query 459 TGACAAATCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCT 518 |||||||| || |||||||||||||| ||||||||||| ||| || ||||||||||| | Sbjct 474 CGACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTACCTAAATAACAT 533 Query 519 CGAAATCTACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGA 578 ||||||||| ||||||||||| |||||||||| |||||| | || || ||||||| ||| Sbjct 534 CGAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCTTGAATGGGG 593 Query 579 TAT-AGTATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAG 637 ||| | | ||||||| | ||||||||||||||| | ||| |||||||||| || || || Sbjct 594 TATGA-TGTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGTA-AG 651 Query 638 -ATAAAGAATCAGAAAATTGAT-ACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGG 695 |||| ||||||| | ||| || | || | | ||||||||||||||||||||| ||||| Sbjct 652 GATAAGGAATCAGTAGATT-ATCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTTTGG 710 Query 696 ACCGCGTCTGCCTT-TGCCCTTCAT-GAATTTGGATGATGTGTCTCTATCTGTGGTCAAA 753 ||||||||||| || ||||| ||| | ||||| ||| | ||||||||||| || ||| Sbjct 711 ACCGCGTCTGC-TTCTGCCCATCAAAGGATTTG-ATG--G-GTCTCTATCTGCAGTTAAA 765 Query 754 GAAGAGAAGCTTGC-GATGTTA-TTAAAGCGGTGGGATACATGTGAGGTGGAGATTTGGG 811 |||||| |||| || | ||||| |||| ||||| |||| || || | | |||||||||| Sbjct 766 GAAGAGCAGCTAGCAG-TGTTAATTAA-GCGGTATGATATATCTGCGATAGAGATTTGGG 823 Query 812 TGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTAAAAGTTGGTATTA 868 | ||| ||||||||||||| |||| ||||||||| || ||||||||| ||| ||| | Sbjct 824 TTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTGATATGA 883 Query 869 AACC-ACGTT-TTGATTTTGCAAATTTCGTCGTGATTGATGTGGTGA-AGAAAGTCGCAT 925 | || | || || || ||| |||||| | ||||||| | || || | ||||||||| Sbjct 884 A-CCTATGTGATT-ATGCTGCGAATTTC-T--TGATTGACGAGGAGATA-AAAGTCGCAG 937 Query 926 TGGTTTTTGATAAAAACAAGGCA-GAGA-AGTT-TCAA-T-ACAGT---T-ACA---ACA 973 |||||||||||| | || |||| | | ||| | || | ||| | | ||| ||| Sbjct 938 TGGTTTTTGATACAGTCAGGGCATGGGGGAGTCCTAAACTCACACTCACTTACACCGACA 997 Query 974 TAGCTTACATCATCGGAGAGAAAGGTTATTGTAGA-GAAGTGGATCTCGGTGAATCTCCA 1032 ||||||||||||| |||||||| |||| || |||| || ||||||||| || |||||| | Sbjct 998 TAGCTTACATCATTGGAGAGAATGGTTGTTTTAGAAGA-GTGGATCTCCGTAAATCTCGA 1056 Query 1033 TACACGCCACTT--TCCTATCTTGCGTGCTCTTATGTTCCAAGTTAC-GTGCAACTCGAG 1089 ||| | ||| | ||| | ||||| ||||||||||||||||||| | |||||| || || Sbjct 1057 TACCCATCACCTCGTCC-A-CTTGCTTGCTCTTATGTTCCAAGTT-CTGTGCAAATCAAG 1113 Query 1090 TAAACCA-GATTAT 1102 |||| || |||||| Sbjct 1114 TAAAACAAGATTAT 1127 > Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 Length=1128 Score = 464 bits (251), Expect = 6e-130 Identities = 705/911 (77%), Gaps = 84/911 (9%) Strand=Plus/Plus Query 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59 |||||||||||||||||||| |||||||| ||||||||||||||||||||| | | | | Sbjct 4 ATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTTAA 62 Query 60 GTTTATGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGA-TAGGA 118 | ||||| ||||| |||||| ||||||||| ||||||| | || ||||| | | ||| Sbjct 63 ATACCTGAGAGCAGTGAGATCTACTTGCAAAAATTGGAACGATATATCCAAA-ACTCGGA 121 Query 119 GCTTTACAAATAAGTACATCCG-CAATA-TAGCCGCATTAGGGGAAAGAGAGTTTCTGAT 176 ||||| | ||||| |||| || ||| | | ||| || |||||||| |||||||||||| Sbjct 122 GCTTTGCGAATAAACACAT-CGACAA-AGCAACCGTATCAGGGGAAAAAGAGTTTCTGAT 179 Query 177 GATCA-AGGAATTTAGTATTTATT-TGGTAGGCGTCAATCTCCATGGTATTCAAAACAAC 234 ||||| | |||||| | ||| || ||| ||||||||||||||| | | ||| |||||| Sbjct 180 GATCACA-AAATTTAATGTTT-TTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAAC 237 Query 235 AACT-TTGATCTCTCTATAGAACTTAAAGGTAAACTTATTAGCATG-GACAATACA-ATT 291 || | ||||||| |||||||| ||||||||||||||| |||||| | ||||| ||| | | Sbjct 238 AA-TGTTGATCTATCTATAGAGCTTAAAGGTAAACTTGTTAGCA-GAGACAAAACAGA-T 294 Query 292 CGGA--GATTCTGTATATCTCAAATCTTTCACTGCAATGGCT-TATTTTTATGTGTTTCA 348 || |||| | ||||||| || |||||||||| || | |||||||||| | || Sbjct 295 --GATTTATTCCACAAATCTCAAGTCATTCACTGCAACGG-TGTATTTTTATGCG---CA 348 Query 349 CAAAAAGACATGGATAATAGGCTTGTGGTTTGGAACCCGTATTGTTCGA-AACCAAGATG 407 | | ||| || | ||||||||||| |||||||||||| || || ||| ||| Sbjct 349 C-----G----GGAAAAAATGCTTGTGGTTTTGAACCCGTATTG-GGGACAAACAAAATG 398 Query 408 GATCAAACCCAGTTATAATTATAGGACAG-T-TGACAGGTTTGCTCTCGGATATGACAAA 465 ||||| || || | || | || | | ||||||| ||||||||| || |||||| Sbjct 399 GATCATGCCAAGACCTCCTT-TCGG-GTGCTCAGACAGGTATGCTCTCGGCTACGACAAA 456 Query 466 T-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAAT 524 | || | ||||||||||||||| |||||||||| |||| ||||| ||| |||||||| | Sbjct 457 TCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGT 515 Query 525 CTACGATTTGAGCTCGAATTCATGGAGGGTTCCT-A--ATGTCACTCTTGAACGGGATAT 581 |||||||||||||| | |||||||| ||||||| | |||||||||||||| ||| || Sbjct 516 ATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGGG--AT 573 Query 582 AGTATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAA 641 | |||||||||||| |||||||||||||| | | | |||||||||||||||| |||| | Sbjct 574 A-TATATATGCAACAAGGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGA 632 Query 642 AGAATCAGA-AAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGC 700 || ||| | | || | ||||| || | ||||||||||||||||||||||||||||||| Sbjct 633 GGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGT 691 Query 701 GTCTGCCT-T---T--GCCCTTCA-TGAA--TT-TGG---ATG-AT-G-TG-T-C---TC 739 || ||||| | | |||||| | |||| || || || | | | | | || Sbjct 692 GTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATGCAACTC 751 Query 740 TATCTGTGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAAAGCGGTGGGATACATGTGAG 798 ||||||| || | ||||||||||||||| | |||||||| |||||||||||||| | | Sbjct 752 TATCTGTAGTTACAGAAGAGAAGCTTGCTG-TGTTATTACAGCGGTGGGATACAAC-G-G 808 Query 799 GTGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTA 855 | | ||||||| ||| ||||||||||||| |||| |||| ||||||| |||||| Sbjct 809 TT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTA 864 Query 856 AAAGTTGGTAT 866 ||| ||| ||| Sbjct 865 AAACTTGATAT 875 > Ahg929852 jgi|Araly1|929852|scaffold_302309.1 Length=1123 Score = 102 bits (55), Expect = 5e-21 Identities = 164/213 (77%), Gaps = 21/213 (10%) Strand=Plus/Plus Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTC-TGCCTTTGCCCTT-CA-TGAA-T- 723 |||||||||||||||||||||||||||||||| || | ||| |||| || || | | Sbjct 677 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCTGCCATTTCACTCTTGTC 735 Query 724 TTGGATGATG-TGTC-T-CTATCTG-TGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAA 778 ||| ||||| ||| | |||||| | || | |||||||||||||| | ||||||| | Sbjct 736 TTG-ATGATTCTGTAATTCTATCTACTCTTCGA-GAAGAGAAGCTTGCTG-TGTTATTTA 792 Query 779 AGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGAC-AAGATTGA-GCCCGAT-- 834 || |||| ||| ||||||| || | || ||| | || || |||||||| ||| || Sbjct 793 AGAGGTGTGATGCATGTGATATGAAAATATGGATTACA-ACTAAGATTGATGCCA-ATAC 850 Query 835 -GTGTCGTGGAGCAAGTTCTTAAAAGTTGGTAT 866 ||||| |||||||| ||||||||||||| ||| Sbjct 851 AGTGTCATGGAGCAACTTCTTAAAAGTTGATAT 883 > Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 Length=1167 Score = 76.8 bits (41), Expect = 3e-13 Identities = 156/208 (75%), Gaps = 21/208 (10%) Strand=Plus/Plus Query 665 TTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCCCTTCATGAATT 724 ||| |||||||||||||||||||||||||||||||| | |||||||||| || | | || Sbjct 698 TTTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTA-GCGTT 756 Query 725 TGG-ATGAT----GTGTC-TCT-ATCT-GTGGTCAAAGAAGAGAAGCTTGC-GATGTTAT 775 || || || |||| | | |||| ||| | | ||||||||||||||| | | |||| Sbjct 757 AGGGATCATTCATGTGTGATTTTATCTTGTGTT-AGAGAAGAGAAGCTTGCAGTT-TTAT 814 Query 776 T--AA-AGCGG-TGGG--ATACATGTGAGGTGGAGATTTGGGTGACGGACAAGATTGAGC 829 | || | | || ||| || ||| || || || ||| | |||| ||| ||||| Sbjct 815 TTCAACACCAAATGTATTATAAATATGAAGTTGAAATATGGATTACGGTTAAGCTTGAGA 874 Query 830 CCGA--TG-TGTCGTGGAGCAAGTTCTT 854 |||| || ||||||||||||||||||| Sbjct 875 CCGAAATGGTGTCGTGGAGCAAGTTCTT 902 > Ahg925743 jgi|Araly1|925743|scaffold_201304.1 Length=1229 Score = 75.0 bits (40), Expect = 1e-12 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 665 TTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCC 713 ||| |||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 734 TTTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTGCC 782 > Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 Length=903 Score = 69.4 bits (37), Expect = 5e-11 Identities = 39/40 (98%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCT 708 |||||||||||||||||||||||||||||||| ||||||| Sbjct 618 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCT 657 > Ahg929120 jgi|Araly1|929120|scaffold_301577.1 Length=1237 Score = 67.6 bits (36), Expect = 2e-10 Identities = 156/210 (74%), Gaps = 24/210 (11%) Strand=Plus/Plus Query 670 TTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCCCTT-CA-TG--A-A-T 723 ||||||||||||||||||||||||||||||| ||| ||| |||| || || | | | | Sbjct 690 TTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAAT 749 Query 724 -TTGGA-TGAT-GTGTCTCTATCT-GTGGTCAAAGAAGAGAAGCTTGC-GATGTTAT-TA 777 || || | | |||||||||||| ||| | | ||| ||| |||| || | |||||| | Sbjct 750 GTTAGACTTTTTGTGTCTCTATCTTGTGTT-AGAGACGAGCAGCTCGCTG-TGTTATATC 807 Query 778 AAGCGGTGGGATACATGTGA-GGT---G--GAGATTTGGGTGACGGACAAGATTGAGCCC 831 || || | ||| |||| ||| || | ||| |||| || || || |||||||| ||| Sbjct 808 AA-CGCTTGGACACATATGATGGGACAGTCGAGTTTTGTGTTACAGATAAGATTGATCCC 866 Query 832 GATG-TGT--CGTGGAGCAAGTTCTTAAAA 858 ||| ||| | ||||||| ||| || ||| Sbjct 867 AATGCTGTGTCTTGGAGCATGTTTTTGAAA 896 > Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 Length=1608 Score = 67.6 bits (36), Expect = 2e-10 Identities = 42/45 (93%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCC 713 |||||||||||||||||||||||||||||||| | ||||| |||| Sbjct 1134 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTCTGCC 1178 > Ahg929853 jgi|Araly1|929853|scaffold_302310.1 Length=935 Score = 65.8 bits (35), Expect = 7e-10 Identities = 159/214 (74%), Gaps = 28/214 (13%) Strand=Plus/Plus Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCT-TTGCCCTT---C-ATGAA- 722 |||||||||||||||||||||||||||||||| ||| ||| || || || | |||| Sbjct 539 TTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTT-CCATTTTACTATGATG 597 Query 723 TTTGG-ATGAT---GTG--TCTCTAT-CTGTGGTCAAAGAAGAG-AAGCTTGCGATGTTA 774 ||| ||||| ||| ||||| | |||| | | ||||||| || |||||| ||||| Sbjct 598 TTTCACATGATTTTGTGGGTCTCTCTTCTGT--T-AGAGAAGAGCAA-CTTGCGGTGTTA 653 Query 775 TTA-AAGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGACA-AGATTGAGCCCG 832 || || | |||||| |||| | ||||| ||| ||| ||| ||||||||||| Sbjct 654 TTTGAATATTTTA-ATACATCTGAGATAGAGATATGGACGACA-ACAGAGATTGAGCCCA 711 Query 833 ATGTG-T--CGTGGAG-CAAGTTCTTAAAAGTTG 862 ||||| | |||||| | ||||||||||||| Sbjct 712 ATGTGGTGTCGTGGATACCC-TTCTTAAAAGTTG 744 > Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 Length=1782 Score = 65.8 bits (35), Expect = 7e-10 Identities = 43/47 (91%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 65 TGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAA 111 ||| |||||||||||||||||||||||||||||| ||||| ||||| Sbjct 785 TGAAAACAGTGCGATCTATTTGCAAAAAGTGGAATACTTTATCCAAA 831 > Ahg930371 jgi|Araly1|930371|scaffold_302828.1 Length=984 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 366 TAGGCTTGTGGTTTGGAACCCGTATTGT 393 |||||||||||||||||||||||||||| Sbjct 334 TAGGCTTGTGGTTTGGAACCCGTATTGT 361 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42392683704 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5