BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20705.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218 1413 0.0
Ahg930018 jgi|Araly1|930018|scaffold_302475.1 656 0.0
Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 464 6e-130
Ahg929852 jgi|Araly1|929852|scaffold_302309.1 102 5e-21
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 76.8 3e-13
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 75.0 1e-12
Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 69.4 5e-11
Ahg929120 jgi|Araly1|929120|scaffold_301577.1 67.6 2e-10
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 67.6 2e-10
Ahg929853 jgi|Araly1|929853|scaffold_302310.1 65.8 7e-10
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 65.8 7e-10
Ahg930371 jgi|Araly1|930371|scaffold_302828.1 52.8 5e-06
> Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218
Length=1101
Score = 1413 bits (765), Expect = 0.0
Identities = 998/1108 (90%), Gaps = 26/1108 (2%)
Strand=Plus/Plus
Query 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTGTGACG 60
|||||||| ||||||||| | |||||||||||||||||||||| | | | || ||| ||
Sbjct 4 ATGATGTCCAATCTTCCACAGGATTTGGTTGAGGAGATTCTCTAT-GAG-AACAGTG-CG 60
Query 61 -TTTATGAG-AACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGATAGGA 118
| ||| | || | |||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 61 ATCTATTTGCAA-A-AGCGATCTATTTGCAAAAACTGGAACGCTTTATCCAAAGATCCGA 118
Query 119 GCTTTACAAATAAGTACATCCGCAATATAGCCGCATTAGGGGAAAGAGAGTTTCTGATGA 178
|||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 119 TCTTTACAAATAATTACATCCGCAATGTAGCCGCATCAGGGGAAAGAGAGTTTCTGATGA 178
Query 179 TCAAGGAATTTAGTATTTATTTGGTAGGCGTCAATCTCCATGGTATTCAAAACAACAACT 238
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 179 TCAAGGAATTTAGTGTTTATTTGGTCGGCGTCAATCTCCATGGTATTCAAAACAACAA-T 237
Query 239 -TTGATCTCTCTATAGAA-CTTAAAGGTAAACTTATTAGCATGGACAATACAATTCGGAG 296
||| ||| |||||| || | |||||||| |||||||||||||||||||||| |||||||
Sbjct 238 GTTGGTCTATCTATA-AAGCGTAAAGGTAGACTTATTAGCATGGACAATACAGTTCGGAG 296
Query 297 ATTCTGTATATCTCAAATCTTTCACTGCAATGGCTTATTTTTATGTGTTTC-ACAAAAAG 355
|||||||||||| ||| |||||||||||||||| ||||| |||| ||||| ||||
Sbjct 297 ATTCTGTATATCCCAAGTCTTTCACTGCAATGGTTTATTGCTATGCGTTTCGGGGAAAA- 355
Query 356 ACATGG---ATAATAGGCTTGTGGTTTGGAACCCGTATTGTTCG-AAACCAAGATGGATC 411
|||||| |||||||||||| ||||||||| ||||| |||| | ||||||| |||||||
Sbjct 356 ACATGGATAATAATAGGCTTGCGGTTTGGAATCCGTACTGTT-GCAAACCAAAATGGATC 414
Query 412 AAA--C-CCAG-T-TA-TAATTATAGGACAGTTGACAGGTTTGCTCTCGGATATGACAAA 465
||| | |||| | || | ||||| |||||| || ||||||||||||||||||||||||
Sbjct 415 AAACCCACCAGATATACTTATTATGGGACAGCAGAGAGGTTTGCTCTCGGATATGACAAA 474
Query 466 TCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAATC 525
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 TCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACATCGAAATC 534
Query 526 TACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGATATAGTA 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGATATAGTG 594
Query 586 TATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAAAGAA 645
|||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 595 TATATGCAACAAGGTGTGTCTTTGAAGGAAAAGACTTATTGGTATGCTAGAGATAAGGAA 654
Query 646 TCAGAAAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTG 705
|||||| || |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 655 TCAGAAGATAAATACTTATTTTCTTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTG 714
Query 706 CCTTTGCCCTTCATGAATTTGGATGATGTGTCTCTATCTGTGGTCAAAGAAGAGAAGCTT 765
||||||||||||||| |||| |||||||| ||||||||||| || ||||||||| |||||
Sbjct 715 CCTTTGCCCTTCATGTATTTCGATGATGTATCTCTATCTGTTGTTAAAGAAGAGCAGCTT 774
Query 766 GCGATGTTATTAAAGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGACAAGATT 825
||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 775 GCGGTGTTAGTAAAGAGGTGGGATACATGTGAGATGGAGATTTGGGTGACGGACAAGATT 834
Query 826 GAGCCCGATGTGTCGTGGAGCAAGTTCTTAAAAGTTGGTATTAAACCACGTTTTGATTTT 885
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 835 GAGCCCGATGTGTCGTGGAGCAGGTTCTTAAAAGTTGATATTAAACCACGTTTTGATTTT 894
Query 886 GCAAATTTCGTCGTGATTGATGTGGTGAAGAAAGTCGCATTGGTTTTTGATAAAAACAAG 945
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 895 GCAAATTTCGCCGTGATTGATGTGGAGAAGAAAGTCGCATTGGTTTTTGATAAAAATGAG 954
Query 946 GCAGAGAAGTTTCAATACAGTTACAACATAGCTTACATCATCGGAGAGAAAGGTTATTGT 1005
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 955 GCAGAGAAGTTGCAATCCAGTTACAGCATAGCTTACATCATCGGAGAGAAAGGTTGTT-T 1013
Query 1006 -AGAGAAGTGGATCTCGGTGAATCTCCATACACGCCACTTTCCTATCTTGCGTGCTCTTA 1064
| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||
Sbjct 1014 CAAAGAAGTGGATCTCGGTGAATCTCCATACACACCACTTTCCTGTCTGGCATGCTCTTA 1073
Query 1065 TGTTCCAAGTTACGTGCAACTCGAGTAA 1092
|||||||||||||||||| ||| |||||
Sbjct 1074 TGTTCCAAGTTACGTGCAGCTCAAGTAA 1101
> Ahg930018 jgi|Araly1|930018|scaffold_302475.1
Length=1136
Score = 656 bits (355), Expect = 0.0
Identities = 905/1154 (78%), Gaps = 103/1154 (9%)
Strand=Plus/Plus
Query 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59
|||||||| ||||||||| ||||||||| ||||||||||||||||||||| | | ||||
Sbjct 25 ATGATGTCCAATCTTCCACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTGAC 83
Query 60 GT-TTATGAGAA-CAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGAT-AG 116
| || ||| || |||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 84 ATCTT-TGA-AATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTTTAACCAAATATCAG 141
Query 117 GAGCTTTACAAATAAGTACATCCGCAATATAGCC-GCATTAGGGGAAAGAGAGTTTCTGA 175
|| |||||||||||| ||||||||||| |||| | || ||||||||||||||||||||
Sbjct 142 -AGTTTTACAAATAAGCACATCCGCAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCTGA 199
Query 176 T---GATCAAGGAATTTAGTAT-TTATTTGGTAGGCGTCAATCTCCATGGTATTCAAAAC 231
| ||||| ||| | ||| | ||||||| | ||||||||||||||||| |||||||||
Sbjct 200 TCATGATCATGGAGTATAG-AGCTTATTTGATTGGCGTCAATCTCCATGGAATTCAAAAC 258
Query 232 AACAACTTTGATCTCTCTATAGAA-CTTAAAGGTAAACTTATTAGCATGGACAATACA-A 289
|||||| ||||||| |||||| || | |||||||||||||| ||| | ||| || || |
Sbjct 259 AACAACATTGATCTATCTATA-AAGCAAAAAGGTAAACTTATCAGCCTAGACTATTCAGA 317
Query 290 TTCGGAGA-T-TCTGTATATCTCAA----A--TCTTTCACTGCAATGGCTTATTTTTATG 341
| | ||| | || ||| |||||| | ||||||||||| |||| ||||| ||||
Sbjct 318 T--GAAGAATATC-GTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTAT- 373
Query 342 T-GTTTCACAAAAAGACATGGATAATAGGCTT-GTGGTTTGGAACCCGTATTGTTCGAAA 399
| || | || | || | | | ||| |||||||||||||||||| | ||||
Sbjct 374 TCGT---A-AAC--GCCACG-A-----G-CTTAGTGGTTTGGAACCCGTATCGGGGGAAA 420
Query 400 CCAAGATGGATCAAACCCAGTTATAATTATAGGAC-AGTTGACAGGTTTGCTCTCGGATA 458
|||| || ||||||| | | ||| | | || || || | ||| ||| |||||||
Sbjct 421 CCAAAATACATCAAACGCGGGTATG-TGC-A--ACTAG--GA-ATGTTCGCTTTCGGATA 473
Query 459 TGACAAATCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCT 518
|||||||| || |||||||||||||| ||||||||||| ||| || ||||||||||| |
Sbjct 474 CGACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTACCTAAATAACAT 533
Query 519 CGAAATCTACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGA 578
||||||||| ||||||||||| |||||||||| |||||| | || || ||||||| |||
Sbjct 534 CGAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCTTGAATGGGG 593
Query 579 TAT-AGTATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAG 637
||| | | ||||||| | ||||||||||||||| | ||| |||||||||| || || ||
Sbjct 594 TATGA-TGTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGTA-AG 651
Query 638 -ATAAAGAATCAGAAAATTGAT-ACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGG 695
|||| ||||||| | ||| || | || | | ||||||||||||||||||||| |||||
Sbjct 652 GATAAGGAATCAGTAGATT-ATCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTTTGG 710
Query 696 ACCGCGTCTGCCTT-TGCCCTTCAT-GAATTTGGATGATGTGTCTCTATCTGTGGTCAAA 753
||||||||||| || ||||| ||| | ||||| ||| | ||||||||||| || |||
Sbjct 711 ACCGCGTCTGC-TTCTGCCCATCAAAGGATTTG-ATG--G-GTCTCTATCTGCAGTTAAA 765
Query 754 GAAGAGAAGCTTGC-GATGTTA-TTAAAGCGGTGGGATACATGTGAGGTGGAGATTTGGG 811
|||||| |||| || | ||||| |||| ||||| |||| || || | | ||||||||||
Sbjct 766 GAAGAGCAGCTAGCAG-TGTTAATTAA-GCGGTATGATATATCTGCGATAGAGATTTGGG 823
Query 812 TGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTAAAAGTTGGTATTA 868
| ||| ||||||||||||| |||| ||||||||| || ||||||||| ||| ||| |
Sbjct 824 TTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTGATATGA 883
Query 869 AACC-ACGTT-TTGATTTTGCAAATTTCGTCGTGATTGATGTGGTGA-AGAAAGTCGCAT 925
| || | || || || ||| |||||| | ||||||| | || || | |||||||||
Sbjct 884 A-CCTATGTGATT-ATGCTGCGAATTTC-T--TGATTGACGAGGAGATA-AAAGTCGCAG 937
Query 926 TGGTTTTTGATAAAAACAAGGCA-GAGA-AGTT-TCAA-T-ACAGT---T-ACA---ACA 973
|||||||||||| | || |||| | | ||| | || | ||| | | ||| |||
Sbjct 938 TGGTTTTTGATACAGTCAGGGCATGGGGGAGTCCTAAACTCACACTCACTTACACCGACA 997
Query 974 TAGCTTACATCATCGGAGAGAAAGGTTATTGTAGA-GAAGTGGATCTCGGTGAATCTCCA 1032
||||||||||||| |||||||| |||| || |||| || ||||||||| || |||||| |
Sbjct 998 TAGCTTACATCATTGGAGAGAATGGTTGTTTTAGAAGA-GTGGATCTCCGTAAATCTCGA 1056
Query 1033 TACACGCCACTT--TCCTATCTTGCGTGCTCTTATGTTCCAAGTTAC-GTGCAACTCGAG 1089
||| | ||| | ||| | ||||| ||||||||||||||||||| | |||||| || ||
Sbjct 1057 TACCCATCACCTCGTCC-A-CTTGCTTGCTCTTATGTTCCAAGTT-CTGTGCAAATCAAG 1113
Query 1090 TAAACCA-GATTAT 1102
|||| || ||||||
Sbjct 1114 TAAAACAAGATTAT 1127
> Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1
Length=1128
Score = 464 bits (251), Expect = 6e-130
Identities = 705/911 (77%), Gaps = 84/911 (9%)
Strand=Plus/Plus
Query 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59
|||||||||||||||||||| |||||||| ||||||||||||||||||||| | | | |
Sbjct 4 ATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTTAA 62
Query 60 GTTTATGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGA-TAGGA 118
| ||||| ||||| |||||| ||||||||| ||||||| | || ||||| | | |||
Sbjct 63 ATACCTGAGAGCAGTGAGATCTACTTGCAAAAATTGGAACGATATATCCAAA-ACTCGGA 121
Query 119 GCTTTACAAATAAGTACATCCG-CAATA-TAGCCGCATTAGGGGAAAGAGAGTTTCTGAT 176
||||| | ||||| |||| || ||| | | ||| || |||||||| ||||||||||||
Sbjct 122 GCTTTGCGAATAAACACAT-CGACAA-AGCAACCGTATCAGGGGAAAAAGAGTTTCTGAT 179
Query 177 GATCA-AGGAATTTAGTATTTATT-TGGTAGGCGTCAATCTCCATGGTATTCAAAACAAC 234
||||| | |||||| | ||| || ||| ||||||||||||||| | | ||| ||||||
Sbjct 180 GATCACA-AAATTTAATGTTT-TTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAAC 237
Query 235 AACT-TTGATCTCTCTATAGAACTTAAAGGTAAACTTATTAGCATG-GACAATACA-ATT 291
|| | ||||||| |||||||| ||||||||||||||| |||||| | ||||| ||| | |
Sbjct 238 AA-TGTTGATCTATCTATAGAGCTTAAAGGTAAACTTGTTAGCA-GAGACAAAACAGA-T 294
Query 292 CGGA--GATTCTGTATATCTCAAATCTTTCACTGCAATGGCT-TATTTTTATGTGTTTCA 348
|| |||| | ||||||| || |||||||||| || | |||||||||| | ||
Sbjct 295 --GATTTATTCCACAAATCTCAAGTCATTCACTGCAACGG-TGTATTTTTATGCG---CA 348
Query 349 CAAAAAGACATGGATAATAGGCTTGTGGTTTGGAACCCGTATTGTTCGA-AACCAAGATG 407
| | ||| || | ||||||||||| |||||||||||| || || ||| |||
Sbjct 349 C-----G----GGAAAAAATGCTTGTGGTTTTGAACCCGTATTG-GGGACAAACAAAATG 398
Query 408 GATCAAACCCAGTTATAATTATAGGACAG-T-TGACAGGTTTGCTCTCGGATATGACAAA 465
||||| || || | || | || | | ||||||| ||||||||| || ||||||
Sbjct 399 GATCATGCCAAGACCTCCTT-TCGG-GTGCTCAGACAGGTATGCTCTCGGCTACGACAAA 456
Query 466 T-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAAT 524
| || | ||||||||||||||| |||||||||| |||| ||||| ||| |||||||| |
Sbjct 457 TCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGT 515
Query 525 CTACGATTTGAGCTCGAATTCATGGAGGGTTCCT-A--ATGTCACTCTTGAACGGGATAT 581
|||||||||||||| | |||||||| ||||||| | |||||||||||||| ||| ||
Sbjct 516 ATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGGG--AT 573
Query 582 AGTATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAA 641
| |||||||||||| |||||||||||||| | | | |||||||||||||||| |||| |
Sbjct 574 A-TATATATGCAACAAGGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGA 632
Query 642 AGAATCAGA-AAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGC 700
|| ||| | | || | ||||| || | |||||||||||||||||||||||||||||||
Sbjct 633 GGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGT 691
Query 701 GTCTGCCT-T---T--GCCCTTCA-TGAA--TT-TGG---ATG-AT-G-TG-T-C---TC 739
|| ||||| | | |||||| | |||| || || || | | | | | ||
Sbjct 692 GTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATGCAACTC 751
Query 740 TATCTGTGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAAAGCGGTGGGATACATGTGAG 798
||||||| || | ||||||||||||||| | |||||||| |||||||||||||| | |
Sbjct 752 TATCTGTAGTTACAGAAGAGAAGCTTGCTG-TGTTATTACAGCGGTGGGATACAAC-G-G 808
Query 799 GTGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTA 855
| | ||||||| ||| ||||||||||||| |||| |||| ||||||| ||||||
Sbjct 809 TT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTA 864
Query 856 AAAGTTGGTAT 866
||| ||| |||
Sbjct 865 AAACTTGATAT 875
> Ahg929852 jgi|Araly1|929852|scaffold_302309.1
Length=1123
Score = 102 bits (55), Expect = 5e-21
Identities = 164/213 (77%), Gaps = 21/213 (10%)
Strand=Plus/Plus
Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTC-TGCCTTTGCCCTT-CA-TGAA-T- 723
|||||||||||||||||||||||||||||||| || | ||| |||| || || | |
Sbjct 677 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCTGCCATTTCACTCTTGTC 735
Query 724 TTGGATGATG-TGTC-T-CTATCTG-TGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAA 778
||| ||||| ||| | |||||| | || | |||||||||||||| | ||||||| |
Sbjct 736 TTG-ATGATTCTGTAATTCTATCTACTCTTCGA-GAAGAGAAGCTTGCTG-TGTTATTTA 792
Query 779 AGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGAC-AAGATTGA-GCCCGAT-- 834
|| |||| ||| ||||||| || | || ||| | || || |||||||| ||| ||
Sbjct 793 AGAGGTGTGATGCATGTGATATGAAAATATGGATTACA-ACTAAGATTGATGCCA-ATAC 850
Query 835 -GTGTCGTGGAGCAAGTTCTTAAAAGTTGGTAT 866
||||| |||||||| ||||||||||||| |||
Sbjct 851 AGTGTCATGGAGCAACTTCTTAAAAGTTGATAT 883
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 76.8 bits (41), Expect = 3e-13
Identities = 156/208 (75%), Gaps = 21/208 (10%)
Strand=Plus/Plus
Query 665 TTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCCCTTCATGAATT 724
||| |||||||||||||||||||||||||||||||| | |||||||||| || | | ||
Sbjct 698 TTTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTA-GCGTT 756
Query 725 TGG-ATGAT----GTGTC-TCT-ATCT-GTGGTCAAAGAAGAGAAGCTTGC-GATGTTAT 775
|| || || |||| | | |||| ||| | | ||||||||||||||| | | ||||
Sbjct 757 AGGGATCATTCATGTGTGATTTTATCTTGTGTT-AGAGAAGAGAAGCTTGCAGTT-TTAT 814
Query 776 T--AA-AGCGG-TGGG--ATACATGTGAGGTGGAGATTTGGGTGACGGACAAGATTGAGC 829
| || | | || ||| || ||| || || || ||| | |||| ||| |||||
Sbjct 815 TTCAACACCAAATGTATTATAAATATGAAGTTGAAATATGGATTACGGTTAAGCTTGAGA 874
Query 830 CCGA--TG-TGTCGTGGAGCAAGTTCTT 854
|||| || |||||||||||||||||||
Sbjct 875 CCGAAATGGTGTCGTGGAGCAAGTTCTT 902
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 75.0 bits (40), Expect = 1e-12
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 665 TTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCC 713
||| |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 734 TTTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTGCC 782
> Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935
Length=903
Score = 69.4 bits (37), Expect = 5e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCT 708
|||||||||||||||||||||||||||||||| |||||||
Sbjct 618 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCT 657
> Ahg929120 jgi|Araly1|929120|scaffold_301577.1
Length=1237
Score = 67.6 bits (36), Expect = 2e-10
Identities = 156/210 (74%), Gaps = 24/210 (11%)
Strand=Plus/Plus
Query 670 TTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCCCTT-CA-TG--A-A-T 723
||||||||||||||||||||||||||||||| ||| ||| |||| || || | | | |
Sbjct 690 TTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAAT 749
Query 724 -TTGGA-TGAT-GTGTCTCTATCT-GTGGTCAAAGAAGAGAAGCTTGC-GATGTTAT-TA 777
|| || | | |||||||||||| ||| | | ||| ||| |||| || | |||||| |
Sbjct 750 GTTAGACTTTTTGTGTCTCTATCTTGTGTT-AGAGACGAGCAGCTCGCTG-TGTTATATC 807
Query 778 AAGCGGTGGGATACATGTGA-GGT---G--GAGATTTGGGTGACGGACAAGATTGAGCCC 831
|| || | ||| |||| ||| || | ||| |||| || || || |||||||| |||
Sbjct 808 AA-CGCTTGGACACATATGATGGGACAGTCGAGTTTTGTGTTACAGATAAGATTGATCCC 866
Query 832 GATG-TGT--CGTGGAGCAAGTTCTTAAAA 858
||| ||| | ||||||| ||| || |||
Sbjct 867 AATGCTGTGTCTTGGAGCATGTTTTTGAAA 896
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 67.6 bits (36), Expect = 2e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCC 713
|||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 1134 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTCTGCC 1178
> Ahg929853 jgi|Araly1|929853|scaffold_302310.1
Length=935
Score = 65.8 bits (35), Expect = 7e-10
Identities = 159/214 (74%), Gaps = 28/214 (13%)
Strand=Plus/Plus
Query 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCT-TTGCCCTT---C-ATGAA- 722
|||||||||||||||||||||||||||||||| ||| ||| || || || | ||||
Sbjct 539 TTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTT-CCATTTTACTATGATG 597
Query 723 TTTGG-ATGAT---GTG--TCTCTAT-CTGTGGTCAAAGAAGAG-AAGCTTGCGATGTTA 774
||| ||||| ||| ||||| | |||| | | ||||||| || |||||| |||||
Sbjct 598 TTTCACATGATTTTGTGGGTCTCTCTTCTGT--T-AGAGAAGAGCAA-CTTGCGGTGTTA 653
Query 775 TTA-AAGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGACA-AGATTGAGCCCG 832
|| || | |||||| |||| | ||||| ||| ||| ||| |||||||||||
Sbjct 654 TTTGAATATTTTA-ATACATCTGAGATAGAGATATGGACGACA-ACAGAGATTGAGCCCA 711
Query 833 ATGTG-T--CGTGGAG-CAAGTTCTTAAAAGTTG 862
||||| | |||||| | |||||||||||||
Sbjct 712 ATGTGGTGTCGTGGATACCC-TTCTTAAAAGTTG 744
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 65.8 bits (35), Expect = 7e-10
Identities = 43/47 (91%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 65 TGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAA 111
||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 785 TGAAAACAGTGCGATCTATTTGCAAAAAGTGGAATACTTTATCCAAA 831
> Ahg930371 jgi|Araly1|930371|scaffold_302828.1
Length=984
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 366 TAGGCTTGTGGTTTGGAACCCGTATTGT 393
||||||||||||||||||||||||||||
Sbjct 334 TAGGCTTGTGGTTTGGAACCCGTATTGT 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5