BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20710.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 1328 0.0
Ahg930018 jgi|Araly1|930018|scaffold_302475.1 440 9e-123
Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218 414 6e-115
Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216 270 1e-71
Ahg479595 jgi|Araly1|479595|fgenesh2_kg.3__2296__AT3G20700.1 224 1e-57
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 78.7 8e-14
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 73.1 4e-12
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 69.4 5e-11
Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 65.8 7e-10
Ahg929853 jgi|Araly1|929853|scaffold_302310.1 62.1 8e-09
Ahg929852 jgi|Araly1|929852|scaffold_302309.1 60.2 3e-08
Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964 60.2 3e-08
Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1 58.4 1e-07
> Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1
Length=1128
Score = 1328 bits (719), Expect = 0.0
Identities = 997/1121 (89%), Gaps = 59/1121 (5%)
Strand=Plus/Plus
Query 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60
Query 61 AAATACCTGAGAGCAAT-ACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATCG 119
||||||||||||||| | | |||||||||||||||||||| ||||| |||| |||| |||
Sbjct 61 AAATACCTGAGAGCAGTGA-GATCTACTTGCAAAAATTGGAACGATATATCCAAAACTCG 119
Query 120 GAGCTTTGCGAATAAGA-ACATCGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTGA 178
||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||
Sbjct 120 GAGCTTTGCGAATAA-ACACATCGACAAAGCAACCGTATCAGGGGAAAAAGAGTTTCTGA 178
Query 179 TGATCACACAATTTAATGTTTTTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 TGATCACAAAATTTAATGTTTTTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238
Query 239 GCT-TTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAAAGATGA 296
| ||||||||||||| ||||||| || |||| |||||||||||||||||| ||||||
Sbjct 239 A-TGTTGATCTATCTATAGAGCTTAAAGG-TAAACTTGTTAGCAGAGACAAAACAGATGA 296
Query 297 TTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTACGGGAAAA 356
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 TTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCACGGGAAAA 356
Query 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAACGGATCATGCCAAGACCTCC 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAATGGATCATGCCAAGACCTCC 416
Query 417 TTTCGGGTGCTTC-GACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACAAAA 475
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 417 TTTCGGGTGCT-CAGACAGGTATGCTCTCGGCTACGACAAATCCAGCGGTAGCCACAAAA 475
Query 476 TCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCAATATCTACGATTTGAGCTCTAGTT 535
||||||||||||||||||| |||||||| |||||| || | |||||||||||||||||||
Sbjct 476 TCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGTATACGATTTGAGCTCTAGTT 535
Query 536 CATGGATGATTCCTGATG--G-CACTCTTGAACGAGATATGGAGTATATGAAACAAGGCG 592
|||||||| ||||||||| | |||||||||| | ||||| | |||||| |||||||||
Sbjct 536 CATGGATGGTTCCTGATGATGTCACTCTTGAAAGGGATAT--A-TATATGCAACAAGGCG 592
Query 593 TGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAATCAATAGACTGGT-AC 651
|||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||| ||
Sbjct 593 TGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGAGGATTCAATAGA-TGGTTAC 651
Query 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACA------CCTCTGCCTCTGCCC 705
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGCCTCAGCCC 711
Query 706 TTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT--AAGTCTCTATCTGCTC-TTAAA 762
|| | |||||||||||| | ||| ||||||||||| || ||||||||| | ||| |
Sbjct 712 TT--G-AATGAAGGTTATGCCCTATACAAAGGTTATGCAA--CTCTATCTG-TAGTTACA 765
Query 763 GAAGAGAAGCTTGCGGTGTTACTA------TGGGATACAATGGTTATTTGGGTTACGAAC 816
|||||||||||||| |||||| || |||||||||| |||||||||||||||||||
Sbjct 766 GAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAACGGTTATTTGGGTTACGAAC 825
Query 817 AAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATG-----G-AA 870
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 826 AAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTAAAACTTGATATGATAATGGAA 885
Query 871 CCAA-GTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 929
|||| | ||| || | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 886 CCAAAG-ATTCAT---CACTATCAGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 941
Query 930 TGTGTTTGAGAAAGACA--G-CTCGTCA--T-GGTCA--T-GGATGTATAACCCCAATTA 980
||| ||||| ||||||| | | |||| | || | | |||||| ||| ||| |||
Sbjct 942 TGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCCGCCTTGGATGTTTAAAACCATTTA 1001
Query 981 CAACAAAGCTTACATAGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATCTTCTTAAATC 1040
||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1002 CAACAGAGCTTACATCGCTGGAGAGAATGGTTATTTCAGAAGTGTGGATCTTCTTAAATC 1061
Query 1041 TCCAAACACACTACAGCTTGGCCATCTTGTGTGCTCATATG 1081
||||||||||| ||| ||||||| ||||||||||| ||||
Sbjct 1062 TCCAAACACACGACAACTTGGCCGCCTTGTGTGCTCTTATG 1102
> Ahg930018 jgi|Araly1|930018|scaffold_302475.1
Length=1136
Score = 440 bits (238), Expect = 9e-123
Identities = 853/1132 (75%), Gaps = 114/1132 (10%)
Strand=Plus/Plus
Query 1 ATGATGATGTCAAATCTTCCAAAG-GATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTT 59
||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 22 ATGATGATGTCCAATCTTCC-ACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTT 80
Query 60 TAAATACCT-GAGAGCAATACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATC 118
| || | | || | || | ||||||||||||||||| ||| ||| |||| | ||| |||
Sbjct 81 GACAT-CTTTGAAATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTTTAACCAAATATC 139
Query 119 GGAGCTTTGCGAATAAGAACATC-GACAAAGCAGCG-GTATCAGGGGAAAAAGAGTTTCT 176
||| ||| | |||||| ||||| | ||| | ||| | ||||||||||| |||||||||
Sbjct 140 AGAGTTTTACAAATAAGCACATCCG-CAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCT 197
Query 177 GATGATCA-CACA-ATT-TA-ATGTTT-TTTGGGTCGGCGTCAATCTCCATAGAAGTCAG 231
||| || | || | | || | | || |||| | ||||||||||||||| ||| |||
Sbjct 198 GATCATGATCATGGAGTATAGA-GCTTATTTGATT-GGCGTCAATCTCCATGGAATTCAA 255
Query 232 AACAACAGCTTTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAA 290
||||||| | ||||||||||||| ||| || || |||| || | ||| |||| |
Sbjct 256 AACAACAACATTGATCTATCTATAAAGCAAAAAGG-TAAACTTATCAGCCTAGACTATTC 314
Query 291 AGATGATTTAT-TCCAAAA----AT-CTCAAGTCATTCACTGCAACGGTGTATTTTTATG 344
|||||| || || | | || |||| ||| |||||||| | ||| |||| ||||
Sbjct 315 AGATGAAGAATATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTATT 374
Query 345 CGTACGGGAAAAAATGCTT-GTGGTTTTGAACCCGTATTGGGGACAAAC-AAAACGGATC 402
|||| | | | |||| ||||||| |||||||||| |||| |||| |||| | |
Sbjct 375 CGTAAACGCCACGA-GCTTAGTGGTTTGGAACCCGTATCGGGGG-AAACCAAAAT--A-C 429
Query 403 ATGCCAAGAC-CTCCTTTCGGGTG-CTTCGACAGGTAT-GCTCTCGGATACGACAAATCC 459
|| | || || | | | | | || || | || | ||| |||||||||||||||||
Sbjct 430 AT-C-AA-ACGCGGGTAT-GTGCAACTAGGA-ATGT-TCGCTTTCGGATACGACAAATCC 483
Query 460 AGCGGTAGCCACAAAATCCTGAGGCTTTTCGGTG-TCAACCAAAATAACCTC-AATATCT 517
|||||||||||||||| |||||||||||||| | | || ||||||| || || ||||
Sbjct 484 TGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTA-CCTAAATAACATCGAA-ATCT 541
Query 518 ACGATTTGAGCTCTAGTTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGA- 575
| ||||||||||||| |||||||||| |||| || ||||| ||||||| | | |||| |
Sbjct 542 ATGATTTGAGCTCTAATTCATGGATGGTTCC-GAGTGGCAATCTTGAATGGGGTATG-AT 599
Query 576 GTATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGA 635
||||||| | | |||||||||||||| ||| |||||||||||| || ||| ||||||||
Sbjct 600 GTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGTAAGGATAAGGA 659
Query 636 ATCAATAGACTGGT-ACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTC 694
|||| |||| | | | ||| | ||||||||||||||||||||||| |||||| | | ||
Sbjct 660 ATCAGTAGATTA-TCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTTTGGACCGCGTC 718
Query 695 TGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTG 754
||| ||||||| | | | |||| || | | | || |||||||||||
Sbjct 719 TGCTTCTGCCC---A-TCA--AAGG--AT--T-TG-AT---GG------GTCTCTATCTG 757
Query 755 CTCTTAAAGAAGAGAAGCTTGCGGTGTTACT-ATG-GG-AT-ACA-AT--G-GTTA---- 802
| ||||||||||| |||| || |||||| | | | || || | | || | | ||
Sbjct 758 CAGTTAAAGAAGAGCAGCTAGCAGTGTTAATTAAGCGGTATGATATATCTGCGATAGAGA 817
Query 803 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTG 862
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 818 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTG 877
Query 863 ATATGGAACCAAGTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAA-AGAAA 921
||||| |||| | | | ||| | ||| | ||||||||| ||||||||||| | | |||
Sbjct 878 ATATG-AACCTA-TGTG-ATTAT-GCT--GCGAATTTCTTGATTGACGAGGAGATA-AAA 930
Query 922 GTCGCAGTTGTGTTTGAGAAAGACAGCTCGTCATGGTCATGGATGTA-TAACC-C-CA-- 976
|||||||| || ||||| | || ||| | ||||| ||| || ||| | | ||
Sbjct 931 GTCGCAGTGGTTTTTGATACAGTCAGG--G-CATGGG---GGA-GTCCTAAACTCACACT 983
Query 977 -A-TTACAAC-A-A-AGCTTACAT-AGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATC 1030
| ||||| | | | ||||||||| | |||||||||||||| ||| | ||| ||| |||
Sbjct 984 CACTTACACCGACATAGCTTACATCAT-TGGAGAGAATGGTTGTTTTAGAAGAGTGGATC 1042
Query 1031 TTCTTAAATCTCCAAACACACTACAGCTTGGCCATCTTG-TGTGCTCATATG 1081
| | |||||||| | || || | || || | ||| |||| | ||||| ||||
Sbjct 1043 TCCGTAAATCTCGATACCCA-T-CACCTCGTCCA-CTTGCT-TGCTCTTATG 1090
> Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218
Length=1101
Score = 414 bits (224), Expect = 6e-115
Identities = 839/1114 (75%), Gaps = 129/1114 (12%)
Strand=Plus/Plus
Query 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60
||||||||||| ||||||||| |||||||||| ||||||||||||| | | | | | |
Sbjct 1 ATGATGATGTCCAATCTTCCACAGGATTTGGTTGAGGAGATTCTCTAT-GAGAACAG-TG 58
Query 61 AAATACCTGA-GAGCAATA-CGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATC 118
|| || | |||| | ||||||| ||||||||| ||| ||| |||||| ||| |||
Sbjct 59 CGAT--CT-ATTTGCAAAAGCGATCTATTTGCAAAAACTGGAACGCTTTATCCAAAGATC 115
Query 119 GGAGCTTTGCGAATAAGAACAT-CGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTG 177
|| |||| | ||||| |||| || ||| | ||| | ||||||||||| ||||||||||
Sbjct 116 CGATCTTTACAAATAATTACATCCG-CAATGTAGCCGCATCAGGGGAAAGAGAGTTTCTG 174
Query 178 ATGATCACA-CAATTTAATGTTT-TTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACA 235
||||||| | |||||| ||||| ||| ||||||||||||||||||| | | ||| ||||
Sbjct 175 ATGATCA-AGGAATTTAGTGTTTATTT-GGTCGGCGTCAATCTCCATGGTATTCAAAACA 232
Query 236 ACAGCT-TTGATCTATCTATTCAGC-TTAAGGCTAAAATTGTTAGCA-GAGACAAAAAAG 292
||| | ||| ||||||||| ||| | |||| || | || |||||| | ||||| | ||
Sbjct 233 ACA-ATGTTGGTCTATCTATAAAGCGTAAAGG-TAGACTTATTAGCATG-GACAATACAG 289
Query 293 AT--GATTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCG-TAC 349
| || |||| | ||| |||||| |||||||||| ||| |||| |||||| | |
Sbjct 290 TTCGGA--GATTCTGTATATCCCAAGTCTTTCACTGCAATGGTTTATTGCTATGCGTTTC 347
Query 350 -GGG------A---A-AA-AAT--GCTTGTGGTTTTGAACCCGTATTGGGGACAAA-CAA 394
||| | | || ||| ||||| ||||| ||| ||||| || | |||| |||
Sbjct 348 GGGGAAAAACATGGATAATAATAGGCTTGCGGTTTGGAATCCGTACTGTTG-CAAACCAA 406
Query 395 AACGGATC-ATGCCA--AGACCT-CCT-TT-CGGGTGCTTC-GACAGGTATGCTCTCGGA 447
|| ||||| | ||| ||| | | | || ||| | | || |||| ||||||||||
Sbjct 407 AATGGATCAAACCCACCAGATATACTTATTATGGG-ACAGCAGAGAGGTTTGCTCTCGGA 465
Query 448 TACGACAAATCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTG-TCAACCAAAATA 505
|| ||||||| || | ||||||||||||||| |||||||||| |||| | |||| |||||
Sbjct 466 TATGACAAAT-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGAT-AACCTAAATA 523
Query 506 ACCTC-AATATCTACGATTTGAGCTCTAGTTCATGGATGATTCCTGATGGCACTCTTGAA 564
|| || || ||||||||||||||||| | |||||||| | ||||| ||| ||||||||||
Sbjct 524 ACATCGAA-ATCTACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAA 582
Query 565 CGAGATATGGAGTATATGAAACAAGGCGTGTCTTTGAATGG-AGATACTTACTGGTATGC 623
|| ||||| | ||||||| ||||||| ||||||||||| || | | ||||| ||||||||
Sbjct 583 CGGGATATAGTGTATATGCAACAAGGTGTGTCTTTGAA-GGAAAAGACTTATTGGTATGC 641
Query 624 TAAAGATAAGGAATCA-ATAGACT-GGTACTTATTATGTTTTGATTTTACAAGAGAGAGA 681
|| ||||||||||||| | ||| | |||||||| | ||||||||||||||||||||||
Sbjct 642 TAGAGATAAGGAATCAGA-AGA-TAAATACTTATTTTCTTTTGATTTTACAAGAGAGAGA 699
Query 682 TTTGGAACACCTCTGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT 741
|||||| | | ||||||| ||||||| | | | | || | | | | | | |
Sbjct 700 TTTGGACCGCGTCTGCCTTTGCCCTTCA-T---G----T-AT--T-T-CG-AT-GATG-T 743
Query 742 AAGTCTCTATCTGCTCTTAAAGAAGAGAAGCTTGCGGTGTTACTA------TGGGATACA 795
| |||||||||| | ||||||||||| |||||||||||||| || |||||||||
Sbjct 744 A--TCTCTATCTGTTGTTAAAGAAGAGCAGCTTGCGGTGTTAGTAAAGAGGTGGGATACA 801
Query 796 A-TG-GTT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATC 849
|| | | | ||||||| ||| ||||||||||||| |||| ||||||||||||
Sbjct 802 TGTGAGATGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAGG 858
Query 850 TTCTTAAAACTTGATATGGAACCAAGTATTT-ATTGTCGCTATGGGAATTTCTTC---AT 905
||||||||| ||||||| ||||| || ||| ||| | || | |||||| | ||
Sbjct 859 TTCTTAAAAGTTGATATTAAACCACGT-TTTGATTTT-GC-A----AATTTCGCCGTGAT 911
Query 906 TGACGAGGAAAAGAAAGTCGCAGTTG-TGTTTGAGAAAGACAGCTCGTCATGGTCATG-G 963
||| | ||| |||||||||||| ||| | ||||| ||| | | | | | || || | |
Sbjct 912 TGATGTGGAGAAGAAAGTCGCA-TTGGTTTTTGATAAA-A-A--T-G--A-GG-CA-GAG 960
Query 964 ATGTAT--AACCCCAATTACAACAAAGCTTACAT-AGCTGGAGAGAATGGTTATTTCAAA 1020
| || | || || | ||||| || ||||||||| | | |||||||| |||| |||||||
Sbjct 961 AAGT-TGCAATCC-AGTTACAGCATAGCTTACATCATC-GGAGAGAAAGGTTGTTTCAAA 1017
Query 1021 -A-GTGTGAATCTTCT-TAAATCTCCAAACACAC 1051
| ||| || ||| | | |||||||| ||||||
Sbjct 1018 GAAGTG-GA-TCT-CGGTGAATCTCCATACACAC 1048
> Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216
Length=1044
Score = 270 bits (146), Expect = 1e-71
Identities = 467/612 (76%), Gaps = 62/612 (10%)
Strand=Plus/Plus
Query 361 CTTGTGG--TT-TTGAACCCGTATTGGGGACAAACA-AAACGGATC--ATGC-CAAGACC 413
||||||| || || |||||||||||||| ||||| ||| || || | || ||| |
Sbjct 301 CTTGTGGTTTTATTTAACCCGTATTGGGG-GAAACATAAATGGTTCAAACGCACAA-A-- 356
Query 414 TCCTT-TCGGGTGCTTCGACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACA 472
| || | ||| | ||||||| | |||| ||||||||||||||||| ||||||||||||
Sbjct 357 TAATTAT-GGGAGATTCGACAAATTTGCTTTCGGATACGACAAATCCTGCGGTAGCCACA 415
Query 473 AAATCCTGAGGCTTTTCGGTG-TCAACCAAAATAACCTCA-ATATCTACGATTTGAGCTC 530
|||| ||||||||||||||| | ||| ||||||| | | | |||||| ||||||||||
Sbjct 416 AAATATTGAGGCTTTTCGGTGAT-TACCTAAATAACAT-AGAAATCTACAATTTGAGCTC 473
Query 531 T-A----G-TTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGAGTATATGA 583
| | | |||||||||| ||||| | || |||||||||| | ||||| | | |||||
Sbjct 474 TGATTCTGATTCATGGATGGTTCCT-AGTGTCACTCTTGAATGGGATATAGTGGATATGC 532
Query 584 AACAAGGCGTGTCTTTGAATGG-AGATACTTACTGGTATGCTAAAGATAAGGAATCA-AT 641
| | | |||||||||||| || | |||| |||||||||||||||||||| |||||| |
Sbjct 533 ATGATGACGTGTCTTTGAAGGGCA-ATACATACTGGTATGCTAAAGATAAAGAATCAGA- 590
Query 642 AGACTGGTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCT 701
||| | || |||||||||||||||||||||||||||||||| ||| | | | |||||||
Sbjct 591 AGATTATTATTTATTATGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTTTGCCTCT 650
Query 702 GCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTGCTC-TTA 760
|| | || | | || | | | |||||| | ||||||||||| | ||
Sbjct 651 TCC-TC-AGCCCT-----TCAT-C---A-ATGAAGGTTGTGGGTCTCTATCTG-TGGTTG 697
Query 761 AAGAAGAGAAGCTTGCGGTGTTACTA-----T-GGGAT--A-CA-A--TGGTTATTTGGG 808
||||||||||||||| |||||| || | ||| | | || | ||| |||||||
Sbjct 698 GAGAAGAGAAGCTTGCAGTGTTATTACAGCATTGGGGTGCATCAGAAATGGAGATTTGGG 757
Query 809 TTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATG- 867
|||||||||||||||||||||||| ||||||||||||| ||||| ||| || ||| |
Sbjct 758 TTACGAACAAGATTGAGCCTGATGAAGTGTCGTGGAGCAAGTTCTTGAAAGTTTATAAGA 817
Query 868 GAACCA-AGTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGC 926
| ||| | | ||| || || | || ||||||||| ||||| || || |||||||||||
Sbjct 818 GG-CCACATTGTTT-TTA-CG-T-TGCGAATTTCTTGATTGAGGAAGAGAAGAAAGTCGC 872
Query 927 AGTTGTGTTTGA 938
||| || |||||
Sbjct 873 AGTGGTTTTTGA 884
> Ahg479595 jgi|Araly1|479595|fgenesh2_kg.3__2296__AT3G20700.1
Length=844
Score = 224 bits (121), Expect = 1e-57
Identities = 500/670 (75%), Gaps = 78/670 (12%)
Strand=Plus/Plus
Query 242 TTGATCTATCTATTCAGCT-T-AAGGCTAAAATTGTTAGCAGAGACAAAAAAGATGATTT 299
|||||||||||||| || | | |||| |||| || ||||||||||||||| || |||
Sbjct 131 TTGATCTATCTATTAAG-TGTAAAGG-TAAACTTATTAGCAGAGACAAAACAGGTGAGGA 188
Query 300 ATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTA-C-GG--GAA- 354
||| | |||| |||| |||||||||| ||| |||| ||||||||| | || ||
Sbjct 189 ATTATATGTGTCTCGAGTCTTTCACTGCAATGGTTTATTGTTATGCGTATCAGGAAAAAC 248
Query 355 -A---A--A-A-T--GCTTGTGGTTTTG-AACCCGTA-TTGGGGACAAACAAAACGGATC 402
| | | | | |||||||| |||| || ||||| ||||||| || ||||| || ||
Sbjct 249 TAGTCATGATACTAGGCTTGTGG-TTTGTAATCCGTATTTGGGGA-AACCAAAATGGGTC 306
Query 403 -ATGCCAAGACCTCCTT-TCGGG-TGCTTCGACAGGTATGCTCTCGGATACGACAAATCC 459
| |||| | | || | ||| | | | |||| | |||||||||||| |||||||
Sbjct 307 AAACCCAA-AAATAATTAT-GGGATAC-TAGACAAATTTGCTCTCGGATATGACAAAT-T 362
Query 460 A-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCA-ATATCT 517
| |||||||| |||||||| ||||| ||| || | | | | ||||| || | | ||||
Sbjct 363 ATGCGGTAGCTACAAAATCTTGAGGATTTACGAT-T--TCGATAATAAACT-AGAAATCT 418
Query 518 ACGATTTGAGCTCTAGTTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGAG 576
|||| |||||||||| |||||||||||||||| | || |||| ||| ||| |||| |||
Sbjct 419 ACGAATTGAGCTCTAATTCATGGATGATTCCT-AGTGACACTTTTGGACGGGATAAAGAG 477
Query 577 TATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAA 636
| |||| |||| |||||||||| || ||| ||||||| |||| ||||| |||||| |||
Sbjct 478 TGTATGCAACATGGCGTGTCTTCCAAGGGAAATACTTATTGGTGTGCTAGAGATAAAGAA 537
Query 637 TCA-ATAGACTGGTACT-TATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACAC-CT 693
||| | | | | ||| | | || |||||||||||||||||||||||||| ||| | | |
Sbjct 538 TCACA-ATA-TTGTAATCTGTTCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGC- 594
Query 694 CTGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCT 753
||||| |||||| || ||| || | ||| | | | | ||||||||||
Sbjct 595 CTGCCACTGCCC-TT--CAAT---GG--A-ACT-T------A---TGT--GTCTCTATCT 633
Query 754 GCTCTTAAAGAAGAGAAGCTTGCGGTGTTACT--A----TGGGAT--A-C--A-ATGGTT 801
| ||||||||||| ||||| |||||||| | | | |||| | | | || |
Sbjct 634 ACGGTTAAAGAAGAGCAGCTTACGGTGTTATTACAGCCGTCGGATAAATCTGAGATAGAG 693
Query 802 ATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTT 861
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 694 ATTTGGGTTACGAACAAGATTGAGCCTGATGAAGTGTCGTGGAGCATCTTCTTGAAAGTT 753
Query 862 GATATGGAAC 871
|| ||| |||
Sbjct 754 GAAATG-AAC 762
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 78.7 bits (42), Expect = 8e-14
Identities = 53/58 (91%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 654 ATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAGT 711
||| |||||||||||||||||||||||||||||| | | |||||||||||| ||||||
Sbjct 733 ATT-TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTGCCATTTAGT 789
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 73.1 bits (39), Expect = 4e-12
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAGT 711
|||||||||||||||||||||||||||||| | | | |||||||||| ||||||
Sbjct 1132 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTCTGCCATTTAGT 1185
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 69.4 bits (37), Expect = 5e-11
Identities = 52/59 (88%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAG 710
||||| |||||||||||||||||||||||||||||| | | | ||||| |||| |||||
Sbjct 695 TTATT-TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTAG 752
Score = 58.4 bits (31), Expect = 1e-07
Identities = 38/41 (93%), Gaps = 2/41 (5%)
Strand=Plus/Plus
Query 897 TTTCTTCATTGACGAGGAAAAGAAAGTCGC-AGTTGTGTTT 936
|||||||||||||||||||||||||||||| | ||| ||||
Sbjct 936 TTTCTTCATTGACGAGGAAAAGAAAGTCGCCA-TTGGGTTT 975
> Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935
Length=903
Score = 65.8 bits (35), Expect = 7e-10
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCT 701
|||||||||||||||||||||||||||||| | | |||||||||
Sbjct 616 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCT 659
> Ahg929853 jgi|Araly1|929853|scaffold_302310.1
Length=935
Score = 62.1 bits (33), Expect = 8e-09
Identities = 45/51 (88%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTT 708
|||||||||||||||||||||||||||||| | | ||| ||||| || |||
Sbjct 537 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTTCCATTT 587
> Ahg929852 jgi|Araly1|929852|scaffold_302309.1
Length=1123
Score = 60.2 bits (32), Expect = 3e-08
Identities = 45/51 (88%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 659 GTTTTGATTTTACAAGAGAGAGATTTGGAACACCTC-TGCCTCTGCCCTTT 708
||||||||||||||||||||||||||||| | | || | |||||||| |||
Sbjct 676 GTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCTGCCATTT 725
> Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964
Length=1383
Score = 60.2 bits (32), Expect = 3e-08
Identities = 42/47 (89%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCC 704
||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 679 TGTTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTCTACCTCTGCC 725
> Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1
Length=973
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 656 TATGTTTTGATTTTACAAGAGAGAGATTTGG 686
|||||||||||||||||||||||||||||||
Sbjct 526 TATGTTTTGATTTTACAAGAGAGAGATTTGG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5