BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20710.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 1328 0.0 Ahg930018 jgi|Araly1|930018|scaffold_302475.1 440 9e-123 Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218 414 6e-115 Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216 270 1e-71 Ahg479595 jgi|Araly1|479595|fgenesh2_kg.3__2296__AT3G20700.1 224 1e-57 Ahg925743 jgi|Araly1|925743|scaffold_201304.1 78.7 8e-14 Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 73.1 4e-12 Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 69.4 5e-11 Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 65.8 7e-10 Ahg929853 jgi|Araly1|929853|scaffold_302310.1 62.1 8e-09 Ahg929852 jgi|Araly1|929852|scaffold_302309.1 60.2 3e-08 Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964 60.2 3e-08 Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1 58.4 1e-07 > Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 Length=1128 Score = 1328 bits (719), Expect = 0.0 Identities = 997/1121 (89%), Gaps = 59/1121 (5%) Strand=Plus/Plus Query 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60 Query 61 AAATACCTGAGAGCAAT-ACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATCG 119 ||||||||||||||| | | |||||||||||||||||||| ||||| |||| |||| ||| Sbjct 61 AAATACCTGAGAGCAGTGA-GATCTACTTGCAAAAATTGGAACGATATATCCAAAACTCG 119 Query 120 GAGCTTTGCGAATAAGA-ACATCGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTGA 178 ||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| Sbjct 120 GAGCTTTGCGAATAA-ACACATCGACAAAGCAACCGTATCAGGGGAAAAAGAGTTTCTGA 178 Query 179 TGATCACACAATTTAATGTTTTTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 179 TGATCACAAAATTTAATGTTTTTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238 Query 239 GCT-TTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAAAGATGA 296 | ||||||||||||| ||||||| || |||| |||||||||||||||||| |||||| Sbjct 239 A-TGTTGATCTATCTATAGAGCTTAAAGG-TAAACTTGTTAGCAGAGACAAAACAGATGA 296 Query 297 TTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTACGGGAAAA 356 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 297 TTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCACGGGAAAA 356 Query 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAACGGATCATGCCAAGACCTCC 416 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAATGGATCATGCCAAGACCTCC 416 Query 417 TTTCGGGTGCTTC-GACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACAAAA 475 ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 417 TTTCGGGTGCT-CAGACAGGTATGCTCTCGGCTACGACAAATCCAGCGGTAGCCACAAAA 475 Query 476 TCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCAATATCTACGATTTGAGCTCTAGTT 535 ||||||||||||||||||| |||||||| |||||| || | ||||||||||||||||||| Sbjct 476 TCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGTATACGATTTGAGCTCTAGTT 535 Query 536 CATGGATGATTCCTGATG--G-CACTCTTGAACGAGATATGGAGTATATGAAACAAGGCG 592 |||||||| ||||||||| | |||||||||| | ||||| | |||||| ||||||||| Sbjct 536 CATGGATGGTTCCTGATGATGTCACTCTTGAAAGGGATAT--A-TATATGCAACAAGGCG 592 Query 593 TGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAATCAATAGACTGGT-AC 651 |||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||| || Sbjct 593 TGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGAGGATTCAATAGA-TGGTTAC 651 Query 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACA------CCTCTGCCTCTGCCC 705 |||||||||||||||||||||||||||||||||||| | |||||||||| |||| Sbjct 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGCCTCAGCCC 711 Query 706 TTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT--AAGTCTCTATCTGCTC-TTAAA 762 || | |||||||||||| | ||| ||||||||||| || ||||||||| | ||| | Sbjct 712 TT--G-AATGAAGGTTATGCCCTATACAAAGGTTATGCAA--CTCTATCTG-TAGTTACA 765 Query 763 GAAGAGAAGCTTGCGGTGTTACTA------TGGGATACAATGGTTATTTGGGTTACGAAC 816 |||||||||||||| |||||| || |||||||||| ||||||||||||||||||| Sbjct 766 GAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAACGGTTATTTGGGTTACGAAC 825 Query 817 AAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATG-----G-AA 870 ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || Sbjct 826 AAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTAAAACTTGATATGATAATGGAA 885 Query 871 CCAA-GTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 929 |||| | ||| || | |||| |||||||||||||||||||||||||||||||||||| Sbjct 886 CCAAAG-ATTCAT---CACTATCAGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 941 Query 930 TGTGTTTGAGAAAGACA--G-CTCGTCA--T-GGTCA--T-GGATGTATAACCCCAATTA 980 ||| ||||| ||||||| | | |||| | || | | |||||| ||| ||| ||| Sbjct 942 TGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCCGCCTTGGATGTTTAAAACCATTTA 1001 Query 981 CAACAAAGCTTACATAGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATCTTCTTAAATC 1040 ||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1002 CAACAGAGCTTACATCGCTGGAGAGAATGGTTATTTCAGAAGTGTGGATCTTCTTAAATC 1061 Query 1041 TCCAAACACACTACAGCTTGGCCATCTTGTGTGCTCATATG 1081 ||||||||||| ||| ||||||| ||||||||||| |||| Sbjct 1062 TCCAAACACACGACAACTTGGCCGCCTTGTGTGCTCTTATG 1102 > Ahg930018 jgi|Araly1|930018|scaffold_302475.1 Length=1136 Score = 440 bits (238), Expect = 9e-123 Identities = 853/1132 (75%), Gaps = 114/1132 (10%) Strand=Plus/Plus Query 1 ATGATGATGTCAAATCTTCCAAAG-GATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTT 59 ||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 22 ATGATGATGTCCAATCTTCC-ACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTT 80 Query 60 TAAATACCT-GAGAGCAATACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATC 118 | || | | || | || | ||||||||||||||||| ||| ||| |||| | ||| ||| Sbjct 81 GACAT-CTTTGAAATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTTTAACCAAATATC 139 Query 119 GGAGCTTTGCGAATAAGAACATC-GACAAAGCAGCG-GTATCAGGGGAAAAAGAGTTTCT 176 ||| ||| | |||||| ||||| | ||| | ||| | ||||||||||| ||||||||| Sbjct 140 AGAGTTTTACAAATAAGCACATCCG-CAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCT 197 Query 177 GATGATCA-CACA-ATT-TA-ATGTTT-TTTGGGTCGGCGTCAATCTCCATAGAAGTCAG 231 ||| || | || | | || | | || |||| | ||||||||||||||| ||| ||| Sbjct 198 GATCATGATCATGGAGTATAGA-GCTTATTTGATT-GGCGTCAATCTCCATGGAATTCAA 255 Query 232 AACAACAGCTTTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAA 290 ||||||| | ||||||||||||| ||| || || |||| || | ||| |||| | Sbjct 256 AACAACAACATTGATCTATCTATAAAGCAAAAAGG-TAAACTTATCAGCCTAGACTATTC 314 Query 291 AGATGATTTAT-TCCAAAA----AT-CTCAAGTCATTCACTGCAACGGTGTATTTTTATG 344 |||||| || || | | || |||| ||| |||||||| | ||| |||| |||| Sbjct 315 AGATGAAGAATATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTATT 374 Query 345 CGTACGGGAAAAAATGCTT-GTGGTTTTGAACCCGTATTGGGGACAAAC-AAAACGGATC 402 |||| | | | |||| ||||||| |||||||||| |||| |||| |||| | | Sbjct 375 CGTAAACGCCACGA-GCTTAGTGGTTTGGAACCCGTATCGGGGG-AAACCAAAAT--A-C 429 Query 403 ATGCCAAGAC-CTCCTTTCGGGTG-CTTCGACAGGTAT-GCTCTCGGATACGACAAATCC 459 || | || || | | | | | || || | || | ||| ||||||||||||||||| Sbjct 430 AT-C-AA-ACGCGGGTAT-GTGCAACTAGGA-ATGT-TCGCTTTCGGATACGACAAATCC 483 Query 460 AGCGGTAGCCACAAAATCCTGAGGCTTTTCGGTG-TCAACCAAAATAACCTC-AATATCT 517 |||||||||||||||| |||||||||||||| | | || ||||||| || || |||| Sbjct 484 TGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTA-CCTAAATAACATCGAA-ATCT 541 Query 518 ACGATTTGAGCTCTAGTTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGA- 575 | ||||||||||||| |||||||||| |||| || ||||| ||||||| | | |||| | Sbjct 542 ATGATTTGAGCTCTAATTCATGGATGGTTCC-GAGTGGCAATCTTGAATGGGGTATG-AT 599 Query 576 GTATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGA 635 ||||||| | | |||||||||||||| ||| |||||||||||| || ||| |||||||| Sbjct 600 GTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGTAAGGATAAGGA 659 Query 636 ATCAATAGACTGGT-ACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTC 694 |||| |||| | | | ||| | ||||||||||||||||||||||| |||||| | | || Sbjct 660 ATCAGTAGATTA-TCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTTTGGACCGCGTC 718 Query 695 TGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTG 754 ||| ||||||| | | | |||| || | | | || ||||||||||| Sbjct 719 TGCTTCTGCCC---A-TCA--AAGG--AT--T-TG-AT---GG------GTCTCTATCTG 757 Query 755 CTCTTAAAGAAGAGAAGCTTGCGGTGTTACT-ATG-GG-AT-ACA-AT--G-GTTA---- 802 | ||||||||||| |||| || |||||| | | | || || | | || | | || Sbjct 758 CAGTTAAAGAAGAGCAGCTAGCAGTGTTAATTAAGCGGTATGATATATCTGCGATAGAGA 817 Query 803 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTG 862 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 818 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTG 877 Query 863 ATATGGAACCAAGTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAA-AGAAA 921 ||||| |||| | | | ||| | ||| | ||||||||| ||||||||||| | | ||| Sbjct 878 ATATG-AACCTA-TGTG-ATTAT-GCT--GCGAATTTCTTGATTGACGAGGAGATA-AAA 930 Query 922 GTCGCAGTTGTGTTTGAGAAAGACAGCTCGTCATGGTCATGGATGTA-TAACC-C-CA-- 976 |||||||| || ||||| | || ||| | ||||| ||| || ||| | | || Sbjct 931 GTCGCAGTGGTTTTTGATACAGTCAGG--G-CATGGG---GGA-GTCCTAAACTCACACT 983 Query 977 -A-TTACAAC-A-A-AGCTTACAT-AGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATC 1030 | ||||| | | | ||||||||| | |||||||||||||| ||| | ||| ||| ||| Sbjct 984 CACTTACACCGACATAGCTTACATCAT-TGGAGAGAATGGTTGTTTTAGAAGAGTGGATC 1042 Query 1031 TTCTTAAATCTCCAAACACACTACAGCTTGGCCATCTTG-TGTGCTCATATG 1081 | | |||||||| | || || | || || | ||| |||| | ||||| |||| Sbjct 1043 TCCGTAAATCTCGATACCCA-T-CACCTCGTCCA-CTTGCT-TGCTCTTATG 1090 > Ahg905090 jgi|Araly1|905090|Al_scaffold_0003_2218 Length=1101 Score = 414 bits (224), Expect = 6e-115 Identities = 839/1114 (75%), Gaps = 129/1114 (12%) Strand=Plus/Plus Query 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60 ||||||||||| ||||||||| |||||||||| ||||||||||||| | | | | | | Sbjct 1 ATGATGATGTCCAATCTTCCACAGGATTTGGTTGAGGAGATTCTCTAT-GAGAACAG-TG 58 Query 61 AAATACCTGA-GAGCAATA-CGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATC 118 || || | |||| | ||||||| ||||||||| ||| ||| |||||| ||| ||| Sbjct 59 CGAT--CT-ATTTGCAAAAGCGATCTATTTGCAAAAACTGGAACGCTTTATCCAAAGATC 115 Query 119 GGAGCTTTGCGAATAAGAACAT-CGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTG 177 || |||| | ||||| |||| || ||| | ||| | ||||||||||| |||||||||| Sbjct 116 CGATCTTTACAAATAATTACATCCG-CAATGTAGCCGCATCAGGGGAAAGAGAGTTTCTG 174 Query 178 ATGATCACA-CAATTTAATGTTT-TTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACA 235 ||||||| | |||||| ||||| ||| ||||||||||||||||||| | | ||| |||| Sbjct 175 ATGATCA-AGGAATTTAGTGTTTATTT-GGTCGGCGTCAATCTCCATGGTATTCAAAACA 232 Query 236 ACAGCT-TTGATCTATCTATTCAGC-TTAAGGCTAAAATTGTTAGCA-GAGACAAAAAAG 292 ||| | ||| ||||||||| ||| | |||| || | || |||||| | ||||| | || Sbjct 233 ACA-ATGTTGGTCTATCTATAAAGCGTAAAGG-TAGACTTATTAGCATG-GACAATACAG 289 Query 293 AT--GATTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCG-TAC 349 | || |||| | ||| |||||| |||||||||| ||| |||| |||||| | | Sbjct 290 TTCGGA--GATTCTGTATATCCCAAGTCTTTCACTGCAATGGTTTATTGCTATGCGTTTC 347 Query 350 -GGG------A---A-AA-AAT--GCTTGTGGTTTTGAACCCGTATTGGGGACAAA-CAA 394 ||| | | || ||| ||||| ||||| ||| ||||| || | |||| ||| Sbjct 348 GGGGAAAAACATGGATAATAATAGGCTTGCGGTTTGGAATCCGTACTGTTG-CAAACCAA 406 Query 395 AACGGATC-ATGCCA--AGACCT-CCT-TT-CGGGTGCTTC-GACAGGTATGCTCTCGGA 447 || ||||| | ||| ||| | | | || ||| | | || |||| |||||||||| Sbjct 407 AATGGATCAAACCCACCAGATATACTTATTATGGG-ACAGCAGAGAGGTTTGCTCTCGGA 465 Query 448 TACGACAAATCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTG-TCAACCAAAATA 505 || ||||||| || | ||||||||||||||| |||||||||| |||| | |||| ||||| Sbjct 466 TATGACAAAT-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGAT-AACCTAAATA 523 Query 506 ACCTC-AATATCTACGATTTGAGCTCTAGTTCATGGATGATTCCTGATGGCACTCTTGAA 564 || || || ||||||||||||||||| | |||||||| | ||||| ||| |||||||||| Sbjct 524 ACATCGAA-ATCTACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAA 582 Query 565 CGAGATATGGAGTATATGAAACAAGGCGTGTCTTTGAATGG-AGATACTTACTGGTATGC 623 || ||||| | ||||||| ||||||| ||||||||||| || | | ||||| |||||||| Sbjct 583 CGGGATATAGTGTATATGCAACAAGGTGTGTCTTTGAA-GGAAAAGACTTATTGGTATGC 641 Query 624 TAAAGATAAGGAATCA-ATAGACT-GGTACTTATTATGTTTTGATTTTACAAGAGAGAGA 681 || ||||||||||||| | ||| | |||||||| | |||||||||||||||||||||| Sbjct 642 TAGAGATAAGGAATCAGA-AGA-TAAATACTTATTTTCTTTTGATTTTACAAGAGAGAGA 699 Query 682 TTTGGAACACCTCTGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT 741 |||||| | | ||||||| ||||||| | | | | || | | | | | | | Sbjct 700 TTTGGACCGCGTCTGCCTTTGCCCTTCA-T---G----T-AT--T-T-CG-AT-GATG-T 743 Query 742 AAGTCTCTATCTGCTCTTAAAGAAGAGAAGCTTGCGGTGTTACTA------TGGGATACA 795 | |||||||||| | ||||||||||| |||||||||||||| || ||||||||| Sbjct 744 A--TCTCTATCTGTTGTTAAAGAAGAGCAGCTTGCGGTGTTAGTAAAGAGGTGGGATACA 801 Query 796 A-TG-GTT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATC 849 || | | | ||||||| ||| ||||||||||||| |||| |||||||||||| Sbjct 802 TGTGAGATGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAGG 858 Query 850 TTCTTAAAACTTGATATGGAACCAAGTATTT-ATTGTCGCTATGGGAATTTCTTC---AT 905 ||||||||| ||||||| ||||| || ||| ||| | || | |||||| | || Sbjct 859 TTCTTAAAAGTTGATATTAAACCACGT-TTTGATTTT-GC-A----AATTTCGCCGTGAT 911 Query 906 TGACGAGGAAAAGAAAGTCGCAGTTG-TGTTTGAGAAAGACAGCTCGTCATGGTCATG-G 963 ||| | ||| |||||||||||| ||| | ||||| ||| | | | | | || || | | Sbjct 912 TGATGTGGAGAAGAAAGTCGCA-TTGGTTTTTGATAAA-A-A--T-G--A-GG-CA-GAG 960 Query 964 ATGTAT--AACCCCAATTACAACAAAGCTTACAT-AGCTGGAGAGAATGGTTATTTCAAA 1020 | || | || || | ||||| || ||||||||| | | |||||||| |||| ||||||| Sbjct 961 AAGT-TGCAATCC-AGTTACAGCATAGCTTACATCATC-GGAGAGAAAGGTTGTTTCAAA 1017 Query 1021 -A-GTGTGAATCTTCT-TAAATCTCCAAACACAC 1051 | ||| || ||| | | |||||||| |||||| Sbjct 1018 GAAGTG-GA-TCT-CGGTGAATCTCCATACACAC 1048 > Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216 Length=1044 Score = 270 bits (146), Expect = 1e-71 Identities = 467/612 (76%), Gaps = 62/612 (10%) Strand=Plus/Plus Query 361 CTTGTGG--TT-TTGAACCCGTATTGGGGACAAACA-AAACGGATC--ATGC-CAAGACC 413 ||||||| || || |||||||||||||| ||||| ||| || || | || ||| | Sbjct 301 CTTGTGGTTTTATTTAACCCGTATTGGGG-GAAACATAAATGGTTCAAACGCACAA-A-- 356 Query 414 TCCTT-TCGGGTGCTTCGACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACA 472 | || | ||| | ||||||| | |||| ||||||||||||||||| |||||||||||| Sbjct 357 TAATTAT-GGGAGATTCGACAAATTTGCTTTCGGATACGACAAATCCTGCGGTAGCCACA 415 Query 473 AAATCCTGAGGCTTTTCGGTG-TCAACCAAAATAACCTCA-ATATCTACGATTTGAGCTC 530 |||| ||||||||||||||| | ||| ||||||| | | | |||||| |||||||||| Sbjct 416 AAATATTGAGGCTTTTCGGTGAT-TACCTAAATAACAT-AGAAATCTACAATTTGAGCTC 473 Query 531 T-A----G-TTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGAGTATATGA 583 | | | |||||||||| ||||| | || |||||||||| | ||||| | | ||||| Sbjct 474 TGATTCTGATTCATGGATGGTTCCT-AGTGTCACTCTTGAATGGGATATAGTGGATATGC 532 Query 584 AACAAGGCGTGTCTTTGAATGG-AGATACTTACTGGTATGCTAAAGATAAGGAATCA-AT 641 | | | |||||||||||| || | |||| |||||||||||||||||||| |||||| | Sbjct 533 ATGATGACGTGTCTTTGAAGGGCA-ATACATACTGGTATGCTAAAGATAAAGAATCAGA- 590 Query 642 AGACTGGTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCT 701 ||| | || |||||||||||||||||||||||||||||||| ||| | | | ||||||| Sbjct 591 AGATTATTATTTATTATGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTTTGCCTCT 650 Query 702 GCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTGCTC-TTA 760 || | || | | || | | | |||||| | ||||||||||| | || Sbjct 651 TCC-TC-AGCCCT-----TCAT-C---A-ATGAAGGTTGTGGGTCTCTATCTG-TGGTTG 697 Query 761 AAGAAGAGAAGCTTGCGGTGTTACTA-----T-GGGAT--A-CA-A--TGGTTATTTGGG 808 ||||||||||||||| |||||| || | ||| | | || | ||| ||||||| Sbjct 698 GAGAAGAGAAGCTTGCAGTGTTATTACAGCATTGGGGTGCATCAGAAATGGAGATTTGGG 757 Query 809 TTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATG- 867 |||||||||||||||||||||||| ||||||||||||| ||||| ||| || ||| | Sbjct 758 TTACGAACAAGATTGAGCCTGATGAAGTGTCGTGGAGCAAGTTCTTGAAAGTTTATAAGA 817 Query 868 GAACCA-AGTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGC 926 | ||| | | ||| || || | || ||||||||| ||||| || || ||||||||||| Sbjct 818 GG-CCACATTGTTT-TTA-CG-T-TGCGAATTTCTTGATTGAGGAAGAGAAGAAAGTCGC 872 Query 927 AGTTGTGTTTGA 938 ||| || ||||| Sbjct 873 AGTGGTTTTTGA 884 > Ahg479595 jgi|Araly1|479595|fgenesh2_kg.3__2296__AT3G20700.1 Length=844 Score = 224 bits (121), Expect = 1e-57 Identities = 500/670 (75%), Gaps = 78/670 (12%) Strand=Plus/Plus Query 242 TTGATCTATCTATTCAGCT-T-AAGGCTAAAATTGTTAGCAGAGACAAAAAAGATGATTT 299 |||||||||||||| || | | |||| |||| || ||||||||||||||| || ||| Sbjct 131 TTGATCTATCTATTAAG-TGTAAAGG-TAAACTTATTAGCAGAGACAAAACAGGTGAGGA 188 Query 300 ATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTA-C-GG--GAA- 354 ||| | |||| |||| |||||||||| ||| |||| ||||||||| | || || Sbjct 189 ATTATATGTGTCTCGAGTCTTTCACTGCAATGGTTTATTGTTATGCGTATCAGGAAAAAC 248 Query 355 -A---A--A-A-T--GCTTGTGGTTTTG-AACCCGTA-TTGGGGACAAACAAAACGGATC 402 | | | | | |||||||| |||| || ||||| ||||||| || ||||| || || Sbjct 249 TAGTCATGATACTAGGCTTGTGG-TTTGTAATCCGTATTTGGGGA-AACCAAAATGGGTC 306 Query 403 -ATGCCAAGACCTCCTT-TCGGG-TGCTTCGACAGGTATGCTCTCGGATACGACAAATCC 459 | |||| | | || | ||| | | | |||| | |||||||||||| ||||||| Sbjct 307 AAACCCAA-AAATAATTAT-GGGATAC-TAGACAAATTTGCTCTCGGATATGACAAAT-T 362 Query 460 A-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCA-ATATCT 517 | |||||||| |||||||| ||||| ||| || | | | | ||||| || | | |||| Sbjct 363 ATGCGGTAGCTACAAAATCTTGAGGATTTACGAT-T--TCGATAATAAACT-AGAAATCT 418 Query 518 ACGATTTGAGCTCTAGTTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGAG 576 |||| |||||||||| |||||||||||||||| | || |||| ||| ||| |||| ||| Sbjct 419 ACGAATTGAGCTCTAATTCATGGATGATTCCT-AGTGACACTTTTGGACGGGATAAAGAG 477 Query 577 TATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAA 636 | |||| |||| |||||||||| || ||| ||||||| |||| ||||| |||||| ||| Sbjct 478 TGTATGCAACATGGCGTGTCTTCCAAGGGAAATACTTATTGGTGTGCTAGAGATAAAGAA 537 Query 637 TCA-ATAGACTGGTACT-TATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACAC-CT 693 ||| | | | | ||| | | || |||||||||||||||||||||||||| ||| | | | Sbjct 538 TCACA-ATA-TTGTAATCTGTTCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGC- 594 Query 694 CTGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCT 753 ||||| |||||| || ||| || | ||| | | | | |||||||||| Sbjct 595 CTGCCACTGCCC-TT--CAAT---GG--A-ACT-T------A---TGT--GTCTCTATCT 633 Query 754 GCTCTTAAAGAAGAGAAGCTTGCGGTGTTACT--A----TGGGAT--A-C--A-ATGGTT 801 | ||||||||||| ||||| |||||||| | | | |||| | | | || | Sbjct 634 ACGGTTAAAGAAGAGCAGCTTACGGTGTTATTACAGCCGTCGGATAAATCTGAGATAGAG 693 Query 802 ATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTT 861 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || Sbjct 694 ATTTGGGTTACGAACAAGATTGAGCCTGATGAAGTGTCGTGGAGCATCTTCTTGAAAGTT 753 Query 862 GATATGGAAC 871 || ||| ||| Sbjct 754 GAAATG-AAC 762 > Ahg925743 jgi|Araly1|925743|scaffold_201304.1 Length=1229 Score = 78.7 bits (42), Expect = 8e-14 Identities = 53/58 (91%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 654 ATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAGT 711 ||| |||||||||||||||||||||||||||||| | | |||||||||||| |||||| Sbjct 733 ATT-TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTGCCATTTAGT 789 > Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 Length=1608 Score = 73.1 bits (39), Expect = 4e-12 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAGT 711 |||||||||||||||||||||||||||||| | | | |||||||||| |||||| Sbjct 1132 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTCTGCCATTTAGT 1185 > Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 Length=1167 Score = 69.4 bits (37), Expect = 5e-11 Identities = 52/59 (88%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAG 710 ||||| |||||||||||||||||||||||||||||| | | | ||||| |||| ||||| Sbjct 695 TTATT-TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTAG 752 Score = 58.4 bits (31), Expect = 1e-07 Identities = 38/41 (93%), Gaps = 2/41 (5%) Strand=Plus/Plus Query 897 TTTCTTCATTGACGAGGAAAAGAAAGTCGC-AGTTGTGTTT 936 |||||||||||||||||||||||||||||| | ||| |||| Sbjct 936 TTTCTTCATTGACGAGGAAAAGAAAGTCGCCA-TTGGGTTT 975 > Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 Length=903 Score = 65.8 bits (35), Expect = 7e-10 Identities = 41/44 (93%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCT 701 |||||||||||||||||||||||||||||| | | ||||||||| Sbjct 616 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCT 659 > Ahg929853 jgi|Araly1|929853|scaffold_302310.1 Length=935 Score = 62.1 bits (33), Expect = 8e-09 Identities = 45/51 (88%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTT 708 |||||||||||||||||||||||||||||| | | ||| ||||| || ||| Sbjct 537 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTTCCATTT 587 > Ahg929852 jgi|Araly1|929852|scaffold_302309.1 Length=1123 Score = 60.2 bits (32), Expect = 3e-08 Identities = 45/51 (88%), Gaps = 2/51 (4%) Strand=Plus/Plus Query 659 GTTTTGATTTTACAAGAGAGAGATTTGGAACACCTC-TGCCTCTGCCCTTT 708 ||||||||||||||||||||||||||||| | | || | |||||||| ||| Sbjct 676 GTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCTGCCATTT 725 > Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964 Length=1383 Score = 60.2 bits (32), Expect = 3e-08 Identities = 42/47 (89%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCC 704 ||||||||||||||||||||||||||||| | | ||| |||||||| Sbjct 679 TGTTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTCTACCTCTGCC 725 > Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1 Length=973 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 656 TATGTTTTGATTTTACAAGAGAGAGATTTGG 686 ||||||||||||||||||||||||||||||| Sbjct 526 TATGTTTTGATTTTACAAGAGAGAGATTTGG 556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5