BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20740.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930021 jgi|Araly1|930021|scaffold_302478.1 1936 0.0
Ahg479599 jgi|Araly1|479599|fgenesh2_kg.3__2300__AT3G20730.1 387 2e-106
> Ahg930021 jgi|Araly1|930021|scaffold_302478.1
Length=1152
Score = 1936 bits (1048), Expect = 0.0
Identities = 1121/1156 (97%), Gaps = 5/1156 (0%)
Strand=Plus/Plus
Query 176 GAGAGAGAG-ATTTCGAATATCGAATGTCGAAGATAACCTTAGGGAACGAGTCAATAGTT 234
||||||||| |||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct 1 GAGAGAGAGAATTTCG-A-GT-G-ATGTCGAAGATAACGTTAGGGAACGAGTCAATTGTT 56
Query 235 GGGTCTTTGACTCCATCGAATAAGAAATCGTACAAAGTGACGAATAGGATTCAGGAAGGG 294
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 57 GGGTCTTTGACTCCATCGAACAAGAAATCGTACAAAGTGACGAATAGGATTCAAGAAGGG 116
Query 295 AAGAAACCTTTGTATGCTGTTGTTTTCAACTTCCTTGATGCTCGTTTCTTCGATGTCTTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAGAAACCTTTGTATGCTGTTGTTTTCAACTTCCTTGATGCTCGTTTCTTCGATGTCTTC 176
Query 355 GTTACCGCTGGTGGAAATCGGATTACTCTGTACAATTGTCTCGGAGATGGTGCCATATCA 414
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTTACCGCTGGTGGTAATCGGATTACTCTGTACAATTGTCTCGGAGATGGTGCCATATCA 236
Query 415 GCATTGCAATCCTATGCTGATGAAGATAAGGAAGAGTCGTTTTACACGGTAAGTTGGGCG 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 GCATTGCAATCCTATGCTGATGAAGATAAGGAAGAGTCGTTTTACACTGTAAGTTGGGCG 296
Query 475 TGTGGCGTTAATGGGAACCCATATGTTGCGGCTGGAGGAGTAAAAGGTATAATCCGAGTC 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 297 TGTGGCGTTAATGGGAACCCATATGTTGCGGCTGGAGGAGTAAAAGGCATAATCCGAGTC 356
Query 535 ATTGACGTCAACAGTGAAACGATTCATAAGAGTCTTGTGGGTCATGGAGATTCAGTGAAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATTGACGTCAACAGTGAAACGATTCATAAGAGTCTTGTGGGTCATGGAGATTCAGTGAAC 416
Query 595 GAAATCAGGACACAACCTTTAAAACCTCAACTTGTGATTACTGCTAGCAAGGATGAATCT 654
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAAATCAGGACACAACCTTTGAAACCTCAACTTGTGATTACTGCTAGCAAGGATGAATCT 476
Query 655 GTTCGTTTGTGGAATGTTGAAACTGGGATATGTATTTTGATATTTGCTGGAGCTGGAGGT 714
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 GTTCGTTTGTGGAATGTTGAAACTGGGATATGTATTCTGATATTTGCTGGAGCTGGAGGT 536
Query 715 CATCGCTATGAAGTTCTAAGTGTGGATTTTCATCCGTCTGATATTTACCGCTTTGCTAGT 774
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 537 CATCGCTATGAAGTTCTAAGTGTGGATTTTCATCCTTCTGATATTTACCGTTTTGCTAGT 596
Query 775 TGTGGTATGGACACCACTATTAAAATATGGTCAATGAAAGAGTTTTGGACGTACGTCGAG 834
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 597 TGTGGTATGGACACCACTATTAAAATATGGTCGATGAAAGAGTTTTGGACATACGTCGAG 656
Query 835 AAGTCATTCACATGGACTGATGATCCATCAAAATTCCCCACAAAATTTGTCCAATTCCCT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 AAGTCATTCACATGGACTGATGATCCATCAAAATTCCCCACAAAATTTGTCCAATTTCCT 716
Query 895 GTATTTACAGCTTCCATTCATACAAATTATGTAGATTGTAACCGTTGGTTTGGTGATTTT 954
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTATTTACAGCTTCGGTTCATACAAATTATGTAGATTGTAACCGTTGGTTTGGTGATTTT 776
Query 955 ATCCTCTCAAAGAGTGTGGACAACGAGATCCTGTTGTGGGAACCACAACTGAAAGAGAAT 1014
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 777 ATCCTCTCAAAGAGTGTGGACAACGAGATTCTGTTGTGGGAACCACAACTGAAAGAGAAT 836
Query 1015 TCTCCTGGCGAGGGAGCTTCAGATGTTCTATTAAGATACCCGGTTCCAATGTGTGATATT 1074
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTCCAGGAGAGGGAGCTTCAGATGTTCTATTAAGATACCCGGTTCCAATGTGTGATATT 896
Query 1075 TGGTTTATCAAGTTTTCTTGTGACCTCCATTTAAGTTCTGTTGCGATAGGTAATCAGGAA 1134
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 897 TGGTTTATCAAGTTTTCTTGTGACCTCCATTTAAGTTCTGTTGCTATAGGTAATCAGGAC 956
Query 1135 GGAAAGGTTTATGTCTGGGATTTGAAAAGTTGCCCTCCTGTTTTGATTACAAAGTTATCA 1194
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 957 GGAAAGATTTATGTCTGGGATTTAAAAAGTTGCCCTCCTGTTTTGATTACAAAGTTATCA 1016
Query 1195 CACAATCAATCAAAGTCTGTAATCAGGCAAACAGCCATGTCTGTCGATGGAAGCACGATT 1254
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1017 CACAATCAATCGAAGTCTGTAATCAGGCAAACCGCCATGTCTGTCGATGGAAGCACAATT 1076
Query 1255 CTTGCTTGCTGCGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAGTAGCGGTCT 1314
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 CTTGCTTGCTGTGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAGTAGTGGTCT 1136
Query 1315 GAGTCTTGTAGGAATT 1330
| ||||||||||||||
Sbjct 1137 GGGTCTTGTAGGAATT 1152
> Ahg479599 jgi|Araly1|479599|fgenesh2_kg.3__2300__AT3G20730.1
Length=1959
Score = 387 bits (209), Expect = 2e-106
Identities = 290/327 (89%), Gaps = 14/327 (4%)
Strand=Plus/Minus
Query 1246 AGCACGATTCTTGCTTGCTGCGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAG 1305
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1947 AGCACAATTCTTGCTTGCTGTGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAG 1888
Query 1306 TAGCGGTCTGAGTCTTGTAGGAATTGATGAATTAGGAGTGCGAAGAAATGAGATATCCAT 1365
||| ||||||| ||||||||||||||||||||||||| || | | | |||||||||||
Sbjct 1887 TAGTGGTCTGAATCTTGTAGGAATTGATGAATTAGGAATGTG--G--A-GAGATATCCAT 1833
Query 1366 TCTTTTATTGTAATTCTGATCAT-G---T----TGCTACTCCCTGAGACCTTGAGATGCT 1417
||||||||||||| ||||||||| | | | ||||||| |||||||||||||||||
Sbjct 1832 TCTTTTATTGTAACTCTGATCATGGTTCTACACTTCTACTCCTTGAGACCTTGAGATGCT 1773
Query 1418 CTTTGTAGCCTTGTTAACGTCCACCCTTGTACCACAGTGTATACCCTTTCTGGAGATTTT 1477
|||| ||||||||||||| || || ||||||| |||||||| ||||||| ||||||||||
Sbjct 1772 CTTTATAGCCTTGTTAACTTCGACTCTTGTACTACAGTGTAAACCCTTTGTGGAGATTTT 1713
Query 1478 GTCTTATTCTCTT-AGTTCAATACACAAGGCTGTATCCTGGAGCTTTATTGCAGGAACCA 1536
||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1712 GTCTTATTCCCTTCTGTTTAATACACAAGGCTGTATCCTGGAGCTTTATTGCAGGAAGCA 1653
Query 1537 CTCTCTTTCATAAGCTTTCTAGTATTC 1563
|||||||||||||||| ||| || |||
Sbjct 1652 CTCTCTTTCATAAGCTGTCTGGTCTTC 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5