BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20750.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905096 jgi|Araly1|905096|Al_scaffold_0003_2224 806 0.0
> Ahg905096 jgi|Araly1|905096|Al_scaffold_0003_2224
Length=642
Score = 806 bits (436), Expect = 0.0
Identities = 578/644 (90%), Gaps = 19/644 (3%)
Strand=Plus/Plus
Query 89 ATGGAGCCGGAACTGGACTTAACACTGAAGTTGGGTTTGCCAAATTCGACTGTTGAGACA 148
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGCAGGAATTGGACTTAACACTGAAGTTGGGTTTGCCAAATTCGACTGTTGACACA 60
Query 149 CATCTGACCTTAAGCCCTCCCACCACCACCACTGATCAGGGA-ACCAACGTCGTGGACGG 207
||||||| ||||| || | |||||||||||||| |||||||| | |||| | |||||
Sbjct 61 CATCTGAGCTTAAACCTTTCCACCACCACCACTAATCAGGGAGA-CAACAACAACGACGG 119
Query 208 CGGAGAAGTTATAAACCACCGTCGGGGTCTTTTGGGAGATGATGAAGTGATCCACAACGA 267
||| |||||| | ||| ||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 120 CGGCGAAGTTTTGAACTACCGTCGGGCTCTTTGGGGAAATGATGAAGTGATCCACAACGA 179
Query 268 ACCTACAAGAAACAACGTGGAGTTCAACATCAGAATCTACAATTACGTCTTTCAACAGTT 327
| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 180 AGCTGCAAGAAACAACGTGGAATTCAACATCAGAATCTACAATTACGTTTTTCAACAGAT 239
Query 328 TGTTGGTGCCCCCAACACCTTGAACTTTGCTCCTTATCCGATG-C--CT------CCGTC 378
|| ||| |||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 240 TGCTGGCGCCCCCAACACCTTGAACTTTGCTCCTTATCCGATGCCATCTCCGGCACCGGC 299
Query 379 TCCGGCACCGGCA-C--CT---GAGACTCCTCCAGTGAGTGATGAGTATGTTCTGATTGA 432
||||||||| ||| | || ||||||||||| | ||||||||||||||||||||||||
Sbjct 300 TCCGGCACCAGCACCGGCTCCGGAGACTCCTCCGGCGAGTGATGAGTATGTTCTGATTGA 359
Query 433 TGTTCCTGCTAGGAGAGCTCGTCGTAACAACTCTAC-GGTGATGACAAACTCTTGGAAGG 491
||||||||||||||||| |||||||||||||||| | | |||| ||||| ||||||| |
Sbjct 360 TGTTCCTGCTAGGAGAGTTCGTCGTAACAACTCT-CAGACGATGGCAAACACTTGGAACG 418
Query 492 AAAACGCAACCCCGAAGCGGATTCGCGGTTGTGGTGGATTCTGCGGGGGGAGGATTGAAG 551
||||||||||| |||||||| |||||||||| ||||||| ||||||||| ||||||||||
Sbjct 419 AAAACGCAACCGCGAAGCGGCTTCGCGGTTGCGGTGGATCCTGCGGGGGAAGGATTGAAG 478
Query 552 GGATGAAGAAGTGTACGAACATGAATTGTAACGCACTTAACACTCCTATGTGGCGAAGAG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 479 GGATGAAGAAGTGTACGAACATGAATTGTAACGCACTTAACACTCCTATGTGGCGCAGGG 538
Query 612 GTCCTCTTGGTCCTAAGAGTTTATGCAATGCTTGTGGGATCAAGTTCAGGAAGGAGGAAG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCCTCTTGGTCCTAAGAGTTTATGCAATGCTTGTGGGATCAAGTTCAGGAAGGAGGAAG 598
Query 672 AGAGGAAAGCCAAAAGAAATGTAGTGATTGTATTAGATGACTAA 715
||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 599 AGAGGAAAGCCAAAAGAAATGGAGTGATTGAATTAGATAACTAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5