BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20760.1
Length=2442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342232 jgi|Araly1|342232|fgenesh1_pg.C_scaffold_3001995 1700 0.0
> Ahg342232 jgi|Araly1|342232|fgenesh1_pg.C_scaffold_3001995
Length=1188
Score = 1700 bits (920), Expect = 0.0
Identities = 1075/1150 (93%), Gaps = 10/1150 (1%)
Strand=Plus/Plus
Query 760 ATGAGAAACTCGGTGAAATGGGAAACGGAATTAACCGGAGATCGCAGCAGGAGAAGAGAA 819
|||||||||||||||||| ||||| || |||||||| ||||||||||||| |||||||||
Sbjct 1 ATGAGAAACTCGGTGAAACGGGAAGCGAAATTAACCAGAGATCGCAGCAGCAGAAGAGAA 60
Query 820 GCCGATGAGTCCTCGGAGACACC-AAAGATCGTAAAGAAGGAGAAGC-GTAGTAAGACCG 877
|||| ||||||||| |||| ||| ||| ||||| ||||||||||||| | ||||| ||||
Sbjct 61 GCCGGTGAGTCCTCTGAGAGACCGAAA-ATCGTGAAGAAGGAGAAGCAG-AGTAAAACCG 118
Query 878 TAATTGCTTCATTACGGCCTCAACAACCGCCGATTCAGGAAGAAGAAGAACAAGGAATTG 937
| ||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||
Sbjct 119 TTATTGCTTCATTACGGCCTCAAGAACCACCGATTCAGGAAGAGGACGAACAAGGAATTG 178
Query 938 CTGATCGGAGAGCTATAAGATCTCAGTATCTTGCTCTTACCCA-CAAGATCAAAGATGCT 996
|||||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||
Sbjct 179 CTGATCGGAGAGCTATAAGATCTCAGTACCTTGCTCTTACCCATC-AGATTAAAGATGCT 237
Query 997 AAAGATGACTTGACAAAAATTGATTCTAACAAGTTCAA-CAGTATCATTAATGAGGTTGA 1055
|||||||| |||||||||||||||||| ||||||| || | |||||||||||||||||||
Sbjct 238 AAAGATGATTTGACAAAAATTGATTCTGACAAGTTTAAGC-GTATCATTAATGAGGTTGA 296
Query 1056 GAATTTGCACCAGAAAGTTCGGAAGCCTAGAGAGCAGATTGCTGATGCGGAGGCGCTTTT 1115
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 297 GAATTTGCATCAGAAAGTTAAGAAGCCTAGAGAGCAAATTGCTGATGCGGAGGCGCTTTT 356
Query 1116 GGATTTAACGAATAGTGTGGTTTCATCGGTGAAATCGCAATCAGCTCATGGTGGTGTTTC 1175
|||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 357 AGATTTAGCGAATAGTGTGGTTTCATCGGTGAAATCGCAATCTGCTCATGGAGGTGTTTC 416
Query 1176 TCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGCAAAACTTCTTTAAGAATTGA 1235
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 417 TCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGGAAAACTTGTTTAAGAATTGA 476
Query 1236 TGCTGATGAAAATACACAAGTGTCAATGAAGTGGAAGGATCTTGGGTTTACGGTCTGTTC 1295
||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 477 TGCTGATGACAATACACAAGTGTCATTGAAGTGGAAGGACCTTGGGTTTACGGTCTGCTC 536
Query 1296 CACGGTTTTGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGTATAGTGAAATGAA 1355
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 537 TACAGTTATGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGGATAGTGAATTGAA 596
Query 1356 ACAAAGGAAAA-GTAGAGTGGGCAACAGAAAACGTACAAAGCCTGGTGCTGGTGTTAAGC 1414
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 ACAAAGGAAAAGGT-CAGTGGGCAACAGAAAACGTACAAAGCCTGGTGTTGGTGTTAAGC 655
Query 1415 CAGAGGAGGTTGATGATACAGAAGCTGAAAAGAAAAGTGATACAGACAATAACATGGCAG 1474
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 656 CAGAGGAGGTTGATGATAAAGAAGGTGAAAAGAAAAGTGATACAGACAATAACATGGCAG 715
Query 1475 TAATGTTTAACATCTTGCGGAAAAACAAACGTGTCAAGATTGAGAATTTGGTGCTCAATA 1534
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 TAATGTTTAACATCTTGAGGAAAAACAAACGTGTCAAGATTGAAAATTTGGTGCTCAATA 775
Query 1535 GGAAATCATTTGCTCAGACAGCAGAGAATATGTTCGCACTTTCATTCCTGGTGAAAGATG 1594
||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 776 GGAAATCATTTGCTCAGACAGCAGAGAATGTGTTCGCACTATCATTCTTGGTGAAAGATG 835
Query 1595 GACGTGTTGAGATAACTGTTGATAACAATGGTTCTCATTTTGTTGAGCCAAGGAATGCTC 1654
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 836 GACGAGTTGAGATAACTGTCGATAACAATGGTTCTCATTTCGTTGAGCCAAGGAATGCTC 895
Query 1655 CTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTATAACCATTTTGTTCTTAGATTTG 1714
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 896 CTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTACAACCATTTCGTACTTAGATTTG 955
Query 1715 ATTACAAAGATTGGGAGCCAATGAGCAAAATGGTGGCAGTGGGAGAGGAGCTGATGCCAC 1774
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 956 ATTACAAAGATTGGGAGCCAATGAGCACAATGGTGGCAGTGGGAGAGGAGCTGATGCCAC 1015
Query 1775 TCAGGGAAACCAAAGTTGCTCAAGATTCAATAGAACTGTCGAGGAAACAAGGTTCGGTGA 1834
||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 1016 ACAGGGAAACCAAAGTCGCACAAGATTCAAGAGAACTGTCGAGGAAACAAGGTTCGGTGA 1075
Query 1835 TTCAAGAGGAAACGGTCGTCGAAGATTCTTCTAACATGGAAGGCGATAATGAAGATAGTA 1894
||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1076 TTCAAGATGAAACGGTTGTCGAAGATTCTTCTAACATCGAAGGCGATAATAAAGATAGTC 1135
Query 1895 AAAATGGTGG 1904
| ||||||||
Sbjct 1136 ATAATGGTGG 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92026031920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5