BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20770.1
Length=2413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479603 jgi|Araly1|479603|fgenesh2_kg.3__2304__AT3G20770.1 3432 0.0
Ahg481586 jgi|Araly1|481586|fgenesh2_kg.4__646__AT2G27050.1 1074 0.0
Ahg926748 jgi|Araly1|926748|scaffold_202309.1 195 2e-48
Ahg351206 jgi|Araly1|351206|fgenesh1_pg.C_scaffold_6001799 163 5e-39
> Ahg479603 jgi|Araly1|479603|fgenesh2_kg.3__2304__AT3G20770.1
Length=2225
Score = 3432 bits (1858), Expect = 0.0
Identities = 2114/2235 (95%), Gaps = 28/2235 (1%)
Strand=Plus/Plus
Query 5 AGAGACTCCACAAAGAAACGCAAATAAACAAAAGTCGCTTTCTAGCCACGTGATCTTTCG 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGACTCCACAAAGAAACGCAAATAAACAAAAGTCGCTTTCTAGCCACGTGATCTTTCG 60
Query 65 TCGAC---T-Tt-t-cttcttcttcttcttcttcctcttcCTCATCTCGTA--TCTCTAA 116
||||| | || | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCGACTTTTCTTCTCCTTCTTCTTCTTCTTCTTCCTCTTCCTCATCTCGTATCTCTCTAA 120
Query 117 CTTTTGTCGAAG---TTCTTTTGATGAAACTAGGGTTTATTATCTTCTCCTTCTTTTTCC 173
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTTTTGTCGAAGTTTTTTTTTTGATGAAATTAGGGTTTATTATCTTCTCCTTCTTTTTCC 180
Query 174 CATCACCATAGAAAAGGCAGAGACC-TTTTTCTTCATCATTTTTATTCTCCTTCTTCTTC 232
| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 181 CGTCACCGTAGAAAAGGCAGAGACCTTTTTTCTTTATCATTTTTA------TTCTTCTTC 234
Query 233 TGCTGTTCATTTCTCCAGGT--TACAATGATGTTTAATGAGATGGGAATGTGTGGAAACA 290
|||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 235 TGCTCTTCATTTCTCCAGGTACTACGATGATGTTTAACGAGATGGGAATGTGTGGAAACA 294
Query 291 TGGATTTCTTCTCTTCTGGATCACTTGGTGAAGTTGATTTCTGTCCTGTTCCACAAGCTG 350
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 295 TGGATTTCTTCTCTTCTGGATCTCTTGGTGAAGTTGATTTCTGTACTGCTCCACAAGCTG 354
Query 351 AGCCTGATTCCATTGTTGAAGATGACTATACTGATGATGAGATTGATGTTGATGAATTGG 410
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 355 AGCCTGATTCCATTGTTGAAGACGACTATACTGATGATGAGATCGATGTCGATGAATTGG 414
Query 411 AGAGGAGGATGTGGAGAGACAAAATGCGGCTTAAACGTCTCAAGGAGCAGGATAAGGGTA 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 415 AGAGGAGGATGTGGAGAGACAAAATGCGGCTTAAACGTCTCAAGGAGCAGGATAAGAGCA 474
Query 471 AAGAAGGTGTTGATGCTGCTAAACAGAGGCAGTCTCAAGAGCAAGCTAGGAGGAAGAAAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAGAAGGTGTTGATGCTGCTAAACAGAGGCAGTCTCAAGAGCAAGCTAGGAGGAAGAAAA 534
Query 531 TGTCTAGAGCTCAAGATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTTTGTAAAG 590
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 535 TGTCTAGGGCTCAAGATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTGTGTAAAG 594
Query 591 CTCAAGGCTTTGTTTATGGGATTATTCCGGAGAATGGGAAGCCTGTGACTGGTGCTTCTG 650
|||||||||||||||| ||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct 595 CTCAAGGCTTTGTTTACGGGATTATTCCCGAAAATGGGAAACCTGTTACTGGTGCATCTG 654
Query 651 ATAATTTAAGGGAGTGGTGGAAAGATAAGGTTAGGTTTGATCGTAATGGTCCTGCGGCTA 710
||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 655 ATAATCTCCGGGAGTGGTGGAAAGATAAGGTCAGGTTTGATCGTAATGGTCCTGCGGCTA 714
Query 711 TTACCAAGTATCAAGCGGAGAATAATATCCCGGGGATTCATGAAGGTAATAACCCGATTG 770
|||| || || ||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 715 TTACGAAATACCAAGCGGAGAACAATATCCCGGGGATACATGAAGGTAACAATCCGATTG 774
Query 771 GACCGACTCCTCATACCT-TGCAAGAGCTTCAAGACACGACTCTTGGATCGCTTTTGTCT 829
| || ||||| || | || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 GGCCAACTCCGCACA-CTCTGCAAGAGCTTCAAGACACTACTCTTGGATCGCTTTTGTCT 833
Query 830 GCGTTGATGCAACACTGTGATCCTCCTCAGAGACGTTTTCCTTTGGAGAAAGGAGTTCCT 889
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 834 GCGTTGATGCAACACTGTGATCCTCCTCAGAGACGGTTTCCTTTGGAGAAAGGTGTTCCT 893
Query 890 CCTCCGTGGTGGCCTAATGGGAAAGAGGATTGGTGGCCTCAACTTGGTTTGCCTAAAGAT 949
|||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 894 CCTCCGTGGTGGCCTAGCGGGAACGAGGATTGGTGGCCTCAACTCGGTTTGCCTAAAGAT 953
Query 950 CAAGGTCCTGCACCTTACAAGAAGCCTCATGATTTGAAGAAGGCGTGGAAAGTCGGCGTT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CAAGGTCCTGCACCTTACAAGAAGCCTCATGATTTGAAGAAGGCGTGGAAAGTCGGCGTT 1013
Query 1010 TTGACTGCGGTTATCAAGCATATGTTTCCTGATATTGCTAAGATCCGTAAGCTCGTGAGG 1069
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTGACTGCAGTTATCAAGCATATGTTTCCTGATATTGCTAAGATCCGTAAGCTCGTGAGG 1073
Query 1070 CAATCTAAATGTTTGCAGGATAAGATGACTGCTAAAGAGAGTGCTACCTGGCTTGCTATT 1129
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1074 CAATCTAAATGCTTGCAGGATAAGATGACTGCTAAAGAGAGTGCTACTTGGCTTGCCATT 1133
Query 1130 ATTAACCAAGAAGAGTCCTTGGCTAGAGAGCTTTATCCCGAGTCATGTCCACCTCTTTCT 1189
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 ATTAACCAAGAAGAGTCCTTGGCTAGAGAGCTTTATCCCGAGTCTTGTCCACCTCTTTCT 1193
Query 1190 CTGTCTGGTGGAAGTTGCTCGCTTCTGATGAATGATTGCAGTCAATACGATGTTGAAGGT 1249
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTGTCTGGTGGAAGTTGCTCGCTCCTGATGAATGATTGCAGTCAATACGATGTTGAAGGT 1253
Query 1250 TTCGAGAAGGAGTCTCACTATGAAGTGGAAGAGCTCAAGCCAGAAAAAGTTATGAATTCT 1309
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1254 TTCGAGAAGGAGTCTCACTATGAAGTGGAAGAGCTCAAGCCAGAGAAAGTGATGAATTCT 1313
Query 1310 TCAAACTTTGGGATGGTTGCTAAAATGCATGACTTTCCTGTCAAAGAAGAAGTCCCAGCA 1369
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1314 TCAAACTTTGGGATGGCTGCTAAAATGCATGACTTTCCTGTCAAAGAAGAAGTCCCAACA 1373
Query 1370 GGAAACTCGGAATTCATGAGAAAGAGAAAGCCAAACAGAGATCTGAACACTATTATGGAC 1429
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1374 GGAAACTCGGAATTCATGAGAAAGAGGAAGACAAACAGAGATCTGAACACTATTATGGAC 1433
Query 1430 AGAACCGTTTTCACCTGCGAGAATCTTGGGTGTGCGCACAGCGAAATCAGCCGGGGATTT 1489
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1434 AGAACGGTTTTCACCTGCGAGAATCTTGGGTGTGCACACAGCGAAATCAGCCGGGGATTT 1493
Query 1490 CTGGATAGGAATTCGAGAGACAACCATCAACTGGCATGTCCACATCGAGACAGTCGCTTA 1549
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1494 CTGGATAGGAATTCAAGAGACAACCATCAATTGGCATGTCCACATCGAGACAATTGCTTA 1553
Query 1550 CCGTATGGAGCAGCACCATCCAGGTTTCATGTCAATGAAGTTAAGCCTGTAGTTGGATTT 1609
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1554 CCGTATGGAGCAGCAGCATCCAGGTTCCATGTCAATGAAGTTAAGCCTGTAGTTGGATTT 1613
Query 1610 CCTCAGCCAAGGCCAGTGAACTCAGTAGCCCAACCAATTGACTTAACGGGTATAGTTCCT 1669
||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1614 TCTCAGCCGAGGCCAGTGAACTCTGTGGCCCAACCAATCGACTTAACGGGTATAGTTCCT 1673
Query 1670 GAAGATGGACAGAAGATGATCTCAGAGCTCATGTCCATGTACGACAGAAATGTCCAGAGC 1729
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1674 GAAGATGGGCAGAAGATGATCTCCGAGCTCATGTCCATGTACGACAGAAACGTCCAGAGC 1733
Query 1730 AACCAAACCTCTATGGTCATGGAAAATCAAAGCGTGTCACTGCTTCAACCCACAGTCCAT 1789
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1734 AACCAAACTTCTATGGTCATGGAAAATCAAAGCGTGTCACTGCTTCAGCCAACAGTCCAG 1793
Query 1790 AACCATCAAGAACATCTCCAGTTCCCAGGAAACATGGTGGAAGGAAGTTTCTTTGAAGAC 1849
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 AATCATCAAGAACATCTCCAGTTCCCAGGAAACATGGTGGAAGGAAGTTTCTTTGAAGAC 1853
Query 1850 TTGAACATCCcaaacagagcaaacaacaacaacagcagcaacaatcaaacgttttttcaa 1909
|||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||
Sbjct 1854 TTGAACATCCCAAACAGAGCAAACAACATCAACAGCAG---CAATCAAACGTATTTCCAA 1910
Query 1910 ggg---aacaacaacaacaacaaTGTGTTTAAGTTCGACACTGCAGATCACAACAACTTT 1966
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1911 GGGAACAACAACAACAACAACAATGGGTTTAAGTTCGACACTGCACATCACAACAACTTT 1970
Query 1967 GAAGCTGCACATAACAACAACAATAACAGTAGCGGCAACAGGTTCCAGCTTGTGTTTGAT 2026
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1971 GAAGCTGCACATAACAACACCAATAACAGTAGCAGCAACAGGTTCCAGCTTGTGTTTGAT 2030
Query 2027 TCCACACCGTTCGACATGGCGTCATTCGATTACAGAGATGATATGTCGATGCCAGGAGTA 2086
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2031 TCTACACCGTTCGACATGGCCTCATTCGATTACAGAGATGATATGTCGATGTCAGGAGTA 2090
Query 2087 GTAGGAACGATGGATGGAATGCAGCAGAAGCAGCAAGATGTATCCATATGGTTCTAAAGT 2146
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 GTAGGAGCGATGGATGGTATGCAGCAGAAGCAGCAAGATGTATCCATATGGTTCTAAAGT 2150
Query 2147 CTTGGTAGTAGATTTCATCTTCTCTTATTTTTATCTTTTGTGTTCTTACATTCACTCAAC 2206
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2151 CTTGGTAGTAGATTTCATCTTCTCTTATTTTTATCTTTTGTGTTCTTACATTCAGTCAAC 2210
Query 2207 CATGTAATATTTTTT 2221
|||||||||||||||
Sbjct 2211 CATGTAATATTTTTT 2225
> Ahg481586 jgi|Araly1|481586|fgenesh2_kg.4__646__AT2G27050.1
Length=2132
Score = 1074 bits (581), Expect = 0.0
Identities = 1259/1570 (80%), Gaps = 112/1570 (7%)
Strand=Plus/Plus
Query 257 ATGATGTTTAATGAGATGGGAATGTGTGGAAACATGGATTTCTTCTC-TTCTGGATCACT 315
|||||||| |||||||||||||||| ||||||||||||||||||||| | || |||
Sbjct 259 ATGATGTTCAATGAGATGGGAATGTATGGAAACATGGATTTCTTCTCATCCT---CCACA 315
Query 316 TGGTGAAGTTGATTTCTGTCCTGTT-CCACAAGCTGAGCCTGATTCCA-TTGTTGAAGA- 372
| | | ||| | ||||| || |||||| | || | || ||| ||||||||||
Sbjct 316 T-CT---CTCGATGTGTGTCC-ATTACCACAAACAGAACAAGA-ACCAGTTGTTGAAGAT 369
Query 373 -T-GACTATACTGATGATGAGATTGATGTTGATGA-ATTGGAGAGGAGGATGTGGAGAGA 429
| |||||||| |||||||| || ||||| ||||| || |||| ||||||||||||||
Sbjct 370 GTCGACTATACCGATGATGAAATGGATGTGGATGAGCTT-GAGAAAAGGATGTGGAGAGA 428
Query 430 CAAAATGCGGCTT-AAACGTCTCAAGGAGCAG--GA-TAAGGGTAAAGAAGGTGTTGATG 485
|||||||| | || |||||||||||||||||| || |||| ||||||||||||| ||||
Sbjct 429 CAAAATGC-GTTTGAAACGTCTCAAGGAGCAGCAGAGTAAGTGTAAAGAAGGTGTCGATG 487
Query 486 CTGCTAAACAGAGGCAGTCTCAAGAGCAAGCTAGGAGGAAGAAAATGTCTAGAGCTCAAG 545
| | || ||||| ||||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct 488 GTTCGAAGCAGAGACAGTCGCAGGAGCAAGCGAGGAGGAAGAAGATGTCTAGAGCTCAAG 547
Query 546 ATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTTT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTTT 607
Query 606 ATGGGATTATTCCGGAGAATGGG-AAGCCTGTGACTGGTGCTTCTGATAATTTAAGGGAG 664
|||| |||||||| ||||| ||| |||||||||||||||||||| |||||||| |||||
Sbjct 608 ATGGTATTATTCCTGAGAA-GGGTAAGCCTGTGACTGGTGCTTCGGATAATTTGAGGGAA 666
Query 665 TGGTGGAAAGATAAGGTTAGGTTTGATCGTAATGGTCCTGCGGCTATTACCAAGTATCAA 724
|||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct 667 TGGTGGAAAGATAAGGTTAGGTTTGATCGTAATGGTCCAGCTGCTATTGCCAAGTATCAA 726
Query 725 GCGGAGAATAATATCCC-GG-GG-ATTCATGAAGGTAATAACCCGATTGGACCGACTCCT 781
|| ||||||||||| || || || | | |||| |||| | | ||||||| || ||
Sbjct 727 GCAGAGAATAATATTCCTGGAGGGAGTAATGATTGTAACAGTTTGGTTGGACCAACACCG 786
Query 782 CATAC-CTTGCAAGAGCTTCAAGACACGACTCTTGGATCGCTTTTGTCTGCGTTGATGCA 840
||||| ||| || |||||||| |||||||||||||| |||||||| || || ||||||||
Sbjct 787 CATACGCTT-CAGGAGCTTCAGGACACGACTCTTGGTTCGCTTTTATCGGCTTTGATGCA 845
Query 841 ACACTGTGATCCTCCTCAGAGACGTTTTCCTTTGGAGAAAGGAGTTCCTCCTCCGTGGTG 900
||| ||||||||||| |||||||| ||||| ||||||||||||||| |||| || |||||
Sbjct 846 ACATTGTGATCCTCCGCAGAGACGGTTTCCATTGGAGAAAGGAGTTTCTCCACCTTGGTG 905
Query 901 GCCTAATGGGAAAGAGGATTGGTGGCCTCAACTTGGTTTGCCTAAA-GATCAAGGTCCTG 959
|||||||||||| || |||||||||||||| ||||||||||| ||| || |||||||||
Sbjct 906 GCCTAATGGGAATGAAGATTGGTGGCCTCAGCTTGGTTTGCC-AAATGAGCAAGGTCCTC 964
Query 960 CACCTTACAAGAAGCCTCATGATTTGAAGAAGGCGTGGAAAGTCGGCGTTTTGACTGCGG 1019
| ||||| ||||||||||||||||||||||| || |||||||| || |||||||||||||
Sbjct 965 CTCCTTATAAGAAGCCTCATGATTTGAAGAAAGCTTGGAAAGTTGGTGTTTTGACTGCGG 1024
Query 1020 TTATCAAGCATATGTTTCCTGATATTGCTAAGATCCGTAAGCTCGTGAGGCAATCTAAAT 1079
| ||||||||||||| ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 1025 TGATCAAGCATATGTCGCCTGATATTGCGAAAATACGTAAGCTTGTGAGGCAATCGAAAT 1084
Query 1080 GTTTGCAGGATAAGATGACTGCTAAAGAGAGTGCTACCTGGCTTGCTATTATTAACCAAG 1139
| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1085 GCTTGCAGGATAAGATGACGGCGAAAGAGAGTGCTACTTGGCTTGCTATTATTAACCAAG 1144
Query 1140 AAGAG-TCCTTGGCTAGAGAGCTTTATCCCGAGTCATGTCCACCTCTTTCT-CTG--TC- 1194
||||| | | ||| | |||||||||||||||||||| || ||||||||| || ||
Sbjct 1145 AAGAGGTTGT-GGCGCGGGAGCTTTATCCCGAGTCATGCCCTCCTCTTTCTTCTTCATCA 1203
Query 1195 TGGT-GG-AAGTTGCTCGCTTCTGATGAATGATTGCAGTCAATACGATGTTGAAGGTTTC 1252
| | || ||| | |||||||| || |||||||| ||| | || || |||||||||||
Sbjct 1204 TCTTTGGGAAGCGGGTCGCTTCTCATTAATGATTGTAGTGAGTATGACGTTGAAGGTTTT 1263
Query 1253 GAGAAGGAGTCT-C--ACTAT-GAAGTGGAAGAGCTCAAGCCAGAAAAAGTTATGA--AT 1306
|||||||| | | | | | || |||||||||| || ||||| | ||||||| |
Sbjct 1264 GAGAAGGAA-CAACCGAGTTTCGATGTGGAAGAGCAAAAACCAGAGATTGTTATGATGAA 1322
Query 1307 TCTTC-A--AA-CTTTGGGATGGTTGCTAAAATGCATGACTTTCCTGTCAAAGAAGAAG- 1361
|| || | || ||||||||| | ||||||||||| | ||||| | |||| || ||
Sbjct 1323 TCCTCTAGCAAGCTTTGGGAT--T-GCTAAAATGCAACATTTTCCCAT-AAAGGAGGAGG 1378
Query 1362 TC-CCA--GCAGG-AAACTCGGAATTCATGAGAAAGAGAAAGCCA-AACAGA-GATCTGA 1415
|| ||| || || ||||| |||||||| ||||||||| |||| | |||| | ||| |||
Sbjct 1379 TCGCCACCGC-GGTAAACTTGGAATTCACGAGAAAGAGGAAGC-AGAACA-ACGATATGA 1435
Query 1416 ACACTAT--T-ATGGACAGAACC-GTT--TT-CACCTGCGAGAATCTTGGGTGTGCGCAC 1468
| ||| | ||||||||| || || || ||| || |||||| |||| | |||
Sbjct 1436 ATGTTATGATTATGGACAGA-CCAGTAAGTTACACTTGTGAGAATGGCCAGTGTTCTCAC 1494
Query 1469 AGCGAAATCAGCCGGGGATTTCTGGATAGGAATTCGAGAGACAACCATCAACTGGCATGT 1528
||| |||| | | ||||||| || |||| ||| || |||||||| ||| ||| |||
Sbjct 1495 AGCAAAATGAATCTTGGATTTCAAGACAGGAGTTCAAGGGACAACCACCAAATGGTTTGT 1554
Query 1529 CCACATC-GAGACAGTCGCTTACCGTATGGAGCAGCACCATCCAGGTTTCATGTCAATG- 1586
||| | | |||||| |||| || ||||||||||| | | | || |||||| | ||
Sbjct 1555 CCATA-CAGAGACAATCGCGTAGCGTATGGAGCATC-C-A---AG-TTTCATATGGGTGG 1607
Query 1587 AAGTTAAGCCTGTAGTTGGATTTCCTCAGCCAAGGCCAGTG-AACTC-AGTAGCCCAACC 1644
|| | || ||||||||| ||||||| ||| | ||| ||| | | | | || | |
Sbjct 1608 AA-TGAAACCTGTAGTT------CCTCAGC-AAG-C-AGTCCAAC-CGA-TCGACCTATC 1655
Query 1645 AATTGACTTAACGGGTATAGTTCCTGAAGATGGACAGAAGATGATCTCAGAGCTCATGTC 1704
|| | ||| || | ||||| ||| | ||||||||||||||| | || || ||| |
Sbjct 1656 AA--G-CTTT--GG--A--GTTCCGGAAAACGGACAGAAGATGATCACCGATCTTATGGC 1706
Query 1705 CATGTACGACAGAAATGTCCAGAGCAACCAAAC-C-TC-T--ATGGTCATGGAAAATCAA 1759
|||||||| ||||||||||||||||||||| | | || | || | ||||||||||||
Sbjct 1707 TATGTACGATAGAAATGTCCAGAGCAACCAAGCTCCTCCTCCATTG--ATGGAAAATCAA 1764
Query 1760 AGCGTG-TCA 1768
||| || |||
Sbjct 1765 AGCATGATCA 1774
> Ahg926748 jgi|Araly1|926748|scaffold_202309.1
Length=1735
Score = 195 bits (105), Expect = 2e-48
Identities = 481/656 (73%), Gaps = 52/656 (8%)
Strand=Plus/Plus
Query 512 CAAGCT-AGGAGGAAGAAAATGTCTAGAGCTCAAGATGGGAT-CTTGAAGTATATGTTGA 569
|||||| | |||||||||||||||||||||||||||||| || ||| ||||| |||||||
Sbjct 249 CAAGCTCA-GAGGAAGAAAATGTCTAGAGCTCAAGATGGTATACTT-AAGTACATGTTGA 306
Query 570 AGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTTTATGGGATTATTCCGGAGAATGGGA 629
|| | |||||||| || |||| || || ||||||||||| || || ||||| || ||||
Sbjct 307 AGCTTATGGAAGTCTGCAAAGTTCGCGGGTTTGTTTATGGTATAATACCGGAAAA-GGGA 365
Query 630 A-GCCTGTGA-CTGGTGCTTCTGATAATTTAAGGGAGTGGTGGAAAGATAAGGTTAGGTT 687
| ||| |||| | ||| | ||||| ||| |||| | ||||||||||| || || | |||
Sbjct 366 AAGCCCGTGAGC-GGTTCCTCTGACAATATAAGAGCTTGGTGGAAAGAGAAAGTGAAGTT 424
Query 688 TGATC-GTAATGGTCCTGCGGCTATTACCAAGTATC-AAGCGGAGAATAATATCCCGGGG 745
|||| | || || || || || ||| | || || | ||| |||| | || | ||
Sbjct 425 TGATAAG-AACGGGCCAGCCGCAATTGCTAAATA-CGAAGAGGAGTGTT-TAGCTTTTGG 481
Query 746 -AT-TCATGAAGGTAATAACCCGA-TTGGACCGACTCCTCATACCTTGCAAGAGCTTCAA 802
| || || || |||| || || | | | | || | || | || || |||
Sbjct 482 TAAATCC-GATGGGAATAG---GAATTCG-CAGTTTGTTC-T-CCA-G---GACCTGCAA 530
Query 803 GACACGACTCTT-GGATCGCTTTTGTCTGCGTTGATGCAACACTGTGATCCTCCTCAGAG 861
|| | ||| || || || || || ||| | ||||||||||| |||||||||||||| ||
Sbjct 531 GATGCAACT-TTAGGGTCTCTGTTATCTTCTTTGATGCAACATTGTGATCCTCCTCAAAG 589
Query 862 -ACGTTTTCCTTTGGAGAAAGG-AGTTCCTCCTCCGTGGTGGCCTAAT-GGGAAAGAGGA 918
| || | || |||| ||||| | | ||||| || |||||||| || ||||| || ||
Sbjct 590 GAAGTAT-CCGCTGGAAAAAGGGACT-CCTCCGCCTTGGTGGCC-AACCGGGAATGAAGA 646
Query 919 TTGGTGGCCTCAA-CTTGGTTTGCCTAAAGATCAAG-GTCCTGCACCTTACA-AGAAGCC 975
|||||| | || || ||| |||| ||| | | || ||||| | | ||||| | || ||
Sbjct 647 ATGGTGGG-TGAAACTCGGTCTGCCCAAA-AGCCAGAGTCCT-C-C-TTACAGAAAA-CC 700
Query 976 TCATGATTTGAAGAAGGCGTGGAAAGTCGGCGTTTTGACTGCGGTTATCAAGCATATGTT 1035
|| ||| | |||||| |||||| || || ||||| || || || ||||| ||||||||
Sbjct 701 GCACGATCTCAAGAAGATGTGGAAGGTTGGAGTTTTAACGGCAGTGATCAATCATATGTT 760
Query 1036 TCCTGATATTGCTAAGATCC-GTAAGC-TCGTGAGGCAATCTAAATGTTTGCAGGATAAG 1093
||||||||||| ||||| | | || | || | || || |||||||| ||||| |||
Sbjct 761 GCCTGATATTGCAAAGATTAAG-AGGCAT-GTTCGCCAGTCGAAATGTTTACAGGACAAG 818
Query 1094 ATGACTGCTAAAGAGAGTGCTACCTGGCTTG-CTATTATT-AACCAAGAAGAGTCC 1147
||||| |||||||||||||| | ||| ||| | || || |||||||| || |||
Sbjct 819 ATGACAGCTAAAGAGAGTGCGATTTGG-TTGGCGGTT-TTGAACCAAGAGGAATCC 872
> Ahg351206 jgi|Araly1|351206|fgenesh1_pg.C_scaffold_6001799
Length=1461
Score = 163 bits (88), Expect = 5e-39
Identities = 432/590 (73%), Gaps = 55/590 (9%)
Strand=Plus/Plus
Query 542 CAAGATGGGATCTTGAAGTATATGT-TGAAGATGATGGAAG-TTTGTAAAGCTCAAGGCT 599
|||||||||||||||||||| |||| | |||| |||| || || ||||||||||| |
Sbjct 190 CAAGATGGGATCTTGAAGTACATGTCT-AAGACAATGG-AGCGATGCAAAGCTCAAGG-T 246
Query 600 TT-GTTTATGGGATTATTCCGGAGAATGGGAAGCCTGTGA-CTGG-TGCTTCTGATAATT 656
|| ||||| ||||| || ||||| ||||| | || | | || | |||||||||||
Sbjct 247 TTCGTTTACGGGATCGTTTTAGAGAACGGGAAAACGGT-AGCGGGAT-CTTCTGATAATC 304
Query 657 TAAGGGAGTGGTGGAAAGATAAGGTTAGGTTTGATC-GTAATGGTCCTGCGGCTATTACC 715
| | || ||||||||||| || || |||||||| | | || || || || ||||| | |
Sbjct 305 TCCGTGAATGGTGGAAAGACAAAGTGAGGTTTGA-CAGGAACGGACCAGCTGCTATAATC 363
Query 716 AAGTATCAAGCGGAGA-AT-AAT-ATCCCG--GGGATTCA-TGAAGGTAATAACCCGATT 769
||| | | ||||| || || ||| | | | || | | | | | ||| | | | ||
Sbjct 364 AAGCA-CCAGCGG-GATATCAATCTTTCTGATGGAAGTGATTCAGGGT-CTGA---GGTT 417
Query 770 --GGACCG-ACTC-CTCATACCTTGCAAGAGCTTCAAGACACGACTCTTGGATCGCTTTT 825
||| | || | | |||| |||| ||||||||||| || ||||||||| | || ||
Sbjct 418 GGGGAATGTAC-CGCGCATAAGTTGCTTGAGCTTCAAGATACTACTCTTGGAGCTCTGTT 476
Query 826 GTCTGCGT-TGATGCAACACTGTGATCCTCCTCAGAGACGTTTTCCTTTGGAGAAAGGAG 884
|| || | || ||| ||||| | |||||||| || || ||||||||||||||||| |
Sbjct 477 ATCGGC-TCTGTTGCCTCACTGCAAGCCTCCTCAAAGGCGGTTTCCTTTGGAGAAAGGCG 535
Query 885 TTCCTCCTCCGTGGTGGCCTAATGGGA-AAGAGGATTGGTGGCCTCAACTTG-GTTTGCC 942
| | || || |||||||| || ||| |||| ||||||||| ||||| || ||| ||
Sbjct 536 TGACACCACCATGGTGGCC-AACAGGACAAGAAGATTGGTGGGATCAAC-TGTCTTTACC 593
Query 943 TAAAGA---TCAAGG---TCCTGCACCTTACAAGAAGCCTCATGATTTGAAGAAGGC-GT 995
| || || ||| | || |||||||||||||||||||||||||||||||| | ||
Sbjct 594 CGAGGATTTTCGAGGACTTTCTCCACCTTACAAGAAGCCTCATGATTTGAAGAAG-CTGT 652
Query 996 GGAAAGTCGGCGTTTTGACTGCG-GTTATCA-AGCATATGT-TTCCTGATATT-GCTAAG 1051
||||| | || || |||| || | || |||| | |||||| ||| || ||| || ||
Sbjct 653 GGAAAATTGGTGTATTGATTG-GTGTAATCAGA-CATATGGCTTCA-GACATTAGC-AAC 708
Query 1052 AT-CCGTAAGCTCGTGAGGCAATCTA-AATGTTTGCAGGATAAGATGACT 1099
|| ||| || |||||||| | |||| || |||||||||| || ||||||
Sbjct 709 ATACCG-AATCTCGTGAGACGGTCTAGAA-GTTTGCAGGAGAAAATGACT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90921414815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5