BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20790.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479605 jgi|Araly1|479605|fgenesh2_kg.3__2306__AT3G20790.1 1757 0.0
Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1 185 6e-46
> Ahg479605 jgi|Araly1|479605|fgenesh2_kg.3__2306__AT3G20790.1
Length=1234
Score = 1757 bits (951), Expect = 0.0
Identities = 1154/1245 (93%), Gaps = 41/1245 (3%)
Strand=Plus/Plus
Query 64 CTTCACCTGGAATTGCCATACTCGGAGCTGGGATCTTCGTCAAAACTCAATACATTCCGA 123
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 11 CTTCACCAGGAATTGCCATTCTCGGAGCTGGGATCTTCGTCAAAACGCAATATATTCCGA 70
Query 124 GATTAGCTGAGATCTCCGATCTCGTCGACCTGAAAGCGATTTGGAGCCGTACTGAGGAAT 183
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 71 GATTGGCTGAGATCTCCGATCTCGTCGTCCTGAAAGCGATTTGGAGCCGTACTGAGGAAT 130
Query 184 CTGCAAAAGGAGCTGTGGAGATAGCAAGAAAGCATTTTCCTGAAGTGAAGTGCAAATGGG 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 131 CTGCAAAAGGAGCTGTGGAGATAGCAAGAAAGCATTTTCCAGAAGTGAAGTGCAAATGGG 190
Query 244 GAGATGAGGGTCTCAATGAGATCATTCAAGACAGTTCAATAGTTGGTGTTGCTGTAGTTG 303
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 191 GAGATGATGGTCTCAATGAGATCATTCAAGATAGTTCAATAGTTGGTGTTGCTGTTGTTG 250
Query 304 TAGCTGCAGAAACCATGGTTGAATTGTCACTGAAGATGCTCAAGGCAGGAAAGCACGTCC 363
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 251 TAGCTGCAGAAACCATGGTTGAAATGTCACTGAAGATGCTCAAGGCAGGAAAACACGTCC 310
Query 364 TTCAAGAGAAGCCAGCTGCTGCTTCAATCAGTGAGATAGAAACTGCAATGTCAAGCTATA 423
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 311 TTCAAGAGAAGCCAGCTGCTGCCTCAATCAGTGAGCTAGAAACTGCAATGTCAAGCTATA 370
Query 424 GAAATATTTCTGCTGATTCCCCATGCCGTCCAATTTGGGCTGTGGCTGAAAATTATCGTT 483
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 371 GAAATATTTCTGCTGATTCCCCATGCCGTCCAATCTGGGCAGTGGCTGAAAATTATCGTT 430
Query 484 TTGAGCCAGCTTTTGTTGAGTTGAAGAAACTGATAGCAGAAATTGGAGATATGATGAACG 543
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 431 TTGAGCCAGCTTTTGTTGAGTTGAAGAAACTGATAGCAGAAACTGGTGATATGATGAACG 490
Query 544 TCCAGCTTATTATTGAGGGATCAATGAACAGTTCTAATCCTTATTTCTCAAGCTCCTGGA 603
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 491 TCCAGCTTATTATTGAGGGATCAATGAACAGTTCGAATCCTTATTTCTCAAGCTCGTGGA 550
Query 604 GGCGAAATTTGAGTGGTGGTTTCATCTTGGATATGGGTGTACATTACATTGCAGGATTAA 663
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 551 GGCGAAATTTGAGCGGTGGTTTCATCTTGGATATGGGTGTGCATTACATTGCAGGGTTAA 610
Query 664 GAATGCTTGTTGGATGTGAGGTAACATCAGTCTCAGCCACCACTACCCATGTGGATAAGA 723
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 611 GAATGCTTGTTGGATGTGAGGTAGCATCAGTCTCTGCCACCACTTCCCATGTGGATAAGA 670
Query 724 CTTTACCTGGACCAGACAATATAACATCAAACTTTCAGCTCGAGAACGGATGCTCTGGGG 783
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 671 CTTTACCTGGACCAGACAATATAACATCAAACTTTCAGCTGGAGAACGGATGCTCTGGTG 730
Query 784 TTTTTGTTATGGTTGTGTCTTCAAGGTCTCCAAAG--AT--ACTA----T-GGA------ 828
||||||||||||||||||||||||| ||||||||| || | || | |||
Sbjct 731 TTTTTGTTATGGTTGTGTCTTCAAGATCTCCAAAGGCATGTAGTAAGACTTGGATATTAT 790
Query 829 G-A-A-TCGTAGGACTAAAGGGCACTGTTCAACTAGAGCGTGGAGTGGAAGGTGGCCGAC 885
| | | |||||||| |||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 791 GGAGAGTCGTAGGATTAAAAGGCACTGTTCAACTTGAGCGTGGAGTCGAAGGTGGCCGAC 850
Query 886 ATGGTTACATGGCCACGATTTACGGGGAAGGAGGGACATCAAGGACCATCTTTTACCCAT 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 851 ATGGTTACATGGCCACGATTTACGGGGAAGGAGGGACATCAAGGACCATCTTTTACCCGT 910
Query 946 TCAGCGGAGTGACTGAAGAGTTAAAAGCGTTCTTCAATGATATTTCAGAAACTTCAAAGG 1005
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 911 TCAGCGGAGTGACTGAAGAGCTAAAAGCGTTCTTCAATGATATCTCAGAGACTTCAAAGG 970
Query 1006 AGCAAGAGCCTCGTCTATCATATGTGGAAGGTGCTCGTGACGTTGCAGTTCTTGAAGCAA 1065
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 971 AGCAAGAGCCTCGTCTATCATACGTGGAAGGTGCTCGTGACGTTGCGGTTCTTGAAGCAA 1030
Query 1066 TGCTCGAGTCTGGTGCGAAAAATGGAGCCGTAGTCCCTGTCAACAAATTCTAGCTTTGAA 1125
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1031 TGCTCGAGTCTGGTGCGAAAAATGGAGCCGTAGTCCCTGTCACCAAATTCTAGCTTTGAA 1090
Query 1126 CCTTTATTAAGTACGATTAGACTCCAACATACCGCTAAAGCTTTTGCTGGAATAAAAATT 1185
||||| | | ||| | | | | ||||||||||| | |||||||||||||
Sbjct 1091 CCTTTC-------C-A--AGA-T--A-C---C-GCTAAAGCTTT-GATGGAATAAAAATT 1131
Query 1186 GTTACCGTT-CAA-CATGATAATACAAACTCTATAATATTTCTTTTGTAACCAATCTTTT 1243
||||| ||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1132 GTTAC-GTTTCAAAC-TGAAAATACATACTCTATAATATTTCTTTTGTAACCAATCTTTT 1189
Query 1244 ATTATCCCAAGACTTATGCATTCTGGGGGATTGGTTCTAGAGCTT 1288
|||||||| ||||||||||||||| |||| || |||||| |||||
Sbjct 1190 ATTATCCCGAGACTTATGCATTCTTGGGGCTTTGTTCTAAAGCTT 1234
> Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1
Length=1224
Score = 185 bits (100), Expect = 6e-46
Identities = 128/141 (91%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 1168 TTTGCTGGAATAAAAATTGTTACCG-TTC-AACATGATAATACAAACTCTATAATATTTC 1225
|||| ||||||||||||||||| || ||| ||| ||| |||||| |||||||||||||||
Sbjct 1224 TTTGATGGAATAAAAATTGTTA-CGTTTCAAAC-TGAAAATACATACTCTATAATATTTC 1167
Query 1226 TTTTGTAACCAATCTTTTATTATCCCAAGACTTATGCATTCTGGGGGATTGGTTCTAGAG 1285
|||||||||||||||||||||||||| ||||||||||||||| |||| || |||||| ||
Sbjct 1166 TTTTGTAACCAATCTTTTATTATCCCGAGACTTATGCATTCTTGGGGCTTTGTTCTAAAG 1107
Query 1286 CTTAAAAATAATTACAATAAG 1306
|||| ||||||||||||||||
Sbjct 1106 CTTATAAATAATTACAATAAG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5